Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978032.1:1568793-1572901[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.63 42 5.6 5.8 1 23 137 159 137 159 0.97

2 16 0.00021 0.014 16.6 1.0 1 23 197 219 197 219 0.96

3 16 0.068 4.5 8.6 10.8 1 23 225 247 225 247 0.98

4 16 0.00015 0.0096 17.0 4.1 1 23 253 275 253 275 0.97

5 16 6e-06 0.00039 21.4 1.2 1 23 293 315 293 315 0.98

6 16 0.00012 0.0078 17.3 1.7 1 23 321 343 321 343 0.96

7 16 0.022 1.4 10.2 8.5 1 23 349 371 349 371 0.98

8 16 2.3e-05 0.0015 19.6 1.6 1 23 377 399 377 399 0.98

9 16 6.9e-06 0.00045 21.2 3.0 1 23 417 439 417 439 0.98

10 16 5.9e-06 0.00039 21.4 1.1 1 23 457 479 457 479 0.98

11 16 0.00012 0.0078 17.3 1.7 1 23 485 507 485 507 0.96

12 16 0.022 1.4 10.2 8.5 1 23 513 535 513 535 0.98

13 16 2.3e-05 0.0015 19.6 1.6 1 23 541 563 541 563 0.98

14 16 1.7e-05 0.0011 20.0 2.3 1 23 581 603 581 603 0.98

15 16 0.00012 0.0078 17.3 1.7 1 23 609 631 609 631 0.96

16 16 0.00058 0.038 15.2 8.1 1 23 637 659 637 659 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.63	42	5.6	5.8	1	23	137	159	137	159	0.97
2	16	0.00021	0.014	16.6	1.0	1	23	197	219	197	219	0.96
3	16	0.068	4.5	8.6	10.8	1	23	225	247	225	247	0.98
4	16	0.00015	0.0096	17.0	4.1	1	23	253	275	253	275	0.97
5	16	6e-06	0.00039	21.4	1.2	1	23	293	315	293	315	0.98
6	16	0.00012	0.0078	17.3	1.7	1	23	321	343	321	343	0.96
7	16	0.022	1.4	10.2	8.5	1	23	349	371	349	371	0.98
8	16	2.3e-05	0.0015	19.6	1.6	1	23	377	399	377	399	0.98
9	16	6.9e-06	0.00045	21.2	3.0	1	23	417	439	417	439	0.98
10	16	5.9e-06	0.00039	21.4	1.1	1	23	457	479	457	479	0.98
11	16	0.00012	0.0078	17.3	1.7	1	23	485	507	485	507	0.96
12	16	0.022	1.4	10.2	8.5	1	23	513	535	513	535	0.98
13	16	2.3e-05	0.0015	19.6	1.6	1	23	541	563	541	563	0.98
14	16	1.7e-05	0.0011	20.0	2.3	1	23	581	603	581	603	0.98
15	16	0.00012	0.0078	17.3	1.7	1	23	609	631	609	631	0.96
16	16	0.00058	0.038	15.2	8.1	1	23	637	659	637	659	0.99

Sequence Information

Coding Sequence: ATGGAGTCAGACGGCTGTGCATCCGACGCGGAACAGTCGGCGTGGGCTTACAGTTACAGCATGACGGCGGAGAGCGGGCCTGTGAAGGAGGAGCCCGAGTGGGGCGAGTGCGGCGTGAGCgaggcggccgcggcagaaGGCTTGTATACCGACCACGACGTCAAAGACGAATTCGTTTGTGGCCCTGAAGTGCTACAGCAACAGGACATCGCCTTCTCAATGGAAAGTGCACAGAAAAGAATAGAAGAGGCCCCTTGTAAGCAGCAGCCGGCGGGCGGAGCCGGGGCCGCGCCCGAGAGCACCCACACCCGCCCCGGGGAGGGACCTCGCTGCGACATGAGCCACGAGCAACTGATCCAGCTTAGGCACTGTTTTGTGCAGCTCCAGCGTGTCTCTCCAGGAGGCTTGCATACATGCGAGACTTGTTTGATAACCTTTGTTTGTAAATCAAGTTTAAAGAAGCACAGCTCAACACATTCAATAGAAGAATCTTATTTTAATCACGAGGCATCTGATAAACAAAATGTGCTAAAGAGGCATTTAGTAAGGCATTCCGCTGCTCACAATATTGAAACTGgtgagaaaccctATTCTTGTGATATTTGCAAGAAACAATTTGCATTTAATTCTTCTTTTACTGCACATAAAGTAATTCACACGGGAGAGAAACCCTACTCCTGCAGTGTCTGCAACAAACATTTTAACCATATATCACATGTTCATCAACACAAGAAAACGCACAGAAGTGAGAAAGTGCATAGTTGCGATGTGTGCGAGAAGAAATTTACACTAAGGCGGCAACTAACTCGGCACAAAAGAATTCACACAGATGAGAAACCATTGCACAAGCACACCCACACGAGTGAGAAACGGTACTACAGCTGCGATGTGTGTAAGAAGGAATTTACATCAAAGCAGTATCTATCTATGCACATaagaatacacacaggtgagaaaccatATTCTTGTGATATTTGCAAGAAACAATTCACATTTAATTCTTCTTTTACTGCACATAAAGTAATTCACACGGGTGAGAAACCCTACTCCTGCAGCGTCTGCAACAAACAGTTTAACCATATATCACATGTTCATCAACACAAGAAAACGCATAGAAGTGAGAAAGTGTACAGTTGCGATGTGTGCGAGAAGAAATTTACACTAAAGCGGCAACTAACTTGGCACAAAAGAATTCACACAGATGAGAAACCATTTCACAAGCACACCCACACGGGTGAGAAACAGTACTACAGCTGCGATGTGTGTAAGAAGGAATTTACAACAAAGCACTATTTAAGTATGCACATAAGAATTCACACAGATGAGAAACCATTGCACAAGCACACCCACAAGGGTGAGAAACAGTACTACAGCTGCGATGTGTGTAAGAAGGAATTTACATCAAAGCAGTATCTAAGTTTGCACATAAGAATTCACACAGGTGAGAAGCCCTATTCTTGTGATATTTGCAAGAAACAATTCACATTTAATTCTTCTTTTACTGCACATAAAGTAATACACACAGGAGAGAAACCCTACTCCTGCAGTGTCTGCAACAAACAGTTTAACCATATATCACATGTTCATCAACACAAGAAAACGCATAGAAGTGAGAAAGTGTATAGTTGCGATGTGTGCGAGAAGAAATTTACACTAAAGCGGCAACTAACTTGGCACAAAAGAATTCACACAGATGAGAAACCATTGCACAAGCACACCCACACGGGTGAGAAACAGTACTACAGTTGCGATGTGTGTAAGAAGGAATTTACAACATTGCACTATTTAAGTATGCACATAAGAattcacacaggtgagaaaccatATTCTTGTGATATTTGCAAGAAACAATTCACATTTAATTCTTCTTTTACTGCACATAAAGTAATTCACACGGGAGAGAAACCCTACTCCTGCAGTGTCTGCAACAAACAGTTTACACATGTATCAAATTTTCATAAACACAAGAAAACGCATAGAAGTGAGAAATGTACAAAGGGTATACAAGaagaaatttaa
Protein Sequence: MESDGCASDAEQSAWAYSYSMTAESGPVKEEPEWGECGVSEAAAAEGLYTDHDVKDEFVCGPEVLQQQDIAFSMESAQKRIEEAPCKQQPAGGAGAAPESTHTRPGEGPRCDMSHEQLIQLRHCFVQLQRVSPGGLHTCETCLITFVCKSSLKKHSSTHSIEESYFNHEASDKQNVLKRHLVRHSAAHNIETGEKPYSCDICKKQFAFNSSFTAHKVIHTGEKPYSCSVCNKHFNHISHVHQHKKTHRSEKVHSCDVCEKKFTLRRQLTRHKRIHTDEKPLHKHTHTSEKRYYSCDVCKKEFTSKQYLSMHIRIHTGEKPYSCDICKKQFTFNSSFTAHKVIHTGEKPYSCSVCNKQFNHISHVHQHKKTHRSEKVYSCDVCEKKFTLKRQLTWHKRIHTDEKPFHKHTHTGEKQYYSCDVCKKEFTTKHYLSMHIRIHTDEKPLHKHTHKGEKQYYSCDVCKKEFTSKQYLSLHIRIHTGEKPYSCDICKKQFTFNSSFTAHKVIHTGEKPYSCSVCNKQFNHISHVHQHKKTHRSEKVYSCDVCEKKFTLKRQLTWHKRIHTDEKPLHKHTHTGEKQYYSCDVCKKEFTTLHYLSMHIRIHTGEKPYSCDICKKQFTFNSSFTAHKVIHTGEKPYSCSVCNKQFTHVSNFHKHKKTHRSEKCTKGIQEEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -