Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421861.1:11540553-11560049[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.21 13 7.1 0.2 3 21 186 204 184 205 0.90

2 11 0.011 0.74 11.0 0.4 1 23 244 266 244 266 0.95

3 11 0.00058 0.038 15.1 5.4 1 23 272 294 272 294 0.98

4 11 2.4e-05 0.0015 19.5 0.6 1 23 299 321 299 321 0.98

5 11 0.0003 0.019 16.0 0.2 1 23 327 350 327 350 0.89

6 11 0.0001 0.0068 17.4 3.1 2 23 358 380 357 380 0.95

7 11 2.1 1.3e+02 3.9 0.5 3 21 648 666 646 667 0.90

8 11 0.00096 0.062 14.4 0.2 1 23 705 727 705 727 0.97

9 11 0.00011 0.0069 17.4 0.5 1 23 733 756 733 756 0.98

10 11 8e-07 5.2e-05 24.1 0.2 1 23 761 783 761 783 0.99

11 11 7.9e-05 0.0051 17.8 1.6 1 23 791 814 791 814 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.21	13	7.1	0.2	3	21	186	204	184	205	0.90
2	11	0.011	0.74	11.0	0.4	1	23	244	266	244	266	0.95
3	11	0.00058	0.038	15.1	5.4	1	23	272	294	272	294	0.98
4	11	2.4e-05	0.0015	19.5	0.6	1	23	299	321	299	321	0.98
5	11	0.0003	0.019	16.0	0.2	1	23	327	350	327	350	0.89
6	11	0.0001	0.0068	17.4	3.1	2	23	358	380	357	380	0.95
7	11	2.1	1.3e+02	3.9	0.5	3	21	648	666	646	667	0.90
8	11	0.00096	0.062	14.4	0.2	1	23	705	727	705	727	0.97
9	11	0.00011	0.0069	17.4	0.5	1	23	733	756	733	756	0.98
10	11	8e-07	5.2e-05	24.1	0.2	1	23	761	783	761	783	0.99
11	11	7.9e-05	0.0051	17.8	1.6	1	23	791	814	791	814	0.96

Sequence Information

Coding Sequence: ATGGAACAGGACGACGAAATGATTGTTATAATCGTCGAGGACGAGAGTGATAACGAGAAAAGTTCTTATTTCCCTCAATGTTTTCctccaataaaaattaaagaggAGGTTTTGGATGAAACTGATGGAACAAGTACACAAAATCCTGAAAGCACTGTTATTATTAAAGAAGAGATATTAGATGAAACAGAAGAGTACTTGGAGACAGAGTTCAATGATATTATTCCTAATTACGAAGTAAAAAAGGAAGACGAGGATTATGTTCCTACAGAATTTGAAGAAGATAAAAGGAGGTATAAGTTATTGCGTCCTTGCCAGAGGAGGTCATTTGTGAGGGAACTCCGGGAGCAGTATCCGGAGTTGGCTAGAGACAAAGACTTGCTTGTCTGTTCACTTGCAGAGATAATGAGGAGTGTCAAACCTCCACCACTGCCACTAGACTATTATGTTATGAATGGCATTATGTTTgaATGCATAGTGTGCACAGCCTTTTCTGAGACGATTCCCGCTGCAGGCCGTCACTACCAGGAGAAACACGGGCCAAGATATCTCATTTGTTTTGCTTGTGGTGTTGATTTTAGGAGCACAACGAACTTGTATAAACACGAGAAGCGCTGCACCGGGGCTGATGCGGAAGTGGTGCTCCGTGCGCGAGCCATCTCGGTCGGCAACAAGGGCCGGCAACGTCCCTACTTGAAGCAAGCTAAGAAATTCCGACCACTCAATAAGTTCTGCTGTGACAACTGCCCGGCCGAGTTCAACTCGCGCGCGGCGCTGGTGTCCCACCTGTACCTGCACAACGGGCTGCGACCCTTCCGCTGCAAGCACTGCGCATGCGCGTACACCTCGCAGTCTGCGCTCACGcgtCACCTGAAACAGCACAGCGACGTGAAATACGTCTGCGATCACTGCGACCGCGCGTTTAAAGTGAAGACTGCGCTGGTGTCTCACCTCGACACGCATTTACCGTTTAGAAAGCATGTGTGCGTCGAGTGCGGGCGCCGCTTTGCCCAGAAAAGCGCCCTGCTGCTGCACGTGGACGGCAAGCACCGCCATCTGCCGCCGCCCTGCGCCTGCCAGCTGTGCCCCAAGAGGTTTAGAAGAATGACATTATTAAAAGAGCATATGAGGAAAGATCATGGGATGCTGCTGATGACTCGAAAGATGTTCTTCAAAAAGCTGCCAACGATGACGGACACGCAGATCCAGTACGCGAAAGCTATATTGAAGACCGACGAGGCGTTTTCGGAGTCGCAACACGTATTCCCACAGTGCCAAATCTGGATTCAAGTTTTAATATCCATAACATTTCTTTCAAATCATGTTTCAGCGCTAGACAACAACTTGCCTGATATAATGGAACTGGAAGCAgacattttaaaaatggaaCATGATGATGATACAATAATTCTAATAGTTGGGGATGAGGGACCTGAGAGCTTTAAGATTAAAGACGAAATAGAGGATGAGATTGATGATACTTTAGTCTCACCAGTTTCTCCGGACGAGATGGTGATCATAAAAGAAGAAATATTAGATGTCACATTTGAATATCCGAATTCTGATTGTGATCAAGAATTAATGCCTGTTAAAACGGAAGAGgttgataataaaaataatgaaaatataagcaGTTATGTGGCTATTAGTAAAGAATGGGAAGAGAAGACAAGCTCATCAACCTATAAGCCAGGAAAGAGGAAGTCGCTTGTAAAGGAGCTTAAACAGAAACATCCGGAGTTGGCTAAAGCTAAAAATCAGACCAAACTAATTACCGCACTTCTCGAGATTATGAGGAGTGTCAAACCACCACCGCTGCCACAGGACTACTATGTTATGAATGGCATTATGTTAGAATGTGTAATATGCTCGGCCCTGTCCGAGACGATCCCCGCGGCCAGCCGACATTACTTGGAGAAACACGGATCCAGATACCTCTTTTGCTATGCGTGTGGTGCACATTACAGGAGccGTACGACGCTATACGTGCACGAGAAGCGTTGCTCGGCGCCGGACCGGAACGTTGTGCTGCGAGCACGCGCCGTCTGGCTCGGCAATAAGGGCAAGACTCGGCCCTTCCTTGGCCTCGCCAAGAAATTCCCCGCCAGTAAGTTCGAGTGCTCTTTGTGCCCGGCCGTGTTCTACGGCAAGGAGGCGCTGAAGGCGCACATACACCTGCACCAGGGACTGCGGCCCTTCAAATGCAAGGAGTGCGATAGCGCGTACACTTCGCGGGGGGCGCTGGCGCGGCACGTGAAGAGGCAGCACAGCGACGAGCAGTTCCAGTGCGACGACTGCGGCCGCGTGTTCAAGGTCAAGGAGGGACTGGTCACCCACATGGAGACGCATCGACCTCGCGACCTTCGCAAGTATCCCTGCGTGGAGTGCGGGCGTCGTTTCGCTCAGAAGCACACGATGCAGCGGCATGTCGAACGGAAGCATTTGAAGGCGCCGCCGCAGTACGCCTGCCAGCTGTGCCCGGAGAGGTGA
Protein Sequence: MEQDDEMIVIIVEDESDNEKSSYFPQCFPPIKIKEEVLDETDGTSTQNPESTVIIKEEILDETEEYLETEFNDIIPNYEVKKEDEDYVPTEFEEDKRRYKLLRPCQRRSFVRELREQYPELARDKDLLVCSLAEIMRSVKPPPLPLDYYVMNGIMFECIVCTAFSETIPAAGRHYQEKHGPRYLICFACGVDFRSTTNLYKHEKRCTGADAEVVLRARAISVGNKGRQRPYLKQAKKFRPLNKFCCDNCPAEFNSRAALVSHLYLHNGLRPFRCKHCACAYTSQSALTRHLKQHSDVKYVCDHCDRAFKVKTALVSHLDTHLPFRKHVCVECGRRFAQKSALLLHVDGKHRHLPPPCACQLCPKRFRRMTLLKEHMRKDHGMLLMTRKMFFKKLPTMTDTQIQYAKAILKTDEAFSESQHVFPQCQIWIQVLISITFLSNHVSALDNNLPDIMELEADILKMEHDDDTIILIVGDEGPESFKIKDEIEDEIDDTLVSPVSPDEMVIIKEEILDVTFEYPNSDCDQELMPVKTEEVDNKNNENISSYVAISKEWEEKTSSSTYKPGKRKSLVKELKQKHPELAKAKNQTKLITALLEIMRSVKPPPLPQDYYVMNGIMLECVICSALSETIPAASRHYLEKHGSRYLFCYACGAHYRSRTTLYVHEKRCSAPDRNVVLRARAVWLGNKGKTRPFLGLAKKFPASKFECSLCPAVFYGKEALKAHIHLHQGLRPFKCKECDSAYTSRGALARHVKRQHSDEQFQCDDCGRVFKVKEGLVTHMETHRPRDLRKYPCVECGRRFAQKHTMQRHVERKHLKAPPQYACQLCPER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -