Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421878.1:2667882-2675947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00031 0.02 16.0 1.4 2 23 131 153 130 153 0.94

2 9 0.022 1.4 10.2 7.1 1 23 182 205 182 205 0.96

3 9 9.3e-05 0.006 17.6 1.6 1 23 211 233 211 233 0.98

4 9 1.1 69 4.8 0.3 2 21 233 252 232 253 0.92

5 9 0.29 19 6.6 2.7 1 23 288 311 288 311 0.95

6 9 8.8 5.7e+02 1.9 0.0 1 20 330 349 330 351 0.88

7 9 1.6 1e+02 4.3 1.1 1 20 367 386 367 389 0.87

8 9 0.00022 0.014 16.4 5.6 1 23 475 498 475 498 0.96

9 9 0.035 2.3 9.5 0.4 2 21 505 524 504 525 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00031	0.02	16.0	1.4	2	23	131	153	130	153	0.94
2	9	0.022	1.4	10.2	7.1	1	23	182	205	182	205	0.96
3	9	9.3e-05	0.006	17.6	1.6	1	23	211	233	211	233	0.98
4	9	1.1	69	4.8	0.3	2	21	233	252	232	253	0.92
5	9	0.29	19	6.6	2.7	1	23	288	311	288	311	0.95
6	9	8.8	5.7e+02	1.9	0.0	1	20	330	349	330	351	0.88
7	9	1.6	1e+02	4.3	1.1	1	20	367	386	367	389	0.87
8	9	0.00022	0.014	16.4	5.6	1	23	475	498	475	498	0.96
9	9	0.035	2.3	9.5	0.4	2	21	505	524	504	525	0.92

Sequence Information

Coding Sequence: ATGTCCCCACGTTGCAATGGAGTTAAAACACACTCGAGTAAAAGAGCGGGGAGCGGAGCAAATAATGGTAAAAGGCGATTTAGTGTTGACGCCGCAGCAGCGAAAAGTTACGCGGTTGAAGAAGCTTTCCGTGGCTTTTCGAAGTGCCCTGTAGTTTCCGTGACACGGACTGATATATCGCCGTATTTAAAGAGCATGAGCCATATATCTGCGGCAAAAAGTCCAGTGCACAAGAGTCTATCGAAGTTACAGTTGGCGGTTCATTCGCGAAATTTGGCGGCTAAGTGTACTGTGAGCTTGCTGCGTGAAGACTTAGGAAGCTTAAAGATGGCTTTTCAAAAGGATCCTGACAACCCTATCTTCaatacaactttcaacatgGCCAAACTAAAGTGTAAAATATGTGAAAAAATTTACTCCAGCGAGAAAAAGCTACAAAACCACCAGGAGAATAAACACATGATTATTTATAAGTCCAGCGAGAAAACGCCGAAGCGCGTGTCTTTCTCTGACCATGTGATAGTCCACGAAATGAAGGAATACCACAAATGTAGGAAATGCACCCGGATATTCGAACACTACAAACTGCTGAAGTTGCACATGAAACTAAAACACAAGAAACGTAAGTGCTACATTTGcaattattgtaataaaaactttGTGGATAGGATGTTCTTTAAAGTGCATATAAAGCTGCACTGCGATATTTGCGGTCATCTAGCACCTAACAAATCAAAATATCTAGAACATAGACGTAATATATGCAGAGTCACGAAACTGCACAAGTGTAAGACGTGTGAACTGTTGTTTTTCAAGTTCATGGATCTCAAGGACCATAGTTATGACCATATGCCGCCGTCATATGTGTGCGATGTGTGCAAGGATAAGTTCACAACCAAATGTGCTATAGCTCATCACTTGTTGTACCTCCACGCTGAGAAACGGCCATCTCTTTACGCCATGCGTAACTTAGGTAGCGAACGTCTGTACCTATGCAACTTTTGCGAGGAAAGTTCTGTAGAACGTGACGAGATAGAGACCCATGTAGCAATGCTGCCGGACTTAACGAACCGCGCCATGACTGGTTACAAAGACTTTTATTTCTGTGACCAATGTTTTAAACAGTTTGATGTGGAAACAGATATGCTGCAGCATAAATGGACACATTTTTTAAAGACCAGCGATAATTCCCAACTGAGGCCTAAAGGTGCTAAGCCGAGGCTGTTAAAAAGGATATTCAAGGCAGAAGAGAAAGTCCCGGAGTACATGCAGCCGAAAGTGTTACTGGAGAAGATTAAAGTTGGTGGGAAAGAGTTGACGGACGACATTGATTTTGTTGATGTGAATTGCTTCAATGAGTTGACTGGGGAGATTAAAAAGCCAGTAGTTCATCCGTTGTCCAAAAAGACAATTATTTCACAGCATCAGTGTCAGacTTGCGGCAAGTATTATTCGACGAATTATTGTCTGAATCGACACATTGTTACGCAGCACTCTGACTATGACACACTGAAATGCAAGGTGTGCGAAGAAACCTTCGTCTGGCCGTCCCTCCTCACCAACCATAAATGCATCCGTCTCAGTCTCCCAGAGATACCGTTTGAGGACGCCAGACCGGAGATACACTTTGACAACCTTCATGAGCTGAGGGCTTTTGATGATCTGCCTATAACAGATAATTATATGAACACTGTGGATTTTGAAATCCCAGCGCCTATTGTTGAGCTGGTGGAGTATGAGGGGCAGTACGGGCAGAGCCAGTGCTATAGTagttgtaaaattgtaatgCAAGAAGTACCTATAGAGTTTTAA
Protein Sequence: MSPRCNGVKTHSSKRAGSGANNGKRRFSVDAAAAKSYAVEEAFRGFSKCPVVSVTRTDISPYLKSMSHISAAKSPVHKSLSKLQLAVHSRNLAAKCTVSLLREDLGSLKMAFQKDPDNPIFNTTFNMAKLKCKICEKIYSSEKKLQNHQENKHMIIYKSSEKTPKRVSFSDHVIVHEMKEYHKCRKCTRIFEHYKLLKLHMKLKHKKRKCYICNYCNKNFVDRMFFKVHIKLHCDICGHLAPNKSKYLEHRRNICRVTKLHKCKTCELLFFKFMDLKDHSYDHMPPSYVCDVCKDKFTTKCAIAHHLLYLHAEKRPSLYAMRNLGSERLYLCNFCEESSVERDEIETHVAMLPDLTNRAMTGYKDFYFCDQCFKQFDVETDMLQHKWTHFLKTSDNSQLRPKGAKPRLLKRIFKAEEKVPEYMQPKVLLEKIKVGGKELTDDIDFVDVNCFNELTGEIKKPVVHPLSKKTIISQHQCQTCGKYYSTNYCLNRHIVTQHSDYDTLKCKVCEETFVWPSLLTNHKCIRLSLPEIPFEDARPEIHFDNLHELRAFDDLPITDNYMNTVDFEIPAPIVELVEYEGQYGQSQCYSSCKIVMQEVPIEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325931;
90% Identity: iTF_01136313;
80% Identity: -