Pcor022982.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:3043983-3046543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0089 0.58 11.4 0.8 3 23 29 50 27 50 0.90 2 20 0.0064 0.42 11.8 2.3 2 23 74 96 73 96 0.95 3 20 0.017 1.1 10.5 0.7 2 23 119 140 118 140 0.96 4 20 0.00036 0.023 15.8 0.3 1 23 144 166 144 166 0.98 5 20 8.4 5.5e+02 2.0 4.5 1 11 171 181 171 194 0.73 6 20 0.27 18 6.7 0.2 2 21 202 221 201 224 0.86 7 20 0.00011 0.0072 17.4 1.4 2 23 232 254 231 254 0.96 8 20 0.0043 0.28 12.4 0.7 1 23 260 282 260 282 0.97 9 20 0.15 10 7.5 4.1 1 23 288 310 288 310 0.98 10 20 1.2 75 4.7 0.2 1 13 316 328 316 330 0.88 11 20 0.053 3.4 8.9 0.6 3 23 419 440 417 440 0.92 12 20 0.016 1 10.6 0.6 2 23 467 489 466 489 0.94 13 20 3.3 2.2e+02 3.3 0.1 2 23 512 533 511 533 0.93 14 20 0.0016 0.1 13.7 0.2 1 23 537 559 537 559 0.97 15 20 0.033 2.1 9.6 0.4 1 19 564 582 564 582 0.95 16 20 2.4 1.5e+02 3.7 1.7 2 23 595 617 594 617 0.80 17 20 0.00048 0.031 15.4 1.3 2 23 625 647 625 647 0.97 18 20 0.00074 0.048 14.8 4.0 1 23 653 675 653 675 0.98 19 20 2.5e-06 0.00016 22.5 2.7 1 23 681 703 681 703 0.98 20 20 0.0027 0.18 13.0 6.8 1 23 709 732 709 732 0.97
Sequence Information
- Coding Sequence
- ATGAAACACCAGGAGAACCTCAAAAGTATATTGATTTACTCCAACGCGAGCATTATAAGGGGTAAAGATAATGAGGGGTACGGATGCAACTTCTGTTCGAAGCGGTATCCAAAGCCTAGTGAGCTGAAATCGCACTTCCTAGATCAACATTCCAATATAAATGCGCTTCGTTTACCCAAGCTGTTCGAGTACTCTTTGAAACTGGACATAACTGATCTAAAATGCAATTTATGCCTCAAAAATTACAGCAAGCTTGACGATTTCACACATCATCTTCGCGAAGACCACGAAAAAAACCTTTTCACGGATATCAATGGCCAAATAATTCCGTTTAAATTTGACTCTACGGCACTTCGTTGCGCGATATGTGAAACAGAGTTCACAAACTTCAAAGTTCTGTTAGAACACATGCATGTGCATTTCAGGAATTTCGTCTGTGAAGTTTGCAACGCTGGTTTCGTCACGAGAAGACTACTAGTCAGTCATAAGCGGAGGCACGGTAATGGCAACTTCAAATGCGCACATTGCGTCAAAACGTTTACCTGCGAACAAAAAAAGCGAGACCACGAGCAGAGGATTCATCTTGGCTTGAAGAAAAGGAACAAATGCAAATTCTGTGACGAGAAATTTGCTGATTATTGGTCCAAAATTGATCATTTGGTAGAAGCACACGGCGTGCCCAGAGTCGTTTTGAAATGTCAAGCGTGTGAGCGGACATTCAAGAACCAACGGGCTTTGACGCGACATGTGAAGAAAGACCACCTGATGGAGAGGAGACACGTTTGTGGCATATGTAACATGGAGTTTTATCTGAAAAATCGTTTAGAAGACCACATGATCACCCACACAGGGATCAAGAAATTCCAGTGCCATGTGTGTGCGCGCTGGTACAATGCGAATAAGTCTTTGCGGCATCACTTGAGGTCCCATGCTGATGACAGACAGTTCTTTTGCGATGTGTGTGACCAGGCTTTCGTTCAAGAGAGCGTTGCACAGCAAACACCAATTGTTAAAATAGAGTCATTCGACTCGTCATCCGATGATGAAGTAGAAGCTACATCCGCGACAACCCCCGTCGATCCTTTAAGTGGCGCCCAAATAATACCAAAGGTTGCTCAAAAATggcagaagaagaagaaatcagACGGCAGGAAAACTTCAGCGGAAATGACTAAACATcttcaaaattttgaaattattatgcTTTGCTCCAATGCGACGCCGACGCGAGGACACCAAGGCATCGGCTACGGTTGCTTCTTCTGCGAAGTACAGTTCCCCGACCCGGCCAACCTCAAGTCCCACACTCTGGAGTGTCACGCTGACTTCCAGCACACTTCATCCACGCGACCGCCGCAACTTAACAACTATTCCGTCAAACTCGATATCACATCCCTAACATGCAAGATTTGCAACGAAAAATTCGAGCAGCTAGTACCGTTCATGGACCATCTCCGCTTTAAACATTACAAACCGATCCATACCGATATCAAAAGCTATATATTACCGTTTCGATTTGATAATAACCCGCTTAAATGCGTTATGTGCGAGACAGAGTTCAACGCATTCAGAATGGCCGTGGAGCATATGAATATACACCTCAGGAATCATATCTGCGACGTATGTGACGCTGGTTTCGTCAACAGAGCCGGCTGGCGAACTCACAGACGCATTCACCAGTACGGTGATTTCCCTTGCAAGAAATGCCCTCAAGTCTTCAACTCTATGGTTAAATTGAGGTATCACGACCGCTGTGTCCACTTAGGGCAAGACAAGAGGAATAAGTGCGCCTACTGCGGTGAAAAGTTTAACTGTTTGGTTATGAAGAACAACCATATGGTGAAGGAGCATGGCGTTGCTCCCACGGTAGCGCAATGTAAAGCTTGTGAGAAATCATTCAGCAGCTACCAAAGTCTACGGGTACACGAGAAAACGTATCATCTGTTGGAGAAGAGGTTTAAATGCACGTTGTGTGAGATGGAGTTCCACTCTAACAAGTATCTGCAGAGGCATATGGTGAAGCACACAGGGGCCCGAGATTTTAAATGCGATGTCTGCCACAAGGCGTACGGCAGGAAGAGTACTCTGAAGGAACATATGCGTCTCCATGCAGACGATCGCAGGTTTAAGTGTGAACACTGTCCAATGGCGTTCATACAAAAATGCAGCTTGAAATCCCATTTGCATTCCAAACATGGAAAGGAATTGACCAAGTGA
- Protein Sequence
- MKHQENLKSILIYSNASIIRGKDNEGYGCNFCSKRYPKPSELKSHFLDQHSNINALRLPKLFEYSLKLDITDLKCNLCLKNYSKLDDFTHHLREDHEKNLFTDINGQIIPFKFDSTALRCAICETEFTNFKVLLEHMHVHFRNFVCEVCNAGFVTRRLLVSHKRRHGNGNFKCAHCVKTFTCEQKKRDHEQRIHLGLKKRNKCKFCDEKFADYWSKIDHLVEAHGVPRVVLKCQACERTFKNQRALTRHVKKDHLMERRHVCGICNMEFYLKNRLEDHMITHTGIKKFQCHVCARWYNANKSLRHHLRSHADDRQFFCDVCDQAFVQESVAQQTPIVKIESFDSSSDDEVEATSATTPVDPLSGAQIIPKVAQKWQKKKKSDGRKTSAEMTKHLQNFEIIMLCSNATPTRGHQGIGYGCFFCEVQFPDPANLKSHTLECHADFQHTSSTRPPQLNNYSVKLDITSLTCKICNEKFEQLVPFMDHLRFKHYKPIHTDIKSYILPFRFDNNPLKCVMCETEFNAFRMAVEHMNIHLRNHICDVCDAGFVNRAGWRTHRRIHQYGDFPCKKCPQVFNSMVKLRYHDRCVHLGQDKRNKCAYCGEKFNCLVMKNNHMVKEHGVAPTVAQCKACEKSFSSYQSLRVHEKTYHLLEKRFKCTLCEMEFHSNKYLQRHMVKHTGARDFKCDVCHKAYGRKSTLKEHMRLHADDRRFKCEHCPMAFIQKCSLKSHLHSKHGKELTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01136033;
- 90% Identity
- iTF_01136033;
- 80% Identity
- -