Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978035.1:902640-906588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0046 0.31 12.3 5.2 1 23 132 154 132 154 0.97

2 11 1.3e-06 8.3e-05 23.5 1.2 1 23 164 186 164 186 0.98

3 11 0.0004 0.026 15.7 4.8 1 23 192 214 192 214 0.98

4 11 8.2e-05 0.0054 17.8 1.7 1 23 220 242 220 242 0.99

5 11 0.00023 0.015 16.4 0.2 1 23 248 270 248 270 0.98

6 11 4e-06 0.00026 22.0 1.1 1 23 276 298 276 298 0.98

7 11 4.4e-07 2.9e-05 25.0 1.7 1 23 304 326 304 326 0.98

8 11 1.7e-05 0.0012 19.9 0.9 1 23 332 354 332 354 0.97

9 11 2.3e-06 0.00015 22.7 2.1 1 23 360 382 360 382 0.98

10 11 5e-06 0.00033 21.7 2.6 1 21 388 408 388 410 0.95

11 11 0.00013 0.0084 17.2 1.0 3 23 418 438 416 438 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0046	0.31	12.3	5.2	1	23	132	154	132	154	0.97
2	11	1.3e-06	8.3e-05	23.5	1.2	1	23	164	186	164	186	0.98
3	11	0.0004	0.026	15.7	4.8	1	23	192	214	192	214	0.98
4	11	8.2e-05	0.0054	17.8	1.7	1	23	220	242	220	242	0.99
5	11	0.00023	0.015	16.4	0.2	1	23	248	270	248	270	0.98
6	11	4e-06	0.00026	22.0	1.1	1	23	276	298	276	298	0.98
7	11	4.4e-07	2.9e-05	25.0	1.7	1	23	304	326	304	326	0.98
8	11	1.7e-05	0.0012	19.9	0.9	1	23	332	354	332	354	0.97
9	11	2.3e-06	0.00015	22.7	2.1	1	23	360	382	360	382	0.98
10	11	5e-06	0.00033	21.7	2.6	1	21	388	408	388	410	0.95
11	11	0.00013	0.0084	17.2	1.0	3	23	418	438	416	438	0.97

Sequence Information

Coding Sequence: ATGGAGGAAGTAGACATGATGAAGACGTGTCCAGAGGGCGGCAAGGATGAGGGGGAGGCCTGGGCGGGCCTATGCTCCCTCCCAATTAAGCAAGAGTTCATACAAAGCGAATGCCAGAAGGCTTTCGACATTGAagTTACCATAGACGCAGAACCTGTCATCAAAACTGAGCCCGATGAAGTTGTTGAACAAGCACACACAATCACAATCACAGTAGAAAGAGAAATAGAACCTGCGGAACCAGAGTTCATTGGGATCAAACAGGAACCAGAAGAAGTTGAAGATCAGTTTGATGAGAACCATGATATTGAATGCATGGTGGAAGTTGAGTGTATTTTAGGTGATATGCCGAGACCTGACTGTAAACAAACAATCAAGCAAACTAAAGCAACACACTCATGCAAAATATGCAAGAAACAATTCCATTCGAGACGAGGCTTGGTTATACATAAACGAATACACAAAGTCAATATAAAGCCGAGTGAAAAATACATATGCGATTACTGCAACAAACAGTTTAGCGGTAGATCTTATTTAAAAAGACACATTATAAGTCACATGGGTCTAAAACTGTATTGTTGTAGTGTGTGCAACAAGAGGTTTGCTAGTGAGTGTTACTTAGCTATACATACGCGCACGCACACAGGCGAGCGTCCGTATAGCTGCCAATTGTGTACGCAACAGTTCGTGTCTTCGATAGACTTGAAACGTCACACCAAAACGCACACAGTTCAGAAACCTTACGTGTGTGAAGTATGCAacaaacagtttgttgccgaaTTGAATTTGAAACGGCACGAACGCGGCCACACGCGCGAGAAGCTCTTCTCTTGCGAGCTGTGTGATAAACGCTTCGCTCGCGCACCCAATTTGCATCAGCACCAACAAATCCACTTGGGCCTCAAACCGTTTACTTGTGATGTCTGTACGAAGCAATTCGGACGTCTGTCTAACTTAAAACAACATATGCGATCGCACTCTGGCGAGAGGCCGTTTGCATGTGAAGTTTGTAAGAAACAATTTGGACGCATGTCGAATTTGAAGCAACACGCGCGAAGCCATACAGGCGAGAGGCCTTTCGAGTGCGGATACTGTCAGAAACAGTTCAGTTTCAAAGCCGATTTGCAGAGGCACACCCGTAGCCATATGAACCAGAGGCCGTACGTTTGTGATGTGTGTGATAAAAGGTTCATTGACTCGTCGACGTTGAAGAAACATTTGCGGTGTCACACGGGTGAGAAACCTTATGGGTGCGAGTTCTGTAAGAAAAAGTTCGCTTTCAGCGGTGATTTGAAAAGGCATGTACAGAGTCATGAGACTGgtacttaccataAACATAACCGCTCCGCGCCGTTACGGCACCCGCTCAGTATTCTTTGTATGAACCTCCATACTGCAACGCACATTTATCGGCTTCGGAACGGCAACGCCTCGCCTCTGCACAAGCTAGCAGTGCGTGGGCATCTCGCCGTCACCGCGCTTACGTCTCGCCGCCGCGGGGACGGCGCGCGGACCTCATGTGGTTCCCCCGTGCCCCGCCGCTTGCCTCTAACATCGCCTACTGTCAACGTTGACAGCTAG
Protein Sequence: MEEVDMMKTCPEGGKDEGEAWAGLCSLPIKQEFIQSECQKAFDIEVTIDAEPVIKTEPDEVVEQAHTITITVEREIEPAEPEFIGIKQEPEEVEDQFDENHDIECMVEVECILGDMPRPDCKQTIKQTKATHSCKICKKQFHSRRGLVIHKRIHKVNIKPSEKYICDYCNKQFSGRSYLKRHIISHMGLKLYCCSVCNKRFASECYLAIHTRTHTGERPYSCQLCTQQFVSSIDLKRHTKTHTVQKPYVCEVCNKQFVAELNLKRHERGHTREKLFSCELCDKRFARAPNLHQHQQIHLGLKPFTCDVCTKQFGRLSNLKQHMRSHSGERPFACEVCKKQFGRMSNLKQHARSHTGERPFECGYCQKQFSFKADLQRHTRSHMNQRPYVCDVCDKRFIDSSTLKKHLRCHTGEKPYGCEFCKKKFAFSGDLKRHVQSHETGTYHKHNRSAPLRHPLSILCMNLHTATHIYRLRNGNASPLHKLAVRGHLAVTALTSRRRGDGARTSCGSPVPRRLPLTSPTVNVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -