Phep025381.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:8881466-8884030[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0064 0.42 11.9 1.7 1 23 136 158 136 158 0.98 2 18 0.0054 0.36 12.1 8.1 1 23 167 189 167 189 0.98 3 18 1.7e-06 0.00011 23.1 0.9 1 23 195 217 195 217 0.98 4 18 0.00077 0.051 14.8 0.9 1 23 223 245 223 245 0.98 5 18 0.0056 0.37 12.1 2.3 1 23 251 273 251 273 0.98 6 18 3.9e-05 0.0026 18.8 3.1 1 23 279 301 279 301 0.98 7 18 1.6e-05 0.001 20.1 3.1 1 23 307 329 307 329 0.97 8 18 1.7e-05 0.0011 20.0 5.7 1 23 335 357 335 357 0.98 9 18 1.6e-05 0.001 20.1 3.1 1 23 363 385 363 385 0.97 10 18 0.00015 0.0099 17.0 2.5 1 23 391 413 391 413 0.98 11 18 3.1e-05 0.002 19.2 4.4 1 23 419 441 419 441 0.98 12 18 0.0013 0.083 14.1 7.2 1 23 447 469 447 469 0.97 13 18 4.5e-05 0.0029 18.7 3.2 1 23 475 497 475 497 0.97 14 18 0.00013 0.0084 17.2 2.1 1 23 503 525 503 525 0.98 15 18 1.7e-05 0.0011 20.0 4.0 1 23 531 553 531 553 0.98 16 18 0.41 27 6.2 2.7 1 20 559 578 559 580 0.90 17 18 6.6 4.3e+02 2.4 1.6 2 23 582 604 581 604 0.91 18 18 0.00013 0.0087 17.2 0.2 1 23 609 631 609 631 0.95
Sequence Information
- Coding Sequence
- ATGTCCTGTGTGGTGCGGGGCATGCAGCGCGCGGAGCTCGGGGTCAAGCAGGAGCCGCCGCAGTCGCCCGAAGacgccgcggcgccgccagTTGACGGTGCAGAGCAGACCATGGTGAAGCAAGAGTGCAGCGACGACACCAACAACAGCTTGGAAGACTCCTGCGCCAGTAGTGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGTTACTGGCGACTGCAATGAAGAGCTTCTTATGCTCATGCTCAGGCCTTGCTCTGTCCGCCTGGATCGCACTCTAGTGGAGAAATACACCACAAGCACACTGCGTGCAACTCCAGAGCACAGATCACACAATAAGCCTCTTGAATCTTATAGTAAAAGGGTTAAAATAGGAAAAAATCACACTCAAGAGAAACTTTATAAATGCAACGTTTGTATGGCACAGTTCTCAAGTAAGTATTATTTGGCTTTGCACAAGAAGTCTCATGGCACCGACACACCAGGGATCTCTTACTGCTGCGGCACTTGCAACAAAAACTTTAAAGGCAAGTGTCATTTAGATATCCATATGCGCAGTCACCTGGGAAAGACTCCTTACAGCTGCGATGTCTGTCAGAAGCAGTTCTCGCAACGCGCGAACTTAAATATCCATAAACGTGTTCATACGAGGCAGAAACCCTACAGCTGTGATGTCTGTCAGAAGCAGTTCTCACTACGGTCGACTTTAGATGGTCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCTGAAGCAGTTCTCACTACAATCGACCTTAGATGATCATAAACGTATCCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCTGAAGCAGTTCTCGCGAAGTTCGCAATTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAGCAGTTCTCGTATAGCTCAAATTTAATTCGTCACAAACTCATCCACATGGGGCAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTCGCACTTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGTATAGCTCAAATTTAATTCGTCACAAACTCATCCACACGGGGCAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTctcgggaagtacgcaattaaATATCCATAAACGTGTTCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCAAAGTGCGCACTTAAATGTCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTGGCACTTAAATATCCATAAATGTATCCACACAGGGGAGAAGCCTTATTGTTGCGATGTCTGTCAAAAGCGATTCTCGCAAAGCGCCTACTTAAATATCCATAAACGTCTCCACACAGAAGAGAAGGCTTACTGCTGCGATGTCTGTCAGAAACAGTTCTCACAATGGTCGACCTTAGATGGTCATAAACGTATCCACATAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGAAACGGTCAAACTTAAATATCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTGCTGCGATGTGTGTCAGCTAAGATTTACTTATAAACATAAGATCGTAGCGCATTTTATGAGCATTTCTTGCGGAGTCTGTAGGCAACAATTTGCTTGCCGCACTTCTTTAAATATACATAAGCAAGACCAGCATGAGAGGAAATCCTTTTCTTGTGCTATTTGTAAGAAAGAGTTTGCTAATAAGAAACAGCTGATGGAGCACGTTGGGATCCACGTGTGGGTGCCGGAACGCGGCGCGCCGGGGACGGCCGGGGCTGAGGGGCGGCCGGggctgcgcggcggcgggggctgCGGGCCCTCCGGGGGCCATCGCACGCTCGAGGACCCGCAGGGGTGA
- Protein Sequence
- MSCVVRGMQRAELGVKQEPPQSPEDAAAPPVDGAEQTMVKQECSDDTNNSLEDSCASSECSGEYLKEEPAVTGDCNEELLMLMLRPCSVRLDRTLVEKYTTSTLRATPEHRSHNKPLESYSKRVKIGKNHTQEKLYKCNVCMAQFSSKYYLALHKKSHGTDTPGISYCCGTCNKNFKGKCHLDIHMRSHLGKTPYSCDVCQKQFSQRANLNIHKRVHTRQKPYSCDVCQKQFSLRSTLDGHKRIHTGEKPYCCDVCLKQFSLQSTLDDHKRIHTGEKSYCCDVCLKQFSRSSQLNIHKRIHTGEKPYCCDVCQKQFSYSSNLIRHKLIHMGQKSYCCDVCQKQFSRSSHLNIHKRIHTGEKPYCCDVCQKQFSYSSNLIRHKLIHTGQKSYCCDVCQKQFSGSTQLNIHKRVHTGEKSYCCDVCQKQFSQSAHLNVHKRVHTGEKPYCCDVCQKQFSRSWHLNIHKCIHTGEKPYCCDVCQKRFSQSAYLNIHKRLHTEEKAYCCDVCQKQFSQWSTLDGHKRIHIGEKSYCCDVCQKQFSKRSNLNIHKRVHTGEKPYCCDVCQLRFTYKHKIVAHFMSISCGVCRQQFACRTSLNIHKQDQHERKSFSCAICKKEFANKKQLMEHVGIHVWVPERGAPGTAGAEGRPGLRGGGGCGPSGGHRTLEDPQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -