Pcor016230.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421866.1:2791418-2802739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 1.4 10.1 3.0 1 23 297 319 297 319 0.96 2 12 0.00011 0.0074 17.3 0.4 2 23 327 348 326 348 0.94 3 12 0.087 5.6 8.3 0.8 1 23 352 374 352 374 0.97 4 12 0.0005 0.032 15.3 0.9 1 23 379 402 379 402 0.98 5 12 0.013 0.83 10.9 0.1 1 23 406 429 406 429 0.94 6 12 0.0085 0.55 11.4 0.1 2 21 447 466 447 471 0.92 7 12 0.13 8.5 7.7 0.3 3 23 481 502 481 502 0.93 8 12 0.2 13 7.1 0.3 3 23 522 543 521 543 0.97 9 12 1.2e-05 0.00077 20.4 0.5 1 23 554 576 554 576 0.98 10 12 3.4e-05 0.0022 19.0 2.7 1 23 582 604 582 604 0.99 11 12 0.013 0.81 10.9 2.7 1 23 610 632 610 632 0.98 12 12 5.9e-05 0.0038 18.2 0.2 1 23 638 661 638 661 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACGTGAGAGTGTGTCGGATATGCCTCGTCGTAGGTGTAAAGATGCACAACTTGCATTCATATCCTTTCAATGGTTACTTTGAAGCCCTAGTTGGAATCAACCCATTAAGTATGATGGAGCTACCTCAGTACGGTTGTTTTGAGTGCACCGCGCTAGTGATCAAGCTGTACAAGTTCCGGGAACGCTGCTTCGTGGCACAGTCTGAGCTGTGTGCGCTACTACAAGCTACGggcaaaATCACTATTGAAACCTTAAGCAGAGTGAACCGTGAACGGTTAAAACTAACTTCCAATTTGAGTGTACAAACCAACAACAGAATATATGATTTCATTGAAACTGACACAGTTGATGTTAAATTAGAAACATCGAAAGTAAATATACCTGTCAATTACTTATTGGAAATAAGTACTATTAAAGAAGAAGGCAACAATTATTATGATGAAGAAACAAATTGTGATGATTTTGTGGTAGGTTCGGTATCTAGTGACGATGAGCCTCTCGCGCTACGTAAAAGtcagaaagagaagaagaaatCTGAAAAGAGACGGGAGAAGAAAGGGAAGAAAAGAAAAGATCCCATTGAAGAAGCCGTCTTGGACTATAGTGACGAATTGCAAGGAACTGAGtCCGTCACTCAAATAGCTCTCGAAAGCGAAGAGCTGCCAGTGATGCCCCCAAAGCGAAAGCGTGGCCGGCCGCGACTGACGGAACCGAAAGAGATAGAAGTCAAACAGAGAGACAGACGCACGAAGAACACCGGAGGTGTCGTAGCCGAAGATATTGACCTGGAGGAATACGTCACCATTGTCAAGTTGACGACGGAAGAGCAGTTAGAAGAAATAAACAAGCGGCAGCAGTCGTCTAACTATCTGAACGCCCCGTTCCAATGCAACCTGTGCTACAAAGGCTTCATAGACACGCATGCGTGGAAGCATCACGTTGGGAAACATGACCTGAGCGCAGGCGACGTGGAGTGTCCGATTTGCAAGTTCCGTTTCCGCTCCAAACGTGCGCTCCAAAAGCACGCCGCTAACCACGAGAAGAAGTACGCCTGCAAGTCCTGCCCTTACATCTCTAAGACCACGACACAGGCTAAACAACATCAGAGGTGGCATAAAGGAGTGACGTACAAGTGCCAATATTGTGATGAGGTCTCCACTAAATGGACGTCGTACCTGAGCCATGTCAGGATAAAGCATCCTTCGGAGTTTATATGCGGCGTCTGCGGGTACTCCTACGTCAGCAAACTGGGGCTCGCCATGCACAAGACTATGATGCACAAGGATCTTGTTGAAAAGACTGAGCCTGAAGGCGAGCAGGAGCCGGGCCCGTACTGCCAGGAGTGCGACGTGCAGTTCGTCTCCGCGGAGGCCTGGAAGCGGCACATGGTCACGTCCGCCAAACACGCGCCCGCTAACGACTTCAAGCACGGTTGTCGCGCGTGCGGCAGCATATTCGCGAGCGCGGAGGAGCTCCGCTTACACCACCGGGCGGAGCACGCGCGTCGCCGACCCAAGAACTACGGCAAGAAGCGGGAGGGCGCCTGGCCCGCCGCCTGCGAACACTGCAACGAGGAGATACCGAACGCGCGCGAGTACTGGACGCATTTCCGTCGCGTTCACCCCGACAAGACTTATCCCATACAGAAGAACTACATCTGCGACATATGCGGGAAGAGTTTTCGGGGTAACGCGTTCCTGGTGTACCACAAGCGGACGCACTTCGAGGAGCGCGCGTACAAGTGCGCTCAGTGCCCGAAGGCGTTCCACAACCGCACCAACCTCCAGATGCACGAGAAGACGCACTCTGACGCGAGGCCCTACCCCTGCACGGTGTGCTTTAAGGCGTTCAAGTGCAAGGGGGCGCTGGATCGACACTTCAGGAGCCACACGGGGGTAAAACCGTACGAATGCGAAGTTTGCGGCAAGGCGTTCGGTCAGTCTAACAGCAGGAAGCTCCACGTCAGGACTGTGCATTTGAAGCAACCCGCTCCTTACGTCAGTCGGGCTAGGAAGCGCCGTCCGTTGGACTAG
- Protein Sequence
- MEDVRVCRICLVVGVKMHNLHSYPFNGYFEALVGINPLSMMELPQYGCFECTALVIKLYKFRERCFVAQSELCALLQATGKITIETLSRVNRERLKLTSNLSVQTNNRIYDFIETDTVDVKLETSKVNIPVNYLLEISTIKEEGNNYYDEETNCDDFVVGSVSSDDEPLALRKSQKEKKKSEKRREKKGKKRKDPIEEAVLDYSDELQGTESVTQIALESEELPVMPPKRKRGRPRLTEPKEIEVKQRDRRTKNTGGVVAEDIDLEEYVTIVKLTTEEQLEEINKRQQSSNYLNAPFQCNLCYKGFIDTHAWKHHVGKHDLSAGDVECPICKFRFRSKRALQKHAANHEKKYACKSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDLVEKTEPEGEQEPGPYCQECDVQFVSAEAWKRHMVTSAKHAPANDFKHGCRACGSIFASAEELRLHHRAEHARRRPKNYGKKREGAWPAACEHCNEEIPNAREYWTHFRRVHPDKTYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCAQCPKAFHNRTNLQMHEKTHSDARPYPCTVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRARKRRPLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021592;
- 90% Identity
- iTF_01136080;
- 80% Identity
- -