Pcor023493.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:7390738-7403764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.2 77 4.7 0.3 2 22 2 22 1 24 0.89 2 27 1.1 71 4.8 0.3 2 23 49 71 48 71 0.92 3 27 0.14 9.2 7.6 0.6 2 23 156 178 155 178 0.91 4 27 0.48 31 5.9 0.3 2 23 203 225 202 225 0.95 5 27 4.2 2.7e+02 3.0 0.0 3 19 271 287 270 289 0.95 6 27 1.3 81 4.6 0.0 2 23 319 341 318 341 0.89 7 27 0.055 3.6 8.9 0.7 2 20 365 383 364 386 0.89 8 27 0.041 2.7 9.3 4.1 2 21 391 410 390 413 0.94 9 27 1.1 68 4.8 0.3 1 22 417 438 417 438 0.93 10 27 0.034 2.2 9.5 1.6 2 21 453 472 453 473 0.94 11 27 0.24 16 6.9 0.3 1 23 514 536 514 537 0.93 12 27 0.3 20 6.6 0.6 2 23 563 585 562 585 0.95 13 27 0.034 2.2 9.5 0.4 2 23 608 629 607 629 0.94 14 27 0.00049 0.031 15.3 0.0 1 23 633 656 633 656 0.97 15 27 0.093 6 8.2 2.1 1 23 660 683 660 683 0.97 16 27 0.61 40 5.6 0.8 1 23 688 713 688 713 0.94 17 27 0.59 38 5.6 0.2 2 23 770 792 769 792 0.94 18 27 0.0011 0.071 14.2 0.4 2 23 862 883 861 883 0.96 19 27 0.05 3.3 9.0 0.4 1 21 887 907 887 908 0.94 20 27 3 1.9e+02 3.4 0.1 1 23 949 972 949 972 0.92 21 27 0.27 17 6.7 0.2 2 23 998 1020 997 1020 0.95 22 27 0.041 2.6 9.3 1.6 2 23 1044 1065 1043 1065 0.94 23 27 9.5e-05 0.0061 17.6 0.0 1 23 1069 1092 1069 1092 0.97 24 27 0.015 0.99 10.6 0.6 1 23 1096 1119 1096 1119 0.98 25 27 7.3 4.8e+02 2.2 1.3 1 23 1124 1149 1124 1149 0.91 26 27 0.16 10 7.5 5.7 1 22 1158 1179 1158 1181 0.88 27 27 0.0066 0.43 11.8 0.2 1 23 1191 1214 1191 1214 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGTGTGTACTGCTGTGAGGGTTTCGATGATCCTACTCTGTATAGAAAACATATGGGAGATGAACACAAAACGTTCAAAGTGCGCATGGCTTTCGTCCACTGTAGCGAAGGTTTTATTAAAGCAGATTGCACAGACCTGCGCTGTCGACTCTGCACAGAGCCCTTCGACACCTTAGAAGCTGTCGCAAGCCACTTGCATCAAGAGCACGACATGAAATTAAACCTTAATTTCGAGCTCGGCATGCAGCCATTCAAACTCGAAAAAGACAAACTCCTATGCGCTATGTGCGATACGAAATTTCCGTGCATTCGTCAACTGAACAaactggcatatcaaagtgcaaagtgctggaggatttacAAAAAATCGGTCTCCAATGCTACCATCGAGAGACGAAACGCCGAGTTAATAGTGCTCTACTCAACCGCGTACCCGTTCAGGCTACCCGGCAAACTCATGGTGTGCGTGTATTGCTGCGAGAAATTCGAAGACCCCTCGTTGTTCAGACAGCATATGGACGGCGAGCACCAACAGTTTAATGTTTGGATGGCTTTCGTCCATGTGTCTGACGGAGACTTGAAGGTCGACTGCACCGATCTCCGATGTAGAACTTGTTCCCAACGCTTCCCTAAGTTAGAAGACGTGGCCGAGCATCTGTTCACAGTCCACAACCACCCGTTAGATCTAAATTACTACCTAGaaACTGGAGAAATCAGTCGCTTCCGAATGGCGAAACGGAACGCCGAGGTAATCTTGCAGTACTCGACCGTGTATCCGTTCAGGCTGCGCTCTAAGTCGATGTTTTGCGTTTACTGCGACGATGAGTTCGAGGATCCGGCGGAGTTCCGAACACATGCGGTCGCGTGCCAACGCTCCTTCCCCTTCGCCAAAGCCTTCGCGTACAGCCTCCGCAACCAGGAACACCTCAAAGTCGAGTGCTCTGACATGAGCTGCCGCGTCTGCAATATCCCTTATGACACGCTGGAAGACATGGCGCAGCATATTTTCGATATTCACGAAAACACTACCCTAAACCTAACATACGATTTGGGTTTGCAGCCTTACAAACTAGACCAAGACAAGTGGTATTGCTTCATATGCCAAAAGAAGTTTCCATCTCTTACCAAACTAGGGAGACATACGCCAACTCATTATAGAAAGTGCACTTGTGAGATCTGTGGACGAACGTATCTGACGAAAGAAGCCTTAAAGTACCACATGAGGTGCAGCCATTCTGATAACCACGCTTGTCGGAAATGCTGGCAAGAGTTCCCTTCCTTAGTCGAAAAGAAGGACCATATCAGATCTTCGAAACCTTGCTGGCCTTTTTGCTGCATATATTGCGGAGAAAGcTGTGATAAGTGCGGTACGACCTTTATGTCAGATCACGCTTTGCGCGACCATCATCGTCAGGTCAAGTGCTGCAGGACGGCGTACAAAGCTCGTAACGGTAGAGTTATGCGGTCCCGGCGGAATGCAGAGCTGATACTGCAGTGGTCTACCGCTTGCCCTTTCAGAACATGGAAGAGTAATTTCAGCTGTGTATTCTGCCGCGTACAAACGAGTGATCCAAGTGGTCTTCGGAGCCACGTGGCTGCTCATCACGCCGATTATCACGTTCAAGACGCTTTTTACAGAAAACTAGGAAAGGAATTCCTTAAAATTGATATCACTAATCTACATTGCAAACTTTGCTTTATGCCTATTGAATCATTAGACGCTCTGACAAACCATTTAAAAACCGACCATCAACAGCCTATAACAGACGAACAGCTTGGTGTTATACCGTTCCGTCTGAATGACGGGTCTATTTGGAAGTGCACTATTTGTCCGAATCAGTTCCAAGACTTTGTATCACTGAAGAAACATACTGCCGAGCATTTACAAAACTATGTGTGCGATACGTGTGGAGAGGGGTTCATCACTGAATCCGCTATGATTGCTCACACTAAGATACCGCATGAAAACAAATATAACTGCAGCCGGTGCGTGGCCACTTTCTCGTCACTGGACGAAAGAAACCACCATGTAAAAACTCAGCATACAAACACACCATACATGTGCAATTATTGTAAAGATAAACCTCGTTTCTCGAATTGGGAACTCCGCAAGAAACACTTGATGGAAGTCCACAACTATACTTCCGggCCAAAGGAAAGAGCGGAACGTACTGAGACTGAACGTAAATCGAAAAAGAGACTATTCGAAAGATCGGTTAACCAGAACCCGCAGCGTCAAAACGCTGTACTGATACTTAAGTACTCTACCGCGTTCCCTTTTAAAACACGTTTTAATAGGATAGTCTGTTCGTACTGCCATGACGAGTTTGAGCCTATGACGGCGTTGAGGAGTCACATCAAAGCCGACCACGCAAATGCTGATTACAATAGCGCATTCTACAAGGTTGTAGACGCCTTGAAAATAGATATAACTGAATTCAAATGCAACCTGTGCTCACAAGACATCCAAAGCGTAGAAATATTTATGAATCACCTGTCTCGGGATCACGGTAAAACGGTTAACTTTGAAGTTCCGTTTGGAGTGCTACCCTACAGGCAGGGACCCACGGGGCTATGGATGTGTTTGGATTGCGATAAAACGTTCTCCGAATTCTCCCAAATAAATGGTCATTTGCGGAGTCATGTTAAGATATTCACTTGCGAGAAGTGTGGAGCGACGTTCTTGTCCGAACATGGTTTGAGACAGCACGAGCGAAACTTCAAGTGTTACAAGGCAACTTATAAACCTCGCTTCGGGAAGGCACTGAAGCATCGTAGCAATACTGAGATAATTCTACAGTGTTCTACAGCTCGGCCATTCAGGACATGGGGTCAAAATTTCAATTGCGTTTTCTGTCGTGTGCAATCAAACGATCCGAATGGTCTGAGAATGCATATGGCAGCAAGACACGCCAATTTCAACATACAACATGTCTTTAGTCGTAAATTAAGAAAGGAGTTCCTCAAAGTAGACATCACAGATCTACAGTGTAAACTGTGTTACCTACGAATAGATACTCTTGACGATCTTATAACGCATCTCAAGAATGACCACAAACAGCCTATAAATGCAGACGTACAACCAGGCGTGCTTCCTTTTAAACTAAACGACGGAACTCACTGGAAATGCGCCATATGCACATGTCAGTTCTCAGATTTTATCTCGCTAAAGAAACACACGGCGGAACACTTCCAGAATTTCGTCTGTGACACATGCGGCGAAGGTTTTATCACGGAGTCAGCTTTAATAGCCCACACTAAAATACCACACGACAACAAATATAGTTGCAGCCGGTGCGTCGCCACTTTCACCACTTTGGAGGAGAGAAACATCCACATCAAAACACAGCACACTACCCTACCTTACATGTGCGCGCACTGCAAAGATAAACCTCGGTTTGCTACTTGGGAACTCAGGAAGCGTCATCTCATGGAGTTTCATAATTACAAGCCTGGGGCTGAAATGTACGAGTGCACGACTTGCCACATGACTTTCAAGACTAGGTCTCAGAAATATCACCATAACGTTAAAGCCCATAGGACTAAGAAAGAGACAGAGTATGGATATCCCTGTGGTAGCTGTTCTAGAGCTTTTGCTACTAAATTGTCGTTGGATAAACATATTGCCAAGAAGCATTTCCACGTTTGA
- Protein Sequence
- MVCVYCCEGFDDPTLYRKHMGDEHKTFKVRMAFVHCSEGFIKADCTDLRCRLCTEPFDTLEAVASHLHQEHDMKLNLNFELGMQPFKLEKDKLLCAMCDTKFPCIRQLNKLAYQSAKCWRIYKKSVSNATIERRNAELIVLYSTAYPFRLPGKLMVCVYCCEKFEDPSLFRQHMDGEHQQFNVWMAFVHVSDGDLKVDCTDLRCRTCSQRFPKLEDVAEHLFTVHNHPLDLNYYLETGEISRFRMAKRNAEVILQYSTVYPFRLRSKSMFCVYCDDEFEDPAEFRTHAVACQRSFPFAKAFAYSLRNQEHLKVECSDMSCRVCNIPYDTLEDMAQHIFDIHENTTLNLTYDLGLQPYKLDQDKWYCFICQKKFPSLTKLGRHTPTHYRKCTCEICGRTYLTKEALKYHMRCSHSDNHACRKCWQEFPSLVEKKDHIRSSKPCWPFCCIYCGESCDKCGTTFMSDHALRDHHRQVKCCRTAYKARNGRVMRSRRNAELILQWSTACPFRTWKSNFSCVFCRVQTSDPSGLRSHVAAHHADYHVQDAFYRKLGKEFLKIDITNLHCKLCFMPIESLDALTNHLKTDHQQPITDEQLGVIPFRLNDGSIWKCTICPNQFQDFVSLKKHTAEHLQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRKKHLMEVHNYTSGPKERAERTETERKSKKRLFERSVNQNPQRQNAVLILKYSTAFPFKTRFNRIVCSYCHDEFEPMTALRSHIKADHANADYNSAFYKVVDALKIDITEFKCNLCSQDIQSVEIFMNHLSRDHGKTVNFEVPFGVLPYRQGPTGLWMCLDCDKTFSEFSQINGHLRSHVKIFTCEKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVFCRVQSNDPNGLRMHMAARHANFNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDTLDDLITHLKNDHKQPINADVQPGVLPFKLNDGTHWKCAICTCQFSDFISLKKHTAEHFQNFVCDTCGEGFITESALIAHTKIPHDNKYSCSRCVATFTTLEERNIHIKTQHTTLPYMCAHCKDKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGSCSRAFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -