Pcor012223.2
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421861.1:11383834-11400540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.029 15.5 2.5 1 23 242 264 242 264 0.97 2 11 0.0062 0.4 11.9 9.6 1 23 270 292 270 292 0.95 3 11 3.2e-05 0.0021 19.1 3.6 1 21 298 318 298 319 0.97 4 11 3.1 2e+02 3.4 1.2 8 23 318 333 318 333 0.93 5 11 0.016 1 10.6 8.1 1 23 339 361 339 361 0.98 6 11 1.8e-05 0.0011 19.9 0.6 1 23 367 389 367 389 0.97 7 11 7.4e-06 0.00048 21.1 0.0 1 23 395 417 395 417 0.98 8 11 8.8e-05 0.0057 17.7 0.4 1 23 422 444 422 444 0.96 9 11 2.4e-05 0.0015 19.5 0.4 1 23 577 599 577 599 0.98 10 11 0.002 0.13 13.4 3.3 1 23 664 686 664 686 0.96 11 11 4.6e-05 0.003 18.6 4.3 1 23 696 718 696 718 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCTACGCCGAGCAATGTCTCGGGCTTCGGGTACTCGTGGGGCTTTACGAGCTCGGCGGACCTCACGAAAGGCGAGGTTGAGACTCCAAGCAGTCTCAGCTACACTTTGGGAAACACGGTGTCTCCAGAAACAACATTAACAGTTATGTCTCACAAGACACCACAGGTCCAAGAGAAGGTTGGCACGGTATCTGTGGCTGTCAGCAACACTGGGACGCAGGTCACGCGGGTTGTGACAGCTGGGACTCCAGTGACGGCTAGGAGGGCCATGTTTGTGCTGAATGAAGCCCCGCACACCTTGAATAGGGTGTCGCAGCAGAATCAAACAGCCACTATACAGACCACAAACCTTGCTTCGAAGCCCTTCATGACTCCCATCGGCCCAATCCAACTTACTGCAGAAGAATGTAACGAGATTCTCATGAAGAGAGCTCTGCAAGCTCAGGGCATTGCAACACCAGCAGTCATTGACGCTTCACAGCTCAACCACACCATACTAAATGGAGGTCTCAAAAGCCTGGCTGAGGCAACCACACAGCAAACACAAGTTGAGACTATCCAGACCAATACAGGGCATCAGCATCATCAGCTGATGCATACAAAGCAAGAACCGGGAACTGCTAACAATTCACCAAAAGCGGTGTATTCTCAGACGGAGCTGATGTCGACCAACACGATGTCGgctgcgccgcccgccgccatcAAGGAGCGGCCTTACGCTTGCGAGGAGTGCGGCAAGTCCTTCCTGTTGAAGCACCATCTCACGACGCATGCGAGAGTGCACACGGGTGAGCGACCGCACGCTTGCGTACACTGTGGCAAGACCTTCGCTCACAAACACTGTCTGAACACCCATCTATTACTGCACAGTAACAACCGCCCGTTCCAGTGTCGGGACTGCAAGAAAACCTTCACGCTCAAACACCACCTCATTACGCATATGCggGCGTTCGCGAGGAAGCATTGCCTGAATACACACTTGCTGTTGCATTCTGCTGATCGCCCGTTTAGATGCCATGAGTGCAAAATGGCGTTCACACTGAAGCATCATTTGGTGACGCATTCTAGGTACCACGCAGGCGAGCGGCCCTACGTCTGCGGGGACTGCGGCGAGAGCTTCGCGCAGAAGGAGCACCTGGTGATGCACAGCCGGTTCCACGGGTCGCTGTCCCCGTTCGTGTGCCCCGACTGCGGCGTGGCGTTCGCGCGCAAGTTCCAGCTGGTCAACCACGGCCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCGTCGCGCACATGAAGATCCATACGGGAGAAGGGGTTGTCGCATGTTTAGAATGCGGCGAGGCGTTCAAATGCAAGACGGAGATGCAACAGCACTGCAAGATATCGCGGCACTGCATGAGCGGCAGCGTGACGCAGCAGACGCATCAGCAGCAGgtacaacaacaacaacagcagcAAACTCAACAACAATCACAACAACAAgcgcaacaacaacaacaacagcagcagcagcagcaacagcaacaacaacaacagcagcagcaacaacaacaacagcagcagcagcagcaacaacaacagcaacagcagcaacaacaacaacaaacgaCAGTTATAAAACAAGATGAATTCAAACCGCAAATCGTACATCTCATTGGCGCCGATGGACAGATCGTTACGGAAAAGGTTACGCCTGGATATCCTTGTCCGGAGTGTGGGTCCTGTTTTAACACTAAGGAGGCGCTGTCACTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACCGCGGCGCTGCAGCCCGGCCTCGTCAGCGCCGCGCAGCACCAGGCGCACAatCAACCAATCCAAATTATATCTACGAATCCAAACAACGTGGTACACACGCAAGTAATAGCTactcaaaacCATCACATATCGACGCCGCGGCCGAAGATTCACTTCTGCGTCGACTGCGGAAAGGGATTTGCGGCTAAACACGGCCTATTAGCGCATCACAGAAGACATCCGGATGGCAGTTGTACGCTAAGGACGCACGTTTGCGACCAGTGCGGCAAGGCTTTCTTCCAGAAGAATCATCTCATGCTACATCAGAGACAACATATGGACTTACCGCCTAGAAATCGAGACACGAGCAACAGTGAAAACGGCACGATAATCATGATCGCGGGACACTCAAAGAACTTCCAACAACAGCAGGCGCAACAACAGGCCCAACAACAGGCGCAACAACAAGCGCAACAACAGGCGCAGGCGCAAGCGCAGCAAGCGGCGCAACAGGCCGCGCAACAGGTCGCGCAACAAGTCCAGCAACAGGTCCAGCAACAGGTGCAGCAGCAGATGCAGATCGAGATCGAGCCGCAGGACCACCAGCAGCCTACGCACATACAAGTTGTGACGAATCGCTCCGGCCAGGTGATAGGCAACCAGATAGTagtgggcggcgtgggcgcgcgCCGGCTGGTGGGCTCGCAGCTGCACGTGATCGGGCGCGACGGCAAGCCCATCGGCACGCAGCTGCAGCACAAGCACGCCCGCCACAACACCGCCAGGTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGTQVTRVVTAGTPVTARRAMFVLNEAPHTLNRVSQQNQTATIQTTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPAVIDASQLNHTILNGGLKSLAEATTQQTQVETIQTNTGHQHHQLMHTKQEPGTANNSPKAVYSQTELMSTNTMSAAPPAAIKERPYACEECGKSFLLKHHLTTHARVHTGERPHACVHCGKTFAHKHCLNTHLLLHSNNRPFQCRDCKKTFTLKHHLITHMRAFARKHCLNTHLLLHSADRPFRCHECKMAFTLKHHLVTHSRYHAGERPYVCGDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKTEMQQHCKISRHCMSGSVTQQTHQQQVQQQQQQQTQQQSQQQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDEFKPQIVHLIGADGQIVTEKVTPGYPCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVSAAQHQAHNQPIQIISTNPNNVVHTQVIATQNHHISTPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNRDTSNSENGTIIMIAGHSKNFQQQQAQQQAQQQAQQQAQQQAQAQAQQAAQQAAQQVAQQVQQQVQQQVQQQMQIEIEPQDHQQPTHIQVVTNRSGQVIGNQIVVGGVGARRLVGSQLHVIGRDGKPIGTQLQHKHARHNTAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289940;
- 90% Identity
- iTF_00156522;
- 80% Identity
- -