Phep024730.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:3234592-3240150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00034 0.022 15.9 0.6 1 23 87 110 87 110 0.97 2 28 1.3 88 4.6 1.6 2 23 137 159 136 159 0.95 3 28 0.0011 0.074 14.3 0.4 2 23 182 203 182 203 0.98 4 28 0.0053 0.35 12.1 0.1 1 23 207 229 207 229 0.96 5 28 0.032 2.1 9.7 0.8 1 19 234 252 234 257 0.89 6 28 3 1.9e+02 3.5 1.6 2 23 265 287 264 287 0.79 7 28 8.9e-05 0.0059 17.7 2.2 2 23 295 317 295 317 0.97 8 28 0.00021 0.014 16.5 2.7 2 23 324 345 323 345 0.97 9 28 0.047 3.1 9.1 0.1 1 17 351 367 351 368 0.92 10 28 0.013 0.88 10.9 1.7 1 23 561 584 561 584 0.94 11 28 6.2 4.1e+02 2.5 0.1 2 23 612 634 611 634 0.93 12 28 0.2 13 7.1 2.6 2 23 657 678 656 678 0.95 13 28 0.00032 0.021 16.0 0.2 1 23 682 704 682 704 0.98 14 28 0.022 1.5 10.2 4.6 1 23 709 732 709 732 0.96 15 28 8.9 5.9e+02 2.0 0.5 2 23 740 762 739 762 0.82 16 28 0.0061 0.4 11.9 3.8 2 23 770 792 769 792 0.95 17 28 4e-05 0.0026 18.8 1.2 1 23 799 821 799 821 0.97 18 28 1.5e-06 9.7e-05 23.3 0.9 1 23 827 849 827 849 0.98 19 28 0.00027 0.018 16.2 5.0 1 23 855 878 855 878 0.98 20 28 3.3 2.2e+02 3.3 1.8 1 23 974 997 974 997 0.93 21 28 6.4 4.3e+02 2.4 0.3 3 23 1070 1090 1068 1090 0.89 22 28 0.006 0.4 12.0 1.2 1 23 1094 1116 1094 1116 0.98 23 28 0.59 39 5.7 0.4 1 23 1121 1144 1121 1144 0.90 24 28 0.011 0.7 11.2 0.6 3 23 1152 1173 1151 1173 0.96 25 28 0.0074 0.49 11.7 0.3 2 23 1181 1203 1181 1203 0.97 26 28 0.0008 0.053 14.7 1.7 1 23 1209 1231 1209 1231 0.94 27 28 0.00015 0.01 17.0 0.5 1 23 1237 1259 1237 1259 0.97 28 28 8.7e-06 0.00057 20.9 4.4 1 23 1265 1288 1265 1288 0.97
Sequence Information
- Coding Sequence
- ATGGGACCTGAAGATGAAGAAACTCTCGCTTCAACATCTAATGGTAGAACACAAATTCCCAGCTCATCGCACTCTGTGAAATCACCGGCCAGTATTTTAACAAGAGATCCAAAGAATATAGTAGAAGTATCAACAGAGTCGCTAAAGAAAACAGAGGGCAGAAAAATGTCGGCGGAAATGGCTAAACTCGTCGCAAATTTCCAAATAGTGATAAGTTGCTCTAACGCGACCCCTTTACGAGCACTCCACGGCCTTAACTACACTTGTTACTTCTGTGATAAGCAATATCCTGACCCAGCCGATCTCAAGAACCACACCTTGAAGTCACACCAGGACTTCCGCCACACGTCATCAATGAGACTGCCCACACTCTACAACTATTCCGTCAAACTCGACATCACTGAATTGACTTGCCGCTTTTGTTTCCAACCATTCGATCAGTTCTTTAAGTTCATGGACCATTTGCGTCTCGAACACGAGCAGCCAATCCACACGGACGTTAAAAACTACATGCTACCTTTTAAATTTGACAGCAACCCTCCCAAATGTGTCTTGTGCGATACTGAGTTCAACACCTTCAGGAATCTCGTTGAACACATGAATATACACTTCAGGAATTTCGTTTGCGAAGTCTGCGGTGCTGGTTTCATCAACAGAGCTAGCTGGAAAACTCACAAAGCCAACCACGACTACGGAGACTTTCCGTGCACGAAATGCCCGCAAGTCTTCAGTTCTATGTTGAAACTGAGGAATCACGATCGCTACCTCCATATGGGGCTAGGCAAGAGGAACAAATGCGCGTATTGCGGTGAAAAGTTCAGTTGTTTGATATTGAAGAACAATCATATGGTCAAAGAGCATGGAGTGGCGAAAATAGCGGCGAAATGTAAAGCCTGTGACAAAACGTTTAGCAACTACGCTAACCTTCGCTTGCACAAAAGAAGGTATCATTTACAAGAGAAGAAAGTCAAGTGCCACGAGTGTGAAATGATGTTCCGTGACTCGCATGCACTAAAAGAACACATGGTTAAGCACACAGGAGTTCGTGATTTCAAATGCAGTATTTGTGATAAGGCTTACGGTAATCCTCGCCTTCTAACTGATAATACGGTTAAACTATTGGATTTGGAAGTAACTGAAATGGATGGTAACGATTTAATAGCCACTCTAATCGAAGGCGATGAAATAGACGACGAACTACTATTAGACGAAGGAACTGATGCAAATCAGGAAGTGATTGAATCAAGACAAGATGAAATACCATCATCTTCACCGTTTTGTACTGAATATATTAGTAAATATGAATCAAATTCACACTCGCCCTCGCCTGATCATAGTAGTGACCAATTTGATCCAGAATCACCTTCAAACGCAGAGAGTATAGATGAATTAGAGGAGATTTCTTCAAATATTGAATACCTAGATGAAACTGAAGTAGAATACCGTTTAACAGAAAGCATTCAACGTTCAAAAGAGACTGAAAAACACAAGGCTAAAATTCAAAGTGGAGACGTAAATGCCGACAAACCTAACAAAAGCTCTAATTTAaatgacattaaaattaaaactgtaaTCAAAGACATGGAGCAATACGATAAACAAGTCCAATACCATCACGAGAATTTGCGTACCGTTCTTCGATGCTCGAACGCTACTACGTTTCTTTGCCGCGGGATATGGTACTTGTGCACTCTATGTCGCACTAAATACACAGATCCTTGCGATTTAAAAGCTCATACTTTAAAAGCCCACAAATCTTTGAAATCCCAACGCAAGTTGTACTCGGCTCGCAAAATGAACCGCTACATCGTGAAACTTGATATCACTGACTTGCAATGCAAGCTATGCTCCATCGAAATCGGCAGTTTGAGGGATTTGATGGAACATCTGTATTCGGATCATGGTGAGCCCATGCACAGGGACCTGCCGAACCATATGATCCCCTTTAAGTTTGATGGCGACGTCTTACGCTGCACTGAGTGTGACCGTGAATTCGCTTTCTTCAAAATGCTGCAGTGCCACATGAATGATCACTACAAGAATTTTACTTGCGAGGTCTGCGACACTGGTTACGTGTCGTTTGGCAGTCTCGTCCAACACATGCGCCTGCATGCCGATGGAGAGTACAAATGCAAATGGTGCCAGAAGCTCTTCCACAACAAACATAAGTTGGCAGACCATGTCAAGTTGGTGCATTTTGGTCATAAGATGAGAAACAAGTGCGCTTACTGCGACATGAAGTTCTTAGTTTTTGAAACTAGAAACAAGCATATGGAGGAGGAGCACGGCTTGAAGGCGCCTGTGGTGCAATGCCAAGCGTGTACGAAAACTTTTCGATCCACAAGACACCTGACAGCACACACGAAGAACTTTCATTTGATAGGGCAGAAGAATCACGAGTGCTCGCTATGCGATAAACGTTTTTCAGCACCGCATATGTTGAAAGCACATATGGCGGTACACTCGACTGAGAAGGAATTCAAGTGCGTCGTGTGTGATAAAGCGTTCTCTAGAAAAAAGACGCTTCGGGAACACGTCAGGATCCACGCTAATGACAGAAGGTTTAAGTGCGAGCACTGCGGGATGAGCTTTGTACAGAAATGCAGTTTAACTGGCCATCTGAAGAGTAAACACACGGATAAGGACAAGGATAAGTTGGGCATAAAGCAACAAAAGTGTGTACTGACGACAAATGTCAAAATCGAATTGCCGAACAAAGAAGACGATACATCAGATGAAGAGACTGCGGATAAAAAACATCCAGATGGCAGAAAGTTATACACAACAGCTAGAGATGTTAAAAAGAATAAAGATCAGAAGCCCAAGGGTCCTACTGATGTAGAAATGCACCGGAACAACATAAGAGTAATCCTAGAATGCACCAACGCGACACCTATACGATGCCACGGCGGCATCGGCTACCAGTGCTGCTTCTGTCCCGAGCAGCACCCCAATCCCGCTGATCTGAAGACTCATACAATAGAAAAGCATGACAGCAAAACAAAGCAAGCATTTATGAAAGGCAAAACCATGTCAGAGTTCTTCGTCAAGCTGGACATCACAGCTCTGTGCTGTAAACTGTGCGGCGCCGAAATAGATGCGTTAGAGCCGCTGATGACGCACCTATCAGAGAGCCACGGGAAAAAACTGTACACAGACATCAGAAGTCATATCCTGCCTTTTAAGTTTAATGACGAAACGTTGCGGTGCATCTTTTGCCCCAACGATTTCAACACTTTCAAAGTTTTACAAGGTCATATGAATGTCCATTTCCGAAACTTCATTTGCGAGACGTGTGACAGCGGCTTCGTCACTCGCAACATGCGACGGAACCACATGAAGACCCACGATACCGGCTCGTTTATCTGTAGTTTCTGTCCCAAAGTTTACGATACGCTCCTCAAACAACGAGCTCACGAAAAGCAGGTTCACAGGCATCCGAAAATGAACCTCTGCCCTTACTGTAACGAGAGGTTCCGAGATTTCACTCAAAAGGTTCGGCATCTCAAGGAGGCGCATGGTGTCCAGAAGGAGTCTCCGAAATGCAAGGCGTGCGACAGAAGCTTCGAGACCATGGCGGCGCTGAGCGTTCACGTCAAAAGGGATCACTTGATACAGAGACCGCACAAGTGTACAGAGTGCGATATGTCCTTCTACGTAAAGGCGCAGCTGAGGAATCATTTCGTCATACACTCTGGTACAAGAGAGTTTGCGTGCGCGGTGTGCTTGAAAACCTTTGGTCGCAAGAAAACGTTGTCGGACCATATGCGAATACATACGGATGATCGCAGACACAAATGCAAGCATTGCGGGATGGCGTTTGTGCAGAAAAGTAGTTTGAGGAGTCATGTGCGGTCCAACCATTCTGAAATGCATCAGGAATAG
- Protein Sequence
- MGPEDEETLASTSNGRTQIPSSSHSVKSPASILTRDPKNIVEVSTESLKKTEGRKMSAEMAKLVANFQIVISCSNATPLRALHGLNYTCYFCDKQYPDPADLKNHTLKSHQDFRHTSSMRLPTLYNYSVKLDITELTCRFCFQPFDQFFKFMDHLRLEHEQPIHTDVKNYMLPFKFDSNPPKCVLCDTEFNTFRNLVEHMNIHFRNFVCEVCGAGFINRASWKTHKANHDYGDFPCTKCPQVFSSMLKLRNHDRYLHMGLGKRNKCAYCGEKFSCLILKNNHMVKEHGVAKIAAKCKACDKTFSNYANLRLHKRRYHLQEKKVKCHECEMMFRDSHALKEHMVKHTGVRDFKCSICDKAYGNPRLLTDNTVKLLDLEVTEMDGNDLIATLIEGDEIDDELLLDEGTDANQEVIESRQDEIPSSSPFCTEYISKYESNSHSPSPDHSSDQFDPESPSNAESIDELEEISSNIEYLDETEVEYRLTESIQRSKETEKHKAKIQSGDVNADKPNKSSNLNDIKIKTVIKDMEQYDKQVQYHHENLRTVLRCSNATTFLCRGIWYLCTLCRTKYTDPCDLKAHTLKAHKSLKSQRKLYSARKMNRYIVKLDITDLQCKLCSIEIGSLRDLMEHLYSDHGEPMHRDLPNHMIPFKFDGDVLRCTECDREFAFFKMLQCHMNDHYKNFTCEVCDTGYVSFGSLVQHMRLHADGEYKCKWCQKLFHNKHKLADHVKLVHFGHKMRNKCAYCDMKFLVFETRNKHMEEEHGLKAPVVQCQACTKTFRSTRHLTAHTKNFHLIGQKNHECSLCDKRFSAPHMLKAHMAVHSTEKEFKCVVCDKAFSRKKTLREHVRIHANDRRFKCEHCGMSFVQKCSLTGHLKSKHTDKDKDKLGIKQQKCVLTTNVKIELPNKEDDTSDEETADKKHPDGRKLYTTARDVKKNKDQKPKGPTDVEMHRNNIRVILECTNATPIRCHGGIGYQCCFCPEQHPNPADLKTHTIEKHDSKTKQAFMKGKTMSEFFVKLDITALCCKLCGAEIDALEPLMTHLSESHGKKLYTDIRSHILPFKFNDETLRCIFCPNDFNTFKVLQGHMNVHFRNFICETCDSGFVTRNMRRNHMKTHDTGSFICSFCPKVYDTLLKQRAHEKQVHRHPKMNLCPYCNERFRDFTQKVRHLKEAHGVQKESPKCKACDRSFETMAALSVHVKRDHLIQRPHKCTECDMSFYVKAQLRNHFVIHSGTREFACAVCLKTFGRKKTLSDHMRIHTDDRRHKCKHCGMAFVQKSSLRSHVRSNHSEMHQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -