Pcor023740.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421876.1:940103-942529[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.017 1.1 10.5 0.6 2 23 315 336 314 336 0.97 2 16 0.88 57 5.1 0.1 2 23 343 365 343 365 0.95 3 16 1 65 4.9 0.3 2 23 371 392 370 392 0.93 4 16 7.6 4.9e+02 2.1 1.1 2 16 440 454 439 456 0.87 5 16 0.0069 0.45 11.7 0.7 1 23 468 491 468 491 0.96 6 16 5.8 3.8e+02 2.5 2.2 1 23 497 520 497 520 0.89 7 16 0.01 0.65 11.2 2.8 2 20 522 540 522 542 0.93 8 16 0.018 1.1 10.4 0.6 1 20 549 567 549 569 0.89 9 16 0.34 22 6.4 1.2 3 23 577 598 575 598 0.94 10 16 3.7 2.4e+02 3.1 0.0 1 19 611 629 611 633 0.92 11 16 0.041 2.7 9.3 3.8 1 23 637 659 637 659 0.97 12 16 0.00047 0.031 15.4 0.4 1 23 670 692 670 692 0.98 13 16 0.012 0.79 10.9 0.6 2 23 697 717 696 717 0.96 14 16 0.1 6.6 8.0 3.9 1 23 724 747 724 747 0.97 15 16 0.0001 0.0065 17.5 6.0 1 23 753 775 753 776 0.96 16 16 4e-05 0.0026 18.8 3.2 2 23 781 802 781 802 0.98
Sequence Information
- Coding Sequence
- ATGCAcaaatttttaatcaaaaaagaAGTTGTTAAGCAACCTGTGTTGCCTGCTGGAATAACTGTCAAGAAAATGAACACACATGTAGATATGACAGACATGGCACCACATGAGCTGTTAGAATTGAACTGGGCTGAAGATACAGACTACGATTCAGCAATACCTAACTCTCATGTTTCTAGAAATCACCTACATAGTAACGAAGCTTTAATAATGGATCTTATGGAGAAAGCGAAAACTGTTGACACCAAAAATATCACGAATTTGAATCATTCTCAAATATTTAACAAAGTACGAAAGTCTAATTCAAATCCAAATGAGTCTTTGACTGTTAACTTGGTTGAGTCACCTGAAGCTGATGATGATCCTACAAATGAAACAGACATTGTGCCCCAAGATTTACTTGAACTGAAATGGCCTGAAGAACAAAAATCTACCATGAAGCAATATATAAAGATCCCtgttaaaaaacttaaatttgatGAAGGTCTAACAGTCAAGTTTATTCCTAAACATAAACTATGCCAGCTCCAGGAAAGCATGAATGATGTGGCACCCTATGAACTACTCGAATTAAATTGGAATGATGAAGCAGAAAAAGCAGGGttagataataatatacaaGTAGATATAGGACAGCAGAAACACAATATAGACCTTACTAAGTGGTTGGAGGATCAAGGAATGAGTACTATAAGAACCAATAAATTTGGTGATAACACggaaaatatgaatattaaagaactTGCGAATATCAAAAACGATTTACAATCATCTATTTACACAAATGTAACTGACAGCACAAATGTTAGTCATGATGATATTATACAAACGCATACAATGAAACCAGAATCTATTGTTGCAGAAGAGAATGGGCAAGATTTTAACACTGATGTTGAAATCAAAGCAATAAACGAACTACACAAAAACAATGTTGAGGTAAGATGTGCGCTTTGCAATTTGATTTTTGACGATTTTAATTCATACACAAACCACtataaaacacataatataaTTGAATCCGCCAAATGCTTTTTATGCCCAATGCAGTTCCCAGTAATCGAGTTACTGTCTGAACATTTACTGTCAACACATTTACAAAACATAACATACTGTAATGTGTGTTTTGCCATGTTAAACCAAGATAAGTTAGCGGAACATATGTCCACATACCATGCCAAGATAGTAGAAATAATCAACGCACCTAATGATAATAATGAAAGCACGGTTTTGAGTTTAGCTGATTATTGCAAGAAATGTAAGCAACCTTTGAAAACTTCGTCATCCGAACCTCATGTTTGCGTGGAAGCCAAATCAAGATGTAAAGAATGCAAACATGTTTGCATACATGAAAAATACTTGGCTTCATACCGCGACCAGCTAAGAGCCAACTTAGATATTTTCCAATGCACTGATTGCCCATTTCAGTACAAGACTAGACGGGAAATAATCCAGCACGCTAACAAAGTCCATTTAGAGCACAAACCACACTTTTGTAAGCAGTGCAACATTGGATTTTTACTTAAAACCTCTTTAGCGAGGCACAATAATCTATACCACGCAAGATGCGATCGCTGCAGAAAAGTATTCAAAGACACAGACGCTCTGAACAAACACAAGTGTAATTTGGCTTCAAAGAATGATTTCAAATGTGAATTATGCGGACAAGCTTTTACTGAATCAAAGTATCAACAGCACAAGGAGACAGCGTTGGCAGCCAATGACGACTGTGACATCTGCCACCAGTCTATACCTATCAAATGTAACATGGCCAGACACATGCAGGACTTGCACAATCTAAGTTTGAAGAGGACGCTCGACGGAACTATTTACGAGTGCATCATATGCGAGGTTGATTTCGTAAATGCTGCAGAGTTTTCGAAACACGCTTGGGTCCATACGGGAGTGCACGAGTGTCACGTTTGCGCGAAGAGGTTCGGCTCCAAAGTTTTATACGACACCCATTATAAGATGCATTTGGCTATTCAGTGTGATTTAGCGAAACAATTCCAGTGTAACGTTTGCGGTGAGCAATTGGTGGACAAATACGCTTACGCGCATCATATGCAGGGCCATAGTGATTACGGAAAGTGTTCTATCTGCTCGAAGTTCGTTAAAAACGATGATCTAAATAAACATATTGAGAAACATGAAGTTACGGATGGCAAATATAAGTGCCCGCACTGTTCTCTTCTGAGCAATAGCCACAGCCAATTTGAGGTTCACGTGAACAGGTTTCATCTTCAAAATCGGCCGTATCAATGCGACGTTTGTAAAAAACGCTTCTACAGCAAACATTTGATGCGCGCGCATATAAGGCAACATCATGTGGGAAACGAGAAGTGCGGTTTATGCGATCGTAAATTCACCAGAAAATGGCATTTGGATTTGCATATGAGATCGCATGAAAACACGCCTTCCAGCTAG
- Protein Sequence
- MHKFLIKKEVVKQPVLPAGITVKKMNTHVDMTDMAPHELLELNWAEDTDYDSAIPNSHVSRNHLHSNEALIMDLMEKAKTVDTKNITNLNHSQIFNKVRKSNSNPNESLTVNLVESPEADDDPTNETDIVPQDLLELKWPEEQKSTMKQYIKIPVKKLKFDEGLTVKFIPKHKLCQLQESMNDVAPYELLELNWNDEAEKAGLDNNIQVDIGQQKHNIDLTKWLEDQGMSTIRTNKFGDNTENMNIKELANIKNDLQSSIYTNVTDSTNVSHDDIIQTHTMKPESIVAEENGQDFNTDVEIKAINELHKNNVEVRCALCNLIFDDFNSYTNHYKTHNIIESAKCFLCPMQFPVIELLSEHLLSTHLQNITYCNVCFAMLNQDKLAEHMSTYHAKIVEIINAPNDNNESTVLSLADYCKKCKQPLKTSSSEPHVCVEAKSRCKECKHVCIHEKYLASYRDQLRANLDIFQCTDCPFQYKTRREIIQHANKVHLEHKPHFCKQCNIGFLLKTSLARHNNLYHARCDRCRKVFKDTDALNKHKCNLASKNDFKCELCGQAFTESKYQQHKETALAANDDCDICHQSIPIKCNMARHMQDLHNLSLKRTLDGTIYECIICEVDFVNAAEFSKHAWVHTGVHECHVCAKRFGSKVLYDTHYKMHLAIQCDLAKQFQCNVCGEQLVDKYAYAHHMQGHSDYGKCSICSKFVKNDDLNKHIEKHEVTDGKYKCPHCSLLSNSHSQFEVHVNRFHLQNRPYQCDVCKKRFYSKHLMRAHIRQHHVGNEKCGLCDRKFTRKWHLDLHMRSHENTPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01136271;
- 90% Identity
- iTF_01136271;
- 80% Identity
- -