Phep010277.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978014.1:14846932-14850108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.7 3.7e+02 2.6 0.9 5 20 89 104 86 106 0.87 2 22 0.0048 0.32 12.3 3.4 1 23 182 204 182 204 0.97 3 22 0.56 37 5.8 6.1 1 23 208 230 208 230 0.94 4 22 1e-05 0.00066 20.7 0.7 1 23 236 258 236 258 0.98 5 22 0.0041 0.27 12.5 2.2 2 23 265 287 264 287 0.95 6 22 0.0086 0.57 11.5 2.5 2 23 297 318 296 318 0.97 7 22 0.00053 0.035 15.3 5.7 3 22 326 345 324 345 0.93 8 22 4.1e-05 0.0027 18.8 0.1 1 23 352 374 352 374 0.98 9 22 0.00028 0.018 16.2 1.8 1 23 380 402 380 402 0.97 10 22 4.1e-06 0.00027 21.9 0.7 1 23 408 430 408 430 0.99 11 22 7.2e-07 4.8e-05 24.3 3.3 2 23 442 463 442 463 0.98 12 22 0.00044 0.029 15.5 3.0 1 23 469 491 469 491 0.99 13 22 8.1e-06 0.00053 21.0 4.6 1 23 497 519 497 519 0.97 14 22 0.91 60 5.1 0.7 9 23 521 535 520 535 0.91 15 22 2.2e-06 0.00014 22.8 2.9 1 23 541 563 541 563 0.98 16 22 3.1e-06 0.0002 22.3 0.3 1 23 569 591 569 591 0.97 17 22 7.3e-05 0.0048 18.0 2.5 1 23 597 619 597 619 0.98 18 22 2.3e-05 0.0015 19.5 4.6 1 23 625 647 625 647 0.98 19 22 2.9e-05 0.0019 19.3 1.6 2 23 659 680 659 680 0.97 20 22 3e-06 0.0002 22.4 0.2 1 23 686 708 686 708 0.99 21 22 1.9e-05 0.0013 19.8 0.1 1 23 714 736 714 736 0.97 22 22 4.8e-05 0.0032 18.5 1.7 1 23 742 764 742 764 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTGGGCTTGGAATGGGTGCAGGTGAAGGAAGAGCCTGTGTGGGAGGATGAAACGTGTGTGGCCAGCGACGCGGCCTCTCGAGCAGGCTTGTACGCCGACCACGAGCTCAAACCAGACATAGTAGTAGGACCAGAAGTACTGCAACCACAAGATGTTTCCTATTCAATTGatgTTCCATTGAAGCAAGAAGTACCAGATACTGAAGATGCGAAGCAGGATCCAATGCAGCTCAGCAATGACATAATACCCAATTGCATAAATTGCCGCAGAGTCTTTGACCATGAATCAGATCTTCTGGGTCATTTCTGCGTAAAGATTGAAGAATTAAATCAGACGCAGCATACACTTCTAACAGAAACAGGGAAAAACACTTTAACACAGCACCCCTGTGAAAAAAATGTTAACTGGGAAGAACTTTTGACTAGCCAGATCAAAGTGCCCACAGGAGACGGATCTAACACTATTCAAGAATGCAAAAAACACTTCAGTACTAATAAGCTGCAGCTGCATGCTGTTGTTAATATTGAACAAAACATATTTCATTGTGATATTTGCAAAAAACTGTTTCGCAGTACGCTAACTTTAAAACAACATATTCAGCTCCATAAAAAGAAATATTCATGTAATATGTGCAAAAACCAATGTAGGAATAattgtgatttaaaaaaacactCAGTCATCCACAAAGAACAGAAAGAGTACTCTTGCGACATCTGCAATAAACAGTTTACGCGAAGGACTGATATAATTTCCCACATGCAAATACATGTTGAATCTAAACTTTGGTCTTGTGAAATTTGCAATGAACAGTTTCACAACAAAGCTACCTTATTACAACATCTGAAACATGTACACAATCAAGAGATACCACACCAAGATAGCACTTGTGAAATCTGTAACAAAGATTTTATATGTAAGACTTATTTGACTGAACATTTGCAAACGCACACAGAAGAAAAACCACATTTATGTGAAATTTGCAACAAATCATTTTTTCACAGTCGCAGTTTACAGAAGCACATGTGTACTCGCACAGGAGAGAAACCGTATCCGTGTTCAATGTGTGACGCTTCTTTTACTCTGAAAAGTGTGTTAGCTATCCATATGCGGATCCATACCGGAGTAAGACCGTATTCGTGCGAAATATGCAAGAAACAATTCAAGCAGGTGGCTCATTTGAAAGGACATAAGTTAGTTCACACAGGAGAGAAGCCATATACGTGTGAAGTGTGTAAGAAGCAGTACTCACAGAAAAACGGTTTAGTTCGCCATATACGCATCCACACGAGAGACCAGAGCAAGAGGAAACCTTGCCCCACATGCGATATATGTCAAAAACAGTTTAAACAAAAGTACCATTTAGCTCGTCATATGCGGGTTCACACAGGTGACAAACCTTATCAATGTGAAATTTGCAGTAAACAGTATTCGCAGGTGACTCATTTGAGTCAACACAAACTCACCCACACAGGCGAGAAACCGCACTCGTGTCCAATATGCAACAAGCAATTTGCGCGGAAAACCCATGTTAACCAGCATATGCGGTCACACACAAGCACAACACAACAAACAAATGTTAACCAGCATATGCGGTCACACAGAAAACAAAGTCTATTTTCATGTGAAATTTGCAACAAAGTATTTAAACAAAAACGCGGTTTGCAGGACCATATGTGTAGCCACACAGGAGAGAAACCGCATCCGTGTTCAATATGTGACGCTTCTTTTACTCAGAAAACTGGGTTAGCTATCCATATGCGTATCCATACCGGAGTAAGGCCGTATTCGTGTGAAATATGCCAGAAACAGTTCAAACAGACGGCTCACTTGAAAGAACATAAATTAGTTCACACAGGAGAGAAGCCACATACTTGTGAGGTGTGTAAAAAGCAGTACACACAGAAAAACACTTTAGTTCGCCATATGAGAAAACACACGGAAGACGAGAGCAAAAAGAAACCTTGCCGCTCATgtgaaatatgtaacaaacagtttaaacACAAGTACGAGGTGGCTCGTCATATGCTGGTCCACACAGGAGAGAAACCTTTTCAATGTGAAATTTGCGACAAAGCTTTTATTGAAAATCGCGGTTTACAGGCGCACATGTATACTCACACAGGAGAGAAACCGCATCCGTGCCCAATATGTGACGCTTCTTTTACTCTGAAAAGTGTGTTAGCTATTCATATGCGGATCCATACCGGAGTAAGGCCGTATTCGTGCGAAATATGCAAGAAACAATTCAAGCAGGCGGCTCATTTGAAAGGACATAAATTAGTTCACGCAGGAGAGGCCACATACATGTGA
- Protein Sequence
- MSVGLEWVQVKEEPVWEDETCVASDAASRAGLYADHELKPDIVVGPEVLQPQDVSYSIDVPLKQEVPDTEDAKQDPMQLSNDIIPNCINCRRVFDHESDLLGHFCVKIEELNQTQHTLLTETGKNTLTQHPCEKNVNWEELLTSQIKVPTGDGSNTIQECKKHFSTNKLQLHAVVNIEQNIFHCDICKKLFRSTLTLKQHIQLHKKKYSCNMCKNQCRNNCDLKKHSVIHKEQKEYSCDICNKQFTRRTDIISHMQIHVESKLWSCEICNEQFHNKATLLQHLKHVHNQEIPHQDSTCEICNKDFICKTYLTEHLQTHTEEKPHLCEICNKSFFHSRSLQKHMCTRTGEKPYPCSMCDASFTLKSVLAIHMRIHTGVRPYSCEICKKQFKQVAHLKGHKLVHTGEKPYTCEVCKKQYSQKNGLVRHIRIHTRDQSKRKPCPTCDICQKQFKQKYHLARHMRVHTGDKPYQCEICSKQYSQVTHLSQHKLTHTGEKPHSCPICNKQFARKTHVNQHMRSHTSTTQQTNVNQHMRSHRKQSLFSCEICNKVFKQKRGLQDHMCSHTGEKPHPCSICDASFTQKTGLAIHMRIHTGVRPYSCEICQKQFKQTAHLKEHKLVHTGEKPHTCEVCKKQYTQKNTLVRHMRKHTEDESKKKPCRSCEICNKQFKHKYEVARHMLVHTGEKPFQCEICDKAFIENRGLQAHMYTHTGEKPHPCPICDASFTLKSVLAIHMRIHTGVRPYSCEICKKQFKQAAHLKGHKLVHAGEATYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -