Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421878.1:7623111-7643972[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0045 0.29 12.3 0.3 1 23 241 264 241 264 0.96

2 14 0.85 55 5.1 1.2 2 23 273 294 272 295 0.94

3 14 1.2 76 4.7 0.2 1 23 298 320 298 320 0.85

4 14 6.1 4e+02 2.4 0.1 2 12 410 420 409 421 0.89

5 14 6.1 4e+02 2.4 0.1 2 12 424 434 423 435 0.89

6 14 0.0036 0.23 12.6 0.2 2 19 438 455 437 458 0.93

7 14 0.08 5.2 8.4 1.4 2 21 465 484 465 485 0.91

8 14 0.00022 0.014 16.5 1.2 2 23 501 522 500 522 0.95

9 14 0.00019 0.012 16.6 0.3 1 23 527 549 527 549 0.98

10 14 0.00024 0.015 16.3 5.1 1 21 558 578 558 583 0.94

11 14 0.0021 0.14 13.3 1.8 1 23 591 614 591 614 0.89

12 14 0.0031 0.2 12.8 0.3 1 23 620 643 620 643 0.96

13 14 0.046 3 9.1 0.4 3 19 657 673 655 674 0.89

14 14 0.068 4.4 8.6 1.4 1 23 687 710 687 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0045	0.29	12.3	0.3	1	23	241	264	241	264	0.96
2	14	0.85	55	5.1	1.2	2	23	273	294	272	295	0.94
3	14	1.2	76	4.7	0.2	1	23	298	320	298	320	0.85
4	14	6.1	4e+02	2.4	0.1	2	12	410	420	409	421	0.89
5	14	6.1	4e+02	2.4	0.1	2	12	424	434	423	435	0.89
6	14	0.0036	0.23	12.6	0.2	2	19	438	455	437	458	0.93
7	14	0.08	5.2	8.4	1.4	2	21	465	484	465	485	0.91
8	14	0.00022	0.014	16.5	1.2	2	23	501	522	500	522	0.95
9	14	0.00019	0.012	16.6	0.3	1	23	527	549	527	549	0.98
10	14	0.00024	0.015	16.3	5.1	1	21	558	578	558	583	0.94
11	14	0.0021	0.14	13.3	1.8	1	23	591	614	591	614	0.89
12	14	0.0031	0.2	12.8	0.3	1	23	620	643	620	643	0.96
13	14	0.046	3	9.1	0.4	3	19	657	673	655	674	0.89
14	14	0.068	4.4	8.6	1.4	1	23	687	710	687	710	0.96

Sequence Information

Coding Sequence: ATGAAGGAAATAGATATAAACATAGAAGGCTACAATGTTAACGGCATCTGTGTCGGTTGCTTAAACTATAATCGAAAAATGTTCTACagtgaaaaaattaaagaatGTTTGAAATTACTTGGAGATATTGAGGTCCCGGACGGCCTGTCGGTGCAGGTATGCTGGGAGTGCCTGGCGGCCGCGCAGGCCGCGCTTCGCTTCCAGGCACAGATCCTCAAGTCTTATGACATCCTCATTGACTACTCCGGTAAGCACACGTTCCTGAACTGTCCTTCGGACCTGTCTGCGCACGCGCCGCGGCGCCTGCGCAGCACGCAGCCCGAGGCGTACACCGTGGGGGACCTGCCCGCCGTCGAGGTCGATATCAGCATGGTCAAGGAGGAGACCAAGGAGGAGCAGGATTTGGATGAATCAGAAGCGGTCAAGTCTGAACCGGAGTATTTTGACGTGGATTTCTCCcatgaacctgagccaagttcGGAAGATGATATCCAGCTGTCGAAGCTCAAGAAGAAGAAAGAGAAGCGGACCAAGAAGCACAGGAAGAGGAGGGAGGAGGAGATGAAGACTgAGCTTAAAACCGAAAAGCAGCTGCAACGCAACTATAGGAAACTGAAGAATCTGCCACCAGACCTGGTGGAGCTGTACACCATGTCAGAGGAGGAGATGTGGCGGATAAGGGCGGAAGATGTGGACAGCAAGGAGTTCTGCGCCCTCAAGTATCGCTGCAACGACTGCGTCATAGGGTTCAACTCTGAGAAGTTGATGAATGACCATATGCAGGGGAAACATGTGCCGaaaaGCCCTGACTGCCAACAATGCGACGTCTGCAAAGCCTACTTCCTGACGAGGGACAACGTGAACAACCACCGAGCTCTCCACCACGCCGCGTACAGCTGCTCCGAGTGCGGACTCAGGACGGCGCTCAAGCGGCGCATGCTGAGTCACGTGAGCGCGCACAGGAGCGGGCCCGTGCAGTGCGCCACCTGCGGGGAGCAGTTCAGTGCGCCACCTGCGGGGAGCAGTTCAGGTCAGTGGACAGGCGCACAGAGCGCACTCAGGACGGCACTCAAGCATGCTGAGTCACGTGAGCGCGCACAGGAGCGGGCCCGTGCAGTGCGCCACCTGCGGGGAGCAGTTCAGGTCAGTGGACAGGCGCACAGAGCGCACTCAGGACGGCACTCAAGCATGCTGAGTCACGTGAGCGCGCACAGGAGCGGGCCCGTGCAGTGCGCCACCTGCGGGGAGCAGTTCAGGAGCGGGCCCGTGCAGTGCGCCACCTGCGGGGAGCAGTTCAGGAGCGGGCCCGTGCAGTGCGCCACCTGCGGGGAGCAGTTCAGCACGAAGTCGAAGCTGTCGTACCACAAGGGCGTGTGCAACCAGAGCAAGCCGCGCTGCGACTGCTGCGGGAAGCTGTTCGCGAACAAGATGACGCTCAAGTACCATCTCCGAGTACAACCTCAGAACAAAGAAGAGAAACCGAAGGAAAAGCTTTATATCACATGTAAAGGCTGCGACAAAGTGTTCCACTCCAAGAAGAGCTACCGAGCGCATGTGGTGATCCACGACGGTCTGACGTACCCCTGCCCCATCTGCGGCAAGTTGTTCCAGTGGAAGAGGAACCTGGCCAGGCATACGAGGAATCACaggGACCGCGACCAGGGCGCGACGCACGAGTGCCGCGAGTGCGGGAAGACGTTCAGCAGCCGCGACTGCTACAACAACCACATGAAGCTCAGCAAGCGGCACGTCGGCGAGGACGCCTACGTGCACGAGTGCTCGTACTGCGGCAAGAAGTTCGCGACCAAGTGGTGCATGGTGGACCACGTGGACTGGGACCACCTGAAGCGCATCAAGTACCAGTGCAGCGTCTGCTTCAAGgcGTTCAAAACGGCGAAGATAATGGTGGCGCACATGAACAACATCCACGAGGGCAGGAAGAACCGCGAGCCCGACGGGGAGCACCTCTGCGAGGTCTGCGGGAAGTCCTACAagaCAGTGAAGCGGCTAAAGGGGCACGTGTGGGCGATGCACACCAACCGCTCCACCACCAAGAGCTTCAAGTGCAAGCTGTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACACCAAAATGATGCACGACGGCAAGCGGGCCAAGcAATTCCGGCCGATCCCGATAAAGAAGCAGGAGGCGTACGGCGCGCACTACTACCCGCAGCCCgcggctgcgcccgcgcagctcgTGCAGAACATCGTCTAA
Protein Sequence: MKEIDINIEGYNVNGICVGCLNYNRKMFYSEKIKECLKLLGDIEVPDGLSVQVCWECLAAAQAALRFQAQILKSYDILIDYSGKHTFLNCPSDLSAHAPRRLRSTQPEAYTVGDLPAVEVDISMVKEETKEEQDLDESEAVKSEPEYFDVDFSHEPEPSSEDDIQLSKLKKKKEKRTKKHRKRREEEMKTELKTEKQLQRNYRKLKNLPPDLVELYTMSEEEMWRIRAEDVDSKEFCALKYRCNDCVIGFNSEKLMNDHMQGKHVPKSPDCQQCDVCKAYFLTRDNVNNHRALHHAAYSCSECGLRTALKRRMLSHVSAHRSGPVQCATCGEQFSAPPAGSSSGQWTGAQSALRTALKHAESRERAQERARAVRHLRGAVQVSGQAHRAHSGRHSSMLSHVSAHRSGPVQCATCGEQFRSGPVQCATCGEQFRSGPVQCATCGEQFSTKSKLSYHKGVCNQSKPRCDCCGKLFANKMTLKYHLRVQPQNKEEKPKEKLYITCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRDRDQGATHECRECGKTFSSRDCYNNHMKLSKRHVGEDAYVHECSYCGKKFATKWCMVDHVDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGRKNREPDGEHLCEVCGKSYKTVKRLKGHVWAMHTNRSTTKSFKCKLCPATFTWQTSIYKHTKMMHDGKRAKQFRPIPIKKQEAYGAHYYPQPAAAPAQLVQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -