Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421878.1:484133-500783[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.015 0.95 10.7 0.7 1 23 371 393 371 393 0.92

2 10 0.046 3 9.1 2.3 1 23 400 422 400 422 0.98

3 10 5.5e-05 0.0036 18.3 0.6 1 23 463 486 463 486 0.96

4 10 0.62 40 5.6 0.1 3 23 493 514 492 514 0.87

5 10 0.01 0.66 11.2 0.1 2 20 523 541 522 543 0.94

6 10 0.00013 0.0087 17.1 2.5 1 23 582 605 582 605 0.95

7 10 0.0011 0.073 14.2 0.2 1 23 630 652 630 652 0.98

8 10 1.8e-06 0.00011 23.0 0.6 1 23 658 680 658 680 0.98

9 10 1.2e-06 8e-05 23.5 0.5 1 23 686 709 686 709 0.96

10 10 0.88 57 5.1 0.2 2 23 715 736 715 736 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.015	0.95	10.7	0.7	1	23	371	393	371	393	0.92
2	10	0.046	3	9.1	2.3	1	23	400	422	400	422	0.98
3	10	5.5e-05	0.0036	18.3	0.6	1	23	463	486	463	486	0.96
4	10	0.62	40	5.6	0.1	3	23	493	514	492	514	0.87
5	10	0.01	0.66	11.2	0.1	2	20	523	541	522	543	0.94
6	10	0.00013	0.0087	17.1	2.5	1	23	582	605	582	605	0.95
7	10	0.0011	0.073	14.2	0.2	1	23	630	652	630	652	0.98
8	10	1.8e-06	0.00011	23.0	0.6	1	23	658	680	658	680	0.98
9	10	1.2e-06	8e-05	23.5	0.5	1	23	686	709	686	709	0.96
10	10	0.88	57	5.1	0.2	2	23	715	736	715	736	0.74

Sequence Information

Coding Sequence: ATGGTCGTGTGTGCTGTGCCTGGTTGCGGTAATAATTCAGATGCGACTCCAAACTATACGTTCCATCCGGTCCCTAAGTCCTTGATGTCTCGAGCTCGCTGGATCATAGCCCTCGGCCCCATGCTGAGCACGGCTCGTGTCTGCAGCCGGCACTTTGAAGCCAGTATGTTCAAGAAGTGCGGAGACACAATGAAACTGGTGCATAAAGCTGTGCCAACCCTGTTCTTGGATCCTTCGCCGATCGAAGAAGCGAGTCATTTTACTGAAGTCTTTGATGATGAGACGGTGGGCGAAGAATCAGCTGATGAGGTGGTGGCTTGCCGCGTGTGCCTCGCGGTGGACGGCCGCCTGAGCGCTGTGAGCAGCGCCATGGAAGACACGCTAGCAGCCCTCACCGGGGTAGCCATGCCGGAGGCGGGGCGCTGGCCGCGGCACCTGTGCGTGTTCTGCGTCGCGAAGCTGTCAAAGTGCGCCGCCTTCCGCGACAGCTGCCGGCGGAGCACCGCGCTGCTGCGCACCCTGGCGGAGAGGGGACCGTTAAAAATGAATGATATCAAGGCTATTGATAGACATTCATACCAACTGACTAACAGCCTGGCTTGTCATAAAGTGTTTGAGTTCAACTCTGACCCGTTAATAGAAGTGAAGCCTACGATCAAAATTGAAAGAGTGGACTCAGTCGATGGAAATGACAACGAATGCACTGAAGTATCATATGTGAATGATGATTTTGTAAACGTTCCCAATGCGGAGCAAGCGTTGGAAATGGTAGTTGAGAAACAGGAGAGTGTGAAACAAGAGAAAGGTAAAAAATGTGAGAAGGCTAAAACTAATGCTAAAATTGAAAGTCGTGATGGACAATCGAATACGGATGATGAAGAATCGAATAGCGAGGATATCGGTGATGATTTTGATTCGGAGACGTCAGAAGAAACTGTTAAAGTTCGAAAGAAAATTGaactgattaaaaaaataccaaataaaactgtaaaaagTCCGCGTATTGATATGAAGGCTTTCGAGGAGAGATATAATGTTGAATATAAATTTATGAGTAAAGAGGAACAGGTGAAGGAGATAGAAGATAGGAAAATTGGGAATAAGCTGAAGTATTGCTGTGACATGTGCGGTCGGGGGTACAACAGGGAACAGGCCATGGTGAACCACATGTGGACACACGACCCGAGGGTGGGCCCGTTCGAGTGCGGCGTGTGCCGGCAGCGGTTCCCGTTCTCCCACAAGCTGCTGGGGCACAGCCGGCGGCACCGCGACCGGTTCCTCTGCCGGGAATGCGGGCTGGTCAGCCGAGACAGGGTTATTCATCAGACTGTTGACTTTGACAGCACTCGCGTCAAAAGTCACTTCAAGGAGCACGAGGGCGGGTCGCACGCGTGCCCGTACTGCAGCGAGGCGTACGTGCGCAAGGCCTCGTACTTCAACCACATCCGCACGGCGCACCCGGAGCGCAACGAGGCGTGCGACGAGTGCGGCGAGACCTTCCTCTCCGCTCTAGGCGTGCGGCAGCACAAGCGACTGGCGCACAGACCGATCGACGAAGCAGCGTTGAAATGCAAAGATTGCGGTGTCAAGTTTTTGAATGCGGAAGCACTTCAAAAGCACTTGGATTTGAGCTATCTTGAGCCTGCGCACGCGGCGCTGTgggcgtgcgcggcgtgcggggacAGCTGCGGCAGCGAGGCCGGGCTGGCGGCGCACGCGCAGGACAAACACCCGCCCGACCAGCATTATTGTAATGAGtGCAAAAAGACTTTCCGTGACGCGTCGTCTTTCGCGCTGCACGTGGAGCGCAAGCACCGCGGCATGCGCACCTCCGTCGGGGTCTTCCGCCGGAAGCTGCGCTGCAAGGACCGCGCGAGCCGCACGCTTTACATCTGCGAGATGTGCGGCTGGAAGACCATGGTCGCCAAGCAGCTGGAGCGGCACCGCAACTCGCACCTCGGCATCAAGCCGTTCCCCTGCACGGTCTGCGACAAGAAGTTCCCCACCAAGCACGCCCTGaagATCCACATATTGGTGCACACAGGCGAGCGGCCCTTCCAGTGCAAGCAATGCCCCCAGGCATTCACCTCGCCGAGCAACCTCTGGAGACACAAACAGAACGTGCATATGCGGGTGCAGGCGACGTGCAAGTACTGCGGGAAGAGCATGGGCGCCTCCTCGCTGCCGCTCCACGTGCGCACCATACACCTCAACCAGCCGCTGCCTCCGCGGAAGCGGGACCGGAAGACCGAGAACAGGCGGAAACGATCCCCCGACtcgtag
Protein Sequence: MVVCAVPGCGNNSDATPNYTFHPVPKSLMSRARWIIALGPMLSTARVCSRHFEASMFKKCGDTMKLVHKAVPTLFLDPSPIEEASHFTEVFDDETVGEESADEVVACRVCLAVDGRLSAVSSAMEDTLAALTGVAMPEAGRWPRHLCVFCVAKLSKCAAFRDSCRRSTALLRTLAERGPLKMNDIKAIDRHSYQLTNSLACHKVFEFNSDPLIEVKPTIKIERVDSVDGNDNECTEVSYVNDDFVNVPNAEQALEMVVEKQESVKQEKGKKCEKAKTNAKIESRDGQSNTDDEESNSEDIGDDFDSETSEETVKVRKKIELIKKIPNKTVKSPRIDMKAFEERYNVEYKFMSKEEQVKEIEDRKIGNKLKYCCDMCGRGYNREQAMVNHMWTHDPRVGPFECGVCRQRFPFSHKLLGHSRRHRDRFLCRECGLVSRDRVIHQTVDFDSTRVKSHFKEHEGGSHACPYCSEAYVRKASYFNHIRTAHPERNEACDECGETFLSALGVRQHKRLAHRPIDEAALKCKDCGVKFLNAEALQKHLDLSYLEPAHAALWACAACGDSCGSEAGLAAHAQDKHPPDQHYCNECKKTFRDASSFALHVERKHRGMRTSVGVFRRKLRCKDRASRTLYICEMCGWKTMVAKQLERHRNSHLGIKPFPCTVCDKKFPTKHALKIHILVHTGERPFQCKQCPQAFTSPSNLWRHKQNVHMRVQATCKYCGKSMGASSLPLHVRTIHLNQPLPPRKRDRKTENRRKRSPDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01134874;
90% Identity: iTF_01134874;
80% Identity: iTF_01134874;