Phep027182.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978035.1:8251091-8255721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00035 0.023 15.8 0.9 1 23 588 610 588 610 0.98 2 18 3.3e-05 0.0022 19.1 2.8 1 23 630 652 630 652 0.97 3 18 0.0026 0.17 13.1 1.1 2 23 675 697 674 697 0.96 4 18 0.46 30 6.0 0.6 1 21 702 722 702 723 0.94 5 18 0.024 1.6 10.1 0.4 1 21 796 816 796 817 0.94 6 18 0.0035 0.23 12.7 1.0 2 23 824 845 823 845 0.97 7 18 0.023 1.5 10.1 2.2 1 23 851 874 851 874 0.97 8 18 1.7e-05 0.0011 20.0 3.8 1 23 880 902 880 902 0.98 9 18 0.038 2.5 9.4 1.6 1 23 911 933 911 933 0.97 10 18 6.4e-05 0.0042 18.2 1.2 1 23 939 961 939 961 0.97 11 18 0.00084 0.055 14.6 0.6 1 23 967 989 967 989 0.98 12 18 0.016 1 10.6 2.3 1 23 995 1017 995 1017 0.98 13 18 1.6e-05 0.001 20.1 0.9 1 23 1023 1045 1023 1045 0.97 14 18 5.2e-05 0.0034 18.5 1.5 1 23 1051 1073 1051 1073 0.98 15 18 0.00044 0.029 15.5 3.5 1 21 1079 1099 1079 1101 0.94 16 18 0.00012 0.008 17.3 2.2 1 23 1107 1129 1107 1129 0.98 17 18 1.1e-05 0.00075 20.5 4.5 1 23 1135 1157 1135 1157 0.99 18 18 0.001 0.068 14.4 1.7 1 23 1164 1187 1164 1187 0.97
Sequence Information
- Coding Sequence
- ATGGGTATGCCTCCTACACTCCTTCGCTCTCAAATTAGGAGGGAAGGAGTGGAGGAGGAGAGCCCCATACACCCCGCCGCGTGGTCCCAAATGCGCGGTGAAGAATACACTCTCTCCCGCGGAGTGAGACAGGGTGGCCTAACATCCCCGACTCTTTTTAACCTGTATGTGAATGACTTGATAGAGGAACTCAGTGCCACCAGCGTCGGTTGCCACATGAATAACCATTGTGTTAATAATTTAAGCTACGCGGATGACATGGTGTTGCTGAGTCCCTCTGTCAGGGCGTTGAAGCAGTTAATAAATGTTTGTGAAAAGTACGCGGAGGGACACGGTCTGAAATATAATGTGAAAAAAACAGAAATGATGGTGTTTAGACACGGGAAAGGTCCTGATCATGTCCCTGCTGTTAAGTTGTATAACATACCGATTAACATAAGTCAAGAGTTTAAATATTTAGGTCATGTTTTGAATGACAAGCTGCGTGACGATGACGACATAGATAGGCAACGCAGATCTGTAGCCATGAAGGGCAACATGTTGGCGCGCCGCTTTGCTCGCTGCTCGAACCAAGTAAAGATCACTCTGTTCGTGGCGCACTGCCAGGCGTTCTACACCAGTCAGCTGTGGGGTAGCTACTCGCGGCGCGCATACCATGCGCTGCGAGTGCAGTACAACAACGCCTTCCGCGGCATGCTGCAGCTGCCCTGGCGGTGTAGTGCATCGGGCATGTTCGCCGAGAACGGAGTGGATGACTTTTATGCGATTATGCATAAAAGGCTTGCGTCATTTCTGACGATATTAAAAAACACTGACAATAGCATACTGAGGGAGATATCTTCAAGAGTATGTGCTGCAAACACCAGCCACCTCCAAACCAAGATAAAAGCAACAGAAGCCATACGAGACCCCAAGGATGCTACCACCACCCACTCTAGACCTAAAGACACCACTACCACCATAACGCCAAAGACAGAAACCGAACAGACCACAGCTGACATTACTACCAGCTCTGAAGACTGGTTTATTGGTAGTACGCCCAAGACAGAAGTTGCAACAGTTTGCAATGTTCCTACTACCCAGCCTAGCCTTAAAGACACTATTTGCAATATAACGCTAACGACAAAAGTAATACAGAGCTCTACAGAAATTACCAGCCCTGAAGGCACTAGTGCTAGTAATACGCCTAGAACACTAGTAGCACCAGTTCATGGCAATGTTCCTACTACCCAGTCTGGTATCGACACTACTGCTAATATAACGCCAATAATAGAACCAGTATGGACCACTGGAAATACCAGTACTACTGATACGCCTAGAACAGGAGTAGCAACAGTTCTAAGCAATGTTCCTACTACCAACCCTAGTCTTAAAGACACTACGGCTAATGCTGTAATCCAGAGCCCTACAGACATTACCAGCTCTGAAGGCATTAGTGCCAGTAATACGGCTAGAACAGAAGTAGCACCACTTAGCAATGTTCCTACTACCCAGTCTTGTCTTAACACTACTGCTAATATAACGCCAAAGATAGAACTAGTATGGAGCCCTGAAGGCACTAATACTACTAATACGCCCAGAACAGAACTGCCAGTTCTTGTCAATGCTTCTACTACTTACCCTATCATTGAAGACGCTACTGCCAATATTACGCCAAAGATAGAACCAGCGTGGACCCCTGCAGATACTAGTGGTGCAATCTCACTAAAACCCTGTTACATTAAGTTGGAACGCTTGGAACACATTCCCTACAAGAATGCATTCGTATGTCCGGTATGCCAAAAGGTATGCGGCTTCAAGCAAAACCTTAGGATGCATCTTCTAGTTCATACTCAAGAAGAAATCAAGACGATCAAAATTGAGAAGAAGGTTATGAAGAAAGGGAAATTCAACTGTCATATTTGTGGACAGGGATTGACAAGAAAAGCTCACCTAACTAAACACCTGAACATACACACAAGAGATCCGTTCTTGGAGCAAATacgtataaaaaaacaatatcacATTACGAAGACGTATTTAGAATGTGACGACTGTGGAATGAGGACATTGAGGAAGACGAGTCTGTTAAAGCATATGCGGAGGTTCCATAGAGACGGGAGCTTCGCATGCCAAGTTTGCAAGCAACAGTTCAGAGCTGCGTGCAAGCTGTTGGAACACATAAAGCTCGCAGCTTGCGAGCAAGCAAAAGAAACAGTTGGACCACAGTCTGATGAGGCCGTCTTGAATGAAATGCTGAAATCCTGCTTTGTTAAACTTGAACGGTTTAATATTGGAAAAGGCAAGGCTATAATGAAGATAGTTGATGAAACTACGAAAAGTAGCAGTGAGGATGACAATTCTGTTGGGGAGGATCATTCCGCTTTTCAAACTGATGAAGAGATATACTATTGCGGCGTTTGCGAGGAGCAGTTTGTATCGTTGTCATCGTTAAGCGACCATGTATGCCGTCGTCGCGAGAAACCGGTCTCGTGCGATATTTGCAGTAAGAAGTTCAGTGCGACCTGTTACTTAATCGAACACCTTCGCGTTCACTCAGGCGAGAAACCCTTTGTGTGTGACGTGTGTAAGAAGCGATTCCACCTGAAACTTACCATGAAAACGCATATTATAACTGTGCATTTGCGTGGGATGGCTTACTCGTGCAAATTGTGCAAGAAAAAGTTTCGCAGCGCTTTCTCATTGCGGAAACATGTTCGCAGTCACACGGGGGAGAAGGAAATCAAACGGTATTCGTGTAAAGCGTGTAAGAAACGGTTCAGGAGCTACCGGGAGCGTGTGGAGCACGCCCGAGTCCACACCGGCGAGAAACCGTACGTCTGCAAAGTGTGCGACAAGGGATTCCGTGTGGAATCCGACCTGAGGATCCATAATCGCCACCATACCGGAGACAAACCGTATTCATGTGATGTGTGCAAGAGAAGGTTTCGTATTTGGCAGACGTTGGACGCTCACAAACGCGtgcacacaggtgagaaaccgttTACGTGTGACTTGTGCAAGAAACAGTTCAAATGTTGGGCTGCGTTGATGACGCACAGCCGGATACACACAGGGGAGAGACCGTACGCGTGCGAGTATTGCCCGAAGAAGTTCACACAGAAAGCTCATTTGGGCACCCATGTGAtgatacacacaggtgagaaaaaGTTCAGTTGTACGGTGTGTGACAAAAGGTTTATCGAGAGATCCAAATTGACGCAGCACAGCCGTATCCACACTAATGAGAAACCTTACGCTTGCGATGTCTGTAACAAAACCTTTAGAGTCAGAGAGAGTCTGAGACGCCATAAGCGTTGTCATACGGATGAGAGACCGTATGCGTGCGATGTGTGTAACAAAGCCTTTAGAAAAGGTGAGCACCTGAGAACCCATAAACGTTCTCACACGGGCGAGAAACCATACGAGTGTAAAGTGTGCAAGAAGTTGTGCTCTCAGTCGTCGAATTTGAGGTCGCATATGAAGACGCACGGTAGGAAGAGCCATCCGTTCAGTTGTCATGTGTGTGAGAAGAGGTTCCAGAGCCGTATATCTTTGGATAACCATTTGTTGACGGTGCATGATGCGCGTGCGGCCAGCGGCGGCTTTGCAGTCTCGACAGCCCCACCGCCATAG
- Protein Sequence
- MGMPPTLLRSQIRREGVEEESPIHPAAWSQMRGEEYTLSRGVRQGGLTSPTLFNLYVNDLIEELSATSVGCHMNNHCVNNLSYADDMVLLSPSVRALKQLINVCEKYAEGHGLKYNVKKTEMMVFRHGKGPDHVPAVKLYNIPINISQEFKYLGHVLNDKLRDDDDIDRQRRSVAMKGNMLARRFARCSNQVKITLFVAHCQAFYTSQLWGSYSRRAYHALRVQYNNAFRGMLQLPWRCSASGMFAENGVDDFYAIMHKRLASFLTILKNTDNSILREISSRVCAANTSHLQTKIKATEAIRDPKDATTTHSRPKDTTTTITPKTETEQTTADITTSSEDWFIGSTPKTEVATVCNVPTTQPSLKDTICNITLTTKVIQSSTEITSPEGTSASNTPRTLVAPVHGNVPTTQSGIDTTANITPIIEPVWTTGNTSTTDTPRTGVATVLSNVPTTNPSLKDTTANAVIQSPTDITSSEGISASNTARTEVAPLSNVPTTQSCLNTTANITPKIELVWSPEGTNTTNTPRTELPVLVNASTTYPIIEDATANITPKIEPAWTPADTSGAISLKPCYIKLERLEHIPYKNAFVCPVCQKVCGFKQNLRMHLLVHTQEEIKTIKIEKKVMKKGKFNCHICGQGLTRKAHLTKHLNIHTRDPFLEQIRIKKQYHITKTYLECDDCGMRTLRKTSLLKHMRRFHRDGSFACQVCKQQFRAACKLLEHIKLAACEQAKETVGPQSDEAVLNEMLKSCFVKLERFNIGKGKAIMKIVDETTKSSSEDDNSVGEDHSAFQTDEEIYYCGVCEEQFVSLSSLSDHVCRRREKPVSCDICSKKFSATCYLIEHLRVHSGEKPFVCDVCKKRFHLKLTMKTHIITVHLRGMAYSCKLCKKKFRSAFSLRKHVRSHTGEKEIKRYSCKACKKRFRSYRERVEHARVHTGEKPYVCKVCDKGFRVESDLRIHNRHHTGDKPYSCDVCKRRFRIWQTLDAHKRVHTGEKPFTCDLCKKQFKCWAALMTHSRIHTGERPYACEYCPKKFTQKAHLGTHVMIHTGEKKFSCTVCDKRFIERSKLTQHSRIHTNEKPYACDVCNKTFRVRESLRRHKRCHTDERPYACDVCNKAFRKGEHLRTHKRSHTGEKPYECKVCKKLCSQSSNLRSHMKTHGRKSHPFSCHVCEKRFQSRISLDNHLLTVHDARAASGGFAVSTAPPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -