Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978035.1:8243227-8248978[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.8e-05 0.0045 18.1 1.4 1 23 362 384 362 384 0.98

2 18 2.6e-05 0.0017 19.4 2.8 1 23 404 426 404 426 0.97

3 18 0.0058 0.38 12.0 0.9 2 23 449 471 448 471 0.95

4 18 0.36 24 6.4 0.6 1 21 476 496 476 497 0.94

5 18 0.019 1.3 10.4 0.4 1 21 570 590 570 591 0.94

6 18 0.0028 0.19 13.0 1.0 2 23 598 619 597 619 0.97

7 18 0.012 0.81 11.0 2.6 1 23 625 648 625 648 0.98

8 18 7.6e-06 0.0005 21.1 2.8 1 23 653 675 653 675 0.98

9 18 0.018 1.2 10.5 1.5 1 23 684 706 684 706 0.96

10 18 5.1e-05 0.0034 18.5 1.2 1 23 712 734 712 734 0.97

11 18 0.00066 0.044 15.0 0.6 1 23 740 762 740 762 0.98

12 18 4.1e-05 0.0027 18.8 2.0 1 23 768 790 768 790 0.98

13 18 4.1e-06 0.00027 21.9 5.3 1 23 796 818 796 818 0.98

14 18 1.9e-05 0.0012 19.8 0.8 1 23 824 846 824 846 0.98

15 18 0.14 9.2 7.7 5.9 1 21 852 872 852 874 0.91

16 18 9e-05 0.0059 17.7 1.9 1 23 880 902 880 902 0.98

17 18 4.5e-05 0.003 18.7 3.8 1 23 908 930 908 930 0.99

18 18 0.00017 0.011 16.8 1.2 1 23 937 960 937 960 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.8e-05	0.0045	18.1	1.4	1	23	362	384	362	384	0.98
2	18	2.6e-05	0.0017	19.4	2.8	1	23	404	426	404	426	0.97
3	18	0.0058	0.38	12.0	0.9	2	23	449	471	448	471	0.95
4	18	0.36	24	6.4	0.6	1	21	476	496	476	497	0.94
5	18	0.019	1.3	10.4	0.4	1	21	570	590	570	591	0.94
6	18	0.0028	0.19	13.0	1.0	2	23	598	619	597	619	0.97
7	18	0.012	0.81	11.0	2.6	1	23	625	648	625	648	0.98
8	18	7.6e-06	0.0005	21.1	2.8	1	23	653	675	653	675	0.98
9	18	0.018	1.2	10.5	1.5	1	23	684	706	684	706	0.96
10	18	5.1e-05	0.0034	18.5	1.2	1	23	712	734	712	734	0.97
11	18	0.00066	0.044	15.0	0.6	1	23	740	762	740	762	0.98
12	18	4.1e-05	0.0027	18.8	2.0	1	23	768	790	768	790	0.98
13	18	4.1e-06	0.00027	21.9	5.3	1	23	796	818	796	818	0.98
14	18	1.9e-05	0.0012	19.8	0.8	1	23	824	846	824	846	0.98
15	18	0.14	9.2	7.7	5.9	1	21	852	872	852	874	0.91
16	18	9e-05	0.0059	17.7	1.9	1	23	880	902	880	902	0.98
17	18	4.5e-05	0.003	18.7	3.8	1	23	908	930	908	930	0.99
18	18	0.00017	0.011	16.8	1.2	1	23	937	960	937	960	0.97

Sequence Information

Coding Sequence: ATGACTTCGGATTTGAGTGATTTGGTGAAAGAGGAGGCGGCGTGGGAGGCCGAGTACGTGGAGGCGCTGTACTCGGGCCGGCAGGAGCCCCGGCCGGAGCCCGAGGGGGGCTCCGAGAGAAATGCGGCCGAAGACTTCGCGTTGCCAGCTTCAAGAGTATGTGCTGCAAACACCAGCCACCTCCAAACCAAGACGAAAGCAACAGAAGCCATACGAGACCCCAAGGATGCTACCACCACCCACTCTAGACCTAAAGACACCACTACCACCATAACGCCAAAGACAGAAACCGAACAGACCACAGCTGACATTACTACCAGCTCTGAAGACTGGTTTAATAGTCGTACGCCCAAGACAGAAGTATCAAAAGTTTGCAATGTTCCTACTACCCGCCCTAGCTTTAAAGACACTACTTCCAATATAACGGCAACGACAAAAGTAATACAGAGCCCCACAGACATTACCAGCCCTGAAGGCACTAGTGCTAGTAATACGCCTAGAACACAAGTAGCACCAGTTCTTACCAATGTTCCTACTACCCAGTCTGGTATCGACACTACTGCTAATATAACGTCAAAAATAGAACCAGTATGGACCACTGGAAATACCGGTACTACTGATACGCCTGGAACAGGAGTAGCAACGGTTCCTAGCGATGTTCCTACTACCAACCCTAGCCTTAAAGACACTAGGGCTAATGCTGTAATTCAGAGCCCTACAGACATTACCAGCCCTGAAGGCATTAGTGCTAGTAATACGCCTAGAACAGAAGTAGCACCACTTAGCAATGTTCTTTCTACCCAGTCTAGTCTTGACACTACTGCTAATATAACACCAAAGATAGAACTAGTAAGTAGTCCTGAAGGCACTAATACTACTAATACGCCCAGAACAGAAGTAACACCAGTTCTTGTCAATGCTTCTACTACCTACCCTATCATTGAAGACACTACTGCCAATATTACGCCAAAGATAGAACCTGTGTGGACCCCTGCAGATActagtggtggtggtggtgcaATCTCACTAAAACCCTGTTACATTAAGTTGGAACACTTGGAACACATTCCCTACAAGAATGCATTCGTATGTCCGGTATGCCCAAAGGTATGCGGCTATAAGCATAACCTTAGGATGCATCTTCTAGTTCATACTCAAGAAGAAATCAATACGATCAAAATTGAGAAGAAGGTTATGAAGAAAGGGAAATTCAACTGTCATATTTGTGGACAGGGATTGACAAGAAAAGCTCACCTAACTAAACACCTGAACATACACACAAGAGATCCGTTCTTAGAGCAAATACGTAGAAAACAACAATATCACATTACGAAGACGTATTTAGAATGTGACGACTGTGGAATGAGGACATTGAGGAAGACGAGTCTGTTAAAGCATATGCAGAGGTTCCATAGAGACGGGAGCTTCGCATGCCAAGTTTGCAAGCAACAGTTCAGAGCTGCGTGCAAGCTGTTGGAACACATAAAGCTCGCAGCTTGCGAGCAAGCAAAAGAAACAGTTGGACCACAGTCTGATGAGGCCGTCTTGAATGAAATGCTGAAATCCTGCTTTGTTAAACTTGAACGGTTTAATATTGGAAAAGGCAAGGCTATAATGAAGATAGTTGATGAAACTACGAAAAGTAGCAGTGAGGATGACAATTCTGTTGGGGAGGATCATTCCGCTTTTCAAACTGATGAAGAGATATACTATTGCGGCGTTTGCGAGGAGCAGTTTGTATCGTTGTCATCGTTAAGCGACCATGTATGCCGTCGTCGCGAGAAACCGGTCTCGTGCGATATTTGCAGTAAGAAGTTCAGTGCGACCTGTTATTTAATCGAACACCTTCGCGTTCACTCAGGCGAGAAACCCTTTGTGTGTGACGTGTGTAAGAAGCGATTCCACCTGAAACTTACCATGAAAACGCATATTATGACTGTGCATTTGGGAATGGCTTACCCGTGCAAATTGTGCAAGAAAAAGTTTCGCAGCGCTTTCTCATTGCGGAAACATGTTCGCAGTCATACAGGGCAGAAGAGAATAAAGCCGTACTCGTGTAAAGTGTGTAAGAAACGATTCAAGTATGACCGGGAGCGTGTGGAGCACGCCCGAGTCCACACCGGCGAGAAACCGTACGTCTGCAAAGTGTGCGACAAGGGATTCCGTGTGGAATCCGATCTGAGGATCCATAATCGCCACCATACCGGAGACAAACcgtattcgtgtgatgtgtgcAAGAGAAGGTTTCGTATTTGGCAGACGTTGGACGCTCACAAACGCGtgcacacaggtgagaaaccatTCACGTGTGACGTGTGCAAGAAACGGTTCAGACGGTATGATACGTTGGCTACGCACAACCGGATTCACACAGGGGAGAAACCGTACGCGTGCAAGTATTGCCCGAAGAAGTTTACACAGAGAAGTCATTTGAGCACCCATACGAAGacacacacaggtgagaaaaaGTTCAGTTGTACGGTGTGTGATAAAAGGTTTATCGAGAGATCCGCATTGAAGCAACACAGCCGTATCCACACGGGTGAGAGACCTTATGTATGCGATGTGTGTAACAAAACCTTTAGAGTCAGAGAGAGCCTGAAATGCCATAAGCGTTGTCACACGGATGAGAGACCGTATGCGTGCGATGTGTGTAATAAAGCCTTTAGAAAAGGTGCGCACCTGAGAACCCATAAACGTTCTCACACGGGCGAGAAACCGTACGAGTGTAAAGTGTGTAAGATGTTGTGCTCTCAGTCGTCGAATTTGAGGTCGCATATGAAGACGCACGGTAGGAAGAGCCATCCGTTCAGTTGTAATGTGTGTGAGAAGAGGTTCCAGAGCCGCACGTCTTTGGATAAGCATTTGTTGACGGTGCATGATGCGCGTGCGGCCAGCGGCGGCTTTGCAGTCTCGACTGCCCCACCGCCTTAG
Protein Sequence: MTSDLSDLVKEEAAWEAEYVEALYSGRQEPRPEPEGGSERNAAEDFALPASRVCAANTSHLQTKTKATEAIRDPKDATTTHSRPKDTTTTITPKTETEQTTADITTSSEDWFNSRTPKTEVSKVCNVPTTRPSFKDTTSNITATTKVIQSPTDITSPEGTSASNTPRTQVAPVLTNVPTTQSGIDTTANITSKIEPVWTTGNTGTTDTPGTGVATVPSDVPTTNPSLKDTRANAVIQSPTDITSPEGISASNTPRTEVAPLSNVLSTQSSLDTTANITPKIELVSSPEGTNTTNTPRTEVTPVLVNASTTYPIIEDTTANITPKIEPVWTPADTSGGGGAISLKPCYIKLEHLEHIPYKNAFVCPVCPKVCGYKHNLRMHLLVHTQEEINTIKIEKKVMKKGKFNCHICGQGLTRKAHLTKHLNIHTRDPFLEQIRRKQQYHITKTYLECDDCGMRTLRKTSLLKHMQRFHRDGSFACQVCKQQFRAACKLLEHIKLAACEQAKETVGPQSDEAVLNEMLKSCFVKLERFNIGKGKAIMKIVDETTKSSSEDDNSVGEDHSAFQTDEEIYYCGVCEEQFVSLSSLSDHVCRRREKPVSCDICSKKFSATCYLIEHLRVHSGEKPFVCDVCKKRFHLKLTMKTHIMTVHLGMAYPCKLCKKKFRSAFSLRKHVRSHTGQKRIKPYSCKVCKKRFKYDRERVEHARVHTGEKPYVCKVCDKGFRVESDLRIHNRHHTGDKPYSCDVCKRRFRIWQTLDAHKRVHTGEKPFTCDVCKKRFRRYDTLATHNRIHTGEKPYACKYCPKKFTQRSHLSTHTKTHTGEKKFSCTVCDKRFIERSALKQHSRIHTGERPYVCDVCNKTFRVRESLKCHKRCHTDERPYACDVCNKAFRKGAHLRTHKRSHTGEKPYECKVCKMLCSQSSNLRSHMKTHGRKSHPFSCNVCEKRFQSRTSLDKHLLTVHDARAASGGFAVSTAPPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -