Phep009367.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978013.1:16355674-16363783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0038 0.25 12.6 0.1 1 23 102 124 102 124 0.98 2 21 0.00035 0.023 15.8 0.4 1 23 129 152 129 152 0.91 3 21 1.7e-05 0.0011 20.0 2.8 2 23 159 180 158 180 0.98 4 21 1.4e-07 9e-06 26.6 1.0 1 23 186 208 186 208 0.98 5 21 0.00061 0.04 15.1 2.2 1 23 214 236 214 236 0.98 6 21 6.2e-07 4.1e-05 24.5 0.3 1 23 242 264 242 264 0.98 7 21 5.3e-06 0.00035 21.6 0.4 1 23 270 292 270 292 0.99 8 21 0.0022 0.14 13.4 1.1 1 23 298 321 298 321 0.93 9 21 0.00087 0.058 14.6 0.7 1 20 327 346 327 348 0.95 10 21 0.0061 0.4 11.9 0.2 1 23 451 473 451 473 0.97 11 21 0.00054 0.036 15.3 0.5 1 23 478 501 478 501 0.97 12 21 4.9e-06 0.00032 21.7 1.2 2 23 508 529 507 529 0.97 13 21 2.4e-06 0.00016 22.6 2.3 1 23 535 557 535 557 0.97 14 21 4.3e-05 0.0028 18.7 3.9 1 23 563 585 563 585 0.98 15 21 9.7e-07 6.4e-05 23.9 0.8 1 23 591 613 591 613 0.98 16 21 0.0011 0.075 14.2 5.1 1 23 619 641 619 641 0.98 17 21 0.00014 0.0091 17.1 0.7 1 23 647 670 647 670 0.94 18 21 0.00032 0.021 16.0 2.8 1 23 676 699 676 699 0.97 19 21 0.0088 0.58 11.4 0.4 2 20 704 722 703 724 0.92 20 21 0.0037 0.24 12.6 1.1 2 23 732 754 731 754 0.95 21 21 0.056 3.7 8.9 1.6 2 21 759 778 758 779 0.92
Sequence Information
- Coding Sequence
- ATGGCGTCTTCAACTACTTGgtgctGCAAGCGAATAAAACACTCACACAGTGACACCAGCATCGAAGATTGTAGGAGCAACGACAGCGTGAATAAAGAAAAACGAGACAGCAAAAAAGAAAGAACAGAGTCAGAAATTAATACACAACCGGAATACAAGCTTGTAACCATTAAACCTGAACCACAATTAAATTTCACAAGCAATACTAACCAAAGAAACAGTAGAACGTCTAAGCCTCGTCCAGTCAAAACTCGATTAGAAGTTACGGAGCGTGATTGGAACACTGCTGATTGCAGCGATCAGTATTCATGTGGCCAGTGTTCCGCATCGTTCAGGACGCTAGCGGACATAAAAGTCCACTTGGAAAGCCACCTTCATCCTTCTTTCGCCTGCGACAAATGCCCAGAAACGTTCATTACTTTAAGACAACTAAATAGGCATTCGCTGCTCAATCATCTAACCAAATGCGACATAAAATGTAATATATGTCATAAAGCATTGAAAAGCAACCGCAATTTGCGGCTTCACCTGCGAACCCATACAGGAGAGAGGCCGTTTGTTTGCAAGCAATGCGGTAAACGGTTCACGCAAAATGGTTCCCTGCAAACGCATATAAAAATTCATTTAGGTTTAAAGGAACACGTGTGCGGTTACTGCAGCAAAGCTTTCATTGAATACAAGAACATGAAGAACCATGAAAGAACGCATACGAAAGAACGGCCTTTCGAATGTCGTCTTTGCGGGAAGAGATTCGGGGACTCATCGGCTTTGATAAGGCACGTACGCACCCATACAGGGAATAAAATATACCAATGCTCACTTTGTCCCATGAAGTTCAGCGATCCAAGCGGTCTCACCGCTCACAAGAAACGTCACGACGGCGTCAAAAGTTACTCCTGTGATTTCTGCGATAAGAAATTTACAACGCAATACATTCTGCTCAATCACGAGTCGTCTATACACATGAAGACACAGAATTTCACTTGTGAATTTTGCAACAAGGATTTCACATTAAAGCAATATTTGAAGAATCACATTGAGGGGAATAATGCAGAAACCGTTACCATATGTACGTCCCCGAAGCGTTTTGATGAAAGTTCTGAGACTTTCGAAACATATACCACAGGCGACCATAAgCAAGAAAGTAAACCAGAATGTGCCACTTCCGACAACAAATCCCAAACAAGGCAGAACAACAAAGCAGCGCCTGGAATCTCTATAAAACTGAAAAACATCGATACTCTTCACACGAAAATCAAATCGAAGCCCTCAAAGGTTATTACAAAGCCGAAACAATTCGGTAAAACTATAAAAACCAAGAAACAACCGAATAAATTGAAAACCACTCAATACACATGTGGACAGTGCCCCAAAACGTACGATAGTCTAGCAGGCATAAGATCCCACTTGACCAGCCATTTCGATCCATCCTTCGTCTGCAGTAGCTGCCCAGATACATTCCCTACCCTAAGAGAACTAAACAAGCATATGAGAAACACACACTTATCTAAACACGAAATACGATGTGACAAGTGCGGTAAAACTTTGAAGAGCAATCGCAACCTGCGTGTTCACCTCCAAACGCACTCCGGCGAGCGACCATTCGCTTGCAAACATTGCGGTAAACGATTCACGCAAAGCGCATCCCTTTACGCTCACACGAAAATCCACCTGGGCCTGAAGGAGCATGTGTGCTCGTACTGCAACAAAGCTTTTACCGAACGTAAAAACATGAAGAATCACGAGCGTACACACACAAAAGAACGTCCATTCGAGTGCCGTTACTGCTTCAAGAGTTTCGGCGACCCATCAGCTCTGACGAGACACGTTCGCACCCACACAGGAGATAAAATATACCACTGCCAAGTGTGCCACATGAAATTCAGCGATACCAGCGGCCTCACAGCGCACAAGAAACGACACGATGACATGAAGCATTATGCCTGTGATTTTTGCGGCAAGCAATTCTCCACGCAACAAATGCTATCCAATCATGAATCGTCACTACACATGAACATTAAGAATTTCATTTGTGATATCTGTCACAGAAGTTTCTCTCTGAAGCAGTATTTAAAGGGGCATATACAACGTAAGCACATGCAGAGTCTGAATTGTAGTAATTGTGGAATGATATTTTACTCCAAGACCTGGCTTCAGAGTCACAAGTCGAAGGGTTGTGTGAGAGACAAGTTGACGTGTGATCTCTGCGGAGCCACGTTTTCCTTGAAGAGGTTCGTGAAGAAACACATGGAGAAGAAACATTTTGAGTCTTTGTATTGTCATATTTGCATGCGGAAGTTTTATTCGGATTCGGATCTGCAGAAACATAAATTAAAGCAGAGGTGTgctaaaaaaaatgtgaaagttGAGATACGTTATGCGCCTAATTTCCTGTGA
- Protein Sequence
- MASSTTWCCKRIKHSHSDTSIEDCRSNDSVNKEKRDSKKERTESEINTQPEYKLVTIKPEPQLNFTSNTNQRNSRTSKPRPVKTRLEVTERDWNTADCSDQYSCGQCSASFRTLADIKVHLESHLHPSFACDKCPETFITLRQLNRHSLLNHLTKCDIKCNICHKALKSNRNLRLHLRTHTGERPFVCKQCGKRFTQNGSLQTHIKIHLGLKEHVCGYCSKAFIEYKNMKNHERTHTKERPFECRLCGKRFGDSSALIRHVRTHTGNKIYQCSLCPMKFSDPSGLTAHKKRHDGVKSYSCDFCDKKFTTQYILLNHESSIHMKTQNFTCEFCNKDFTLKQYLKNHIEGNNAETVTICTSPKRFDESSETFETYTTGDHKQESKPECATSDNKSQTRQNNKAAPGISIKLKNIDTLHTKIKSKPSKVITKPKQFGKTIKTKKQPNKLKTTQYTCGQCPKTYDSLAGIRSHLTSHFDPSFVCSSCPDTFPTLRELNKHMRNTHLSKHEIRCDKCGKTLKSNRNLRVHLQTHSGERPFACKHCGKRFTQSASLYAHTKIHLGLKEHVCSYCNKAFTERKNMKNHERTHTKERPFECRYCFKSFGDPSALTRHVRTHTGDKIYHCQVCHMKFSDTSGLTAHKKRHDDMKHYACDFCGKQFSTQQMLSNHESSLHMNIKNFICDICHRSFSLKQYLKGHIQRKHMQSLNCSNCGMIFYSKTWLQSHKSKGCVRDKLTCDLCGATFSLKRFVKKHMEKKHFESLYCHICMRKFYSDSDLQKHKLKQRCAKKNVKVEIRYAPNFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -