Phep018616.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978024.1:414232-423611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.25 16 6.9 0.0 1 23 179 201 179 201 0.94 2 20 0.00017 0.011 16.8 0.1 3 23 346 366 345 366 0.96 3 20 0.02 1.3 10.3 0.0 3 23 376 397 374 397 0.94 4 20 5.1 3.3e+02 2.8 0.0 1 23 403 425 403 425 0.88 5 20 0.24 16 6.9 0.8 1 23 555 577 555 577 0.94 6 20 0.00052 0.034 15.3 1.3 2 23 584 606 583 606 0.92 7 20 0.00011 0.0074 17.4 2.9 3 23 614 634 613 634 0.98 8 20 0.0019 0.13 13.5 2.0 1 23 640 662 640 662 0.96 9 20 0.025 1.7 10.0 0.2 1 23 668 690 668 690 0.97 10 20 0.0069 0.46 11.8 0.0 3 23 742 763 741 763 0.92 11 20 4.3e-05 0.0029 18.7 1.7 1 23 769 791 769 791 0.96 12 20 0.12 7.6 7.9 0.0 1 23 797 819 797 819 0.97 13 20 0.19 12 7.3 0.1 6 23 831 848 824 848 0.87 14 20 0.99 66 5.0 1.1 1 23 887 908 887 908 0.72 15 20 0.0049 0.33 12.2 1.3 3 23 1107 1128 1106 1128 0.96 16 20 0.0035 0.23 12.7 0.2 1 23 1134 1156 1134 1156 0.95 17 20 0.01 0.68 11.2 0.0 3 23 1164 1184 1162 1184 0.95 18 20 0.0029 0.19 13.0 0.0 2 23 1191 1212 1190 1212 0.95 19 20 0.00074 0.049 14.8 0.2 1 23 1218 1242 1218 1242 0.94 20 20 0.083 5.5 8.4 0.0 3 23 1251 1274 1249 1274 0.92
Sequence Information
- Coding Sequence
- ATGAATAACGCCACGGAGCAAATATTCTTACCTAGTTCCTCGGGTATCCAGGATCCGCCTAGCCTGCCAAAACCCTTGAATGGAGTACAGCCAGTTAATCTTGACAGTGTGGAGGAGTTCTCAAAGGTGTGCCGCGTGTGTGCAGCCGTCTCGGAGTTAGTGATGCCCATCTTCAGCGGAGAGGGCTTGCAGAACAATCTTGCTGACAAGATACACAAGCATCTTCCCATAAAGGTGGCAGAAAGCGACAGTCCCGCGCTGCCGGTGGTGGTGTGCTACCAGTGCGCGAGCACGCTGCTGGCCACGCACGAGCTGGTGCAGTGCGCGGCGCAGGCCGACGCCGCCCTGCGCACGCGcagcgccgcgctcgccgccgcgcgcAGCCGCGAGGAGGAAAAGTTGCGAGCGGCTCAGGAACGCGACGCGACCGGCGAGGACGATACGTTCGATCCGTTATCGTATACCGCGGTCGTTAAAAGAGTGCTCGCGAATTATTTTCACACGCTCGACGTGGACGAGACCGAGGATTTCGAGTACGCGTGTCAGATGTGTAAGCGTTCGGCCGCCACCGTGGACGCGCTCGCCGCGCACGTGGCGGAGCACGggccgcgcggcgccgccgccgtcgcGCGCTTCGTGCGCGACCACGTCACCTTCGAGCAGCCGCTGGAGCCCGAGCcgcccccgccccgccccgcgccgcccgccccgcccGCCTGCTGCTGCCCGTTCTGCGAGAGCGCGTTCACGTCGGCCGCGCGCCTCGCCTGCCACCTCGCGGAGCACGTCGCCGTCGGCGCGCGCAGCCCCGTCGAGTGCTGCGGCGAGCTGTACCGCGAGCCGCTCGCGTTCGCGCGCCACGCCCGGGCCGCGCAccggcgcgcgcccgccgcccgcgcctgCCGGGCCTGCGGGCTGGCGGCGCCCGGCCCGGCCGCCCTGGCCGCGCACGTGCGCCGCGCCCACGCcgagcccgcgccgcgcccgcgccccgccgcgccgcgccccgccaACCAGAAGTACGTGCCGGCGCCCTGCCCGCGCTGCGGCAAGCTCTTCTCCAACAAGTACAACATGGCGGCGCACGCGCGCGCCCACGACCGTGACGCGCCCGCGCGCCTGGCCTGCccgcgctgcccgcgccgcTACGGCAGCCGCGGCGCGCTGGCGGCCCACGAGCGCCTCGCGCACGACGGCCGGCTGCGCTacgcgtgcgcggcgtgcggcgAGCGCTTCGGCACGCGCGGCGCGCGCGACGTGCACGCGGCGCGGCACTCGGGCGCGCGGCCGCACGCCTGCCCCCGCGCCGGCTGCGGCGCCGCGCGGGCGGCTGACGGCGCGGGCGCCTGGCGCGACGCGGCCGACTCCAGCGACGACGACCGCCCGCTGGCGACCCTCGCCGCCGAGACGCCGAGGGACGCCTACGACGCCTTTTACGCGGCGCTGTTGAACTTTCGGAATCACTACTTGGGCTCGCACGGAGCGCGGGCCGCCTACCCCGAGTTCACGGAGTCGAGCGACTCGTCCTCGCCGGAGTGGCGCGCGGCGCTCGCGGCCTCGCTGGACGACCTGTCGCCGGGCAACAGGCGCGCGTCGCGGCTGGACGCGGGCACGCGGCAGGCGCtggcgcgggcgcgcgcgcgcgaGGGCGGCCGCGTGGTGTACGCGTGCGGCACGTGCGGCAAGCGGCTCAGCAGCGCGCACACGTTCGTGTTCCACGCGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGCCTGCAGCGGCACCTGGCCGAGACGCAcgagcgccgccgccggcgcgccTGCCGCCACTGCGCGCGCACGTTCGCCAACTCGCAGAACCTCAAGCAGCACCTGCGCACGCACACGGGCGAGCGGCCGCACGCGTGCGCGCAGTGCCCGGCCCGCTTCGCGCACGCGGGCTCGCTGCACGCGCACCGCCGCACGCACTGCGCCGAGCGCCCGCaccgctgcgcgcgctgccccGCCGCCTTCCGCCTGCGCGCCGGCCTCGCCCGCCACGCGCGCCAGCACGCGCCGCCCGCCCAGCACGCGCCCGACGACACGCGCTCCTACTTCGTTCTCGCTCCGCTAGAGACGGTCCCGACGAAAACCGAAACTCGAGTCGATAACGAgagagcggcggcggcgggcggcgggcggggcgcggcgcggcggcggcggcactGCGCCGCGTGCGGGCTCGGCTTCTCGGACGCCGGCAACCTGGCGCGgcacgcgcgcgccgcgcacgcgcagctGCGGCCGCACGCGTGCGCGCAGTGCGGCGCCGCCTTCACGCGGCGCGACCACCTGCGCGAGCACGAGCGCACGCACGCGGCGGCGCGGCCCTTCGTGTGCGCGGCGTGCGGCGCGGCCAGCCgctcggccgccgcgctgcgcttgCACGCGCGCGTGCACCAGCCGCGCCGCCACGCCTGCCCGCGCCCGCCCTGCGCCGCCGCcttccgccgccgcgccgagctGCGCGCGCACCTCAGCGTGCACACGGGCGAGCGCGCGCACGCCTGCCCGGCCGTGCGCCGCTGCGCCTTCTGCCCGGAGCGGCTGCCGGCGGCCGAGCTGCGCGTGCACCTCGAGCGCCGCCACGCCGCGCAGGTGTTCCACTGCGACGAGTGCGGCCGCTACCTGTCGCGGCGCGTGCTGCTGCTGCACATGACGTCGCACGCGGCGCAGTACGACGCGGCCGAGcaggccgccgcgcgcgccgcgcagccccacctgccgccgcccgcgcccacgCCCGCGCAGCGCATGGACTCCGCGCTGCGCGAGCTGCTGCGCGTGGCGCCCGCGCTCTGCGAGCACCCCGTGCGCGCCGGGGCGTCGCCGCCGCCCGAGCCCGCCCGAGGGACCGAGGCTCCGAGGGAACCGGGGGACCCGGACGGGAATACGACCGAAAACAGAGTTAGGACTAGACGAGCCCGAAACGTAACCCCGGCCTCTTCGAGTCCGACGCCTCGCGAGCCGCCGCGGCCGGCCCCGGCCCTCGCGCGCGCCCCCCCGCCGGACCTGACGTCCCCGCCGGCGAGCGTCGCCGCGTCGCCGCCCGAGACCGCGATCGCGCCGTCAGGCGGCCGCGACGAGTTCTCGGACCGCAGCGACGCCGAGAGCGAATTCGGCCCGCTGCCCGACTCCGTGTTCTCGGCGATCGAGGATCCGCCCGACGCGCGCCCCGTCGCCGCCGAGACGGACGACGCGGCCGCGGCGGCGAGAGCCGCCGCCGAGAAGAGGAGGGCGAATCGCAAGCGCGAGCGCGCCTGCCCGCACTGCGACAAGAAGTACTCCGCGGCGTCGTCGTACTTCTACCACCTGAAGTACTTCCACCGGCGCAGCCGCGAGCACGCGTGCGCGGTGTGCGGCGCGCGGTTCGGCACGCGGGGCACGCTGCGCGAGCACGCGCGGCTGCACTCGGCCGAGCGCGCGCTGGCGTGCGGGCGCTGCGGCGCGCGCTTCCGCAGCAAGGCGGGGCTGTACAtccacgcgcgcgcgcacgcgccggcgccggcctgGCCGTGCGGCGAGTGCGGGCGCGCGTTCCGCTGGCGCGCGCAGCTGCGGCGGCACGCGGCGCGGCacgcgggcgcgcgcgcgcacgcctGCCCGCAGCCGCGCTGCCCGCGCGCGTTCAGCGTGCGCGCCGACCTGCTGCGGCACGCGCGCACGCACGCGCGGCCGGCGGCGCGCCTGGCCTGCCCCGCGCCGCTGTGCGCCGCCACGTTCGCGCAGCCGCGCTACCTGCGCGCGCACCTCGCCAGGAAGCACCCCGGCCGCGCGCaggccgccggcgccggcgaCCCGACGCACCATCAAAAATAG
- Protein Sequence
- MNNATEQIFLPSSSGIQDPPSLPKPLNGVQPVNLDSVEEFSKVCRVCAAVSELVMPIFSGEGLQNNLADKIHKHLPIKVAESDSPALPVVVCYQCASTLLATHELVQCAAQADAALRTRSAALAAARSREEEKLRAAQERDATGEDDTFDPLSYTAVVKRVLANYFHTLDVDETEDFEYACQMCKRSAATVDALAAHVAEHGPRGAAAVARFVRDHVTFEQPLEPEPPPPRPAPPAPPACCCPFCESAFTSAARLACHLAEHVAVGARSPVECCGELYREPLAFARHARAAHRRAPAARACRACGLAAPGPAALAAHVRRAHAEPAPRPRPAAPRPANQKYVPAPCPRCGKLFSNKYNMAAHARAHDRDAPARLACPRCPRRYGSRGALAAHERLAHDGRLRYACAACGERFGTRGARDVHAARHSGARPHACPRAGCGAARAADGAGAWRDAADSSDDDRPLATLAAETPRDAYDAFYAALLNFRNHYLGSHGARAAYPEFTESSDSSSPEWRAALAASLDDLSPGNRRASRLDAGTRQALARARAREGGRVVYACGTCGKRLSSAHTFVFHARIHTGERPCVCHVCGKQFRAPNGLQRHLAETHERRRRRACRHCARTFANSQNLKQHLRTHTGERPHACAQCPARFAHAGSLHAHRRTHCAERPHRCARCPAAFRLRAGLARHARQHAPPAQHAPDDTRSYFVLAPLETVPTKTETRVDNERAAAAGGGRGAARRRRHCAACGLGFSDAGNLARHARAAHAQLRPHACAQCGAAFTRRDHLREHERTHAAARPFVCAACGAASRSAAALRLHARVHQPRRHACPRPPCAAAFRRRAELRAHLSVHTGERAHACPAVRRCAFCPERLPAAELRVHLERRHAAQVFHCDECGRYLSRRVLLLHMTSHAAQYDAAEQAAARAAQPHLPPPAPTPAQRMDSALRELLRVAPALCEHPVRAGASPPPEPARGTEAPREPGDPDGNTTENRVRTRRARNVTPASSSPTPREPPRPAPALARAPPPDLTSPPASVAASPPETAIAPSGGRDEFSDRSDAESEFGPLPDSVFSAIEDPPDARPVAAETDDAAAAARAAAEKRRANRKRERACPHCDKKYSAASSYFYHLKYFHRRSREHACAVCGARFGTRGTLREHARLHSAERALACGRCGARFRSKAGLYIHARAHAPAPAWPCGECGRAFRWRAQLRRHAARHAGARAHACPQPRCPRAFSVRADLLRHARTHARPAARLACPAPLCAATFAQPRYLRAHLARKHPGRAQAAGAGDPTHHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -