Basic Information

Insect: Pandemis corylana
Gene Symbol: su(Hw)
Assembly: GCA_949127965.1
Location: OX421868.1:4798162-4804902[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.1 13.7 0.3 2 21 25 44 25 45 0.95

2 13 0.00021 0.013 16.5 1.6 1 23 64 87 64 87 0.97

3 13 5.2 3.4e+02 2.7 0.5 2 23 95 117 94 117 0.90

4 13 0.00046 0.03 15.4 0.9 1 20 122 141 122 143 0.95

5 13 4.9e-07 3.2e-05 24.8 0.1 1 23 154 177 154 177 0.96

6 13 0.046 3 9.1 5.5 1 23 183 206 183 206 0.97

7 13 0.00095 0.062 14.4 1.8 1 23 213 235 213 235 0.98

8 13 0.015 0.97 10.7 0.1 1 23 240 262 240 262 0.98

9 13 8e-06 0.00052 21.0 0.5 1 23 268 290 268 290 0.98

10 13 5.2e-05 0.0034 18.4 0.3 2 23 294 315 294 315 0.97

11 13 0.087 5.6 8.3 0.1 8 23 333 348 323 348 0.82

12 13 0.0022 0.14 13.3 2.3 1 23 354 376 354 376 0.98

13 13 4.8 3.1e+02 2.8 0.7 3 23 384 407 383 407 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.1	13.7	0.3	2	21	25	44	25	45	0.95
2	13	0.00021	0.013	16.5	1.6	1	23	64	87	64	87	0.97
3	13	5.2	3.4e+02	2.7	0.5	2	23	95	117	94	117	0.90
4	13	0.00046	0.03	15.4	0.9	1	20	122	141	122	143	0.95
5	13	4.9e-07	3.2e-05	24.8	0.1	1	23	154	177	154	177	0.96
6	13	0.046	3	9.1	5.5	1	23	183	206	183	206	0.97
7	13	0.00095	0.062	14.4	1.8	1	23	213	235	213	235	0.98
8	13	0.015	0.97	10.7	0.1	1	23	240	262	240	262	0.98
9	13	8e-06	0.00052	21.0	0.5	1	23	268	290	268	290	0.98
10	13	5.2e-05	0.0034	18.4	0.3	2	23	294	315	294	315	0.97
11	13	0.087	5.6	8.3	0.1	8	23	333	348	323	348	0.82
12	13	0.0022	0.14	13.3	2.3	1	23	354	376	354	376	0.98
13	13	4.8	3.1e+02	2.8	0.7	3	23	384	407	383	407	0.82

Sequence Information

Coding Sequence: ATGCCACCTAAACGTAAAAGATTAGGACGGCCTCCGGGCtctaagaaaaagaaaaatcccAAAGTAAAGAATGAATGCAACTTCTGCGGTGGAACTTTCAAGAACAAAACTTATTTAGGTAAACACTTACGTGCTTGTGCTGAAAAAAAGGCTCTTAAACTGCTGGATGTTTCGGccaaaaagGCTGCATTTAGTTGCGCGGAGTGCAGTAAAAAGTTCAGATTTGTGGAAAGTTACACCAAGCATATGAACATGGATCACTGTAAGCTCCCTGGGGCGGTTTCTTGCGCCCAGTGTTCTGTGCGTTGCCCTGACCAGAAAATCCTGAAACAGCATATTTCTGATGTGCATGAACGGGAAATATTTGAGTGTGAACACTGCAAGAGGCAGTTTGTTAGAAGAGCCCATGTGCTACGTCACATAGCACAGAAGGGATGTGATGGGACACTTGTTAACATGTTCCCATGCGAAATTTGTGATGCCACCTTCACCCGTAAAGATAATTTGATAGTGCATCTACGTCTGCAGCATATCAATCTGAATCATTTCCGGTGCAAACATTGTGATTACCATACTGGGAATTTTTCCAAGTTGATTATTCATACACAGAAGTTGCACTCAGAAAACCCTAATCAGTTTGAATGTCACCACTGCAGCAAAATCACCAGCTCACGCGCAGCTATGGCAAAGCATTTGGAGATACATGGCGACAAAAAATACGAATGTGATGtgTGTGGCTACAGCACATACACGATCGAGGTGATCCGTCGCCACGTGCTGACCCACGTCGAGGAGAAGCCTTACAAGTGCTCCATCTGCGGCAACTCCTACATCCAGCGCGCGCAGCTACAGCGCCACCTGGTCCGGCACACGGGCAACGTGTGCAGCAAGTGTGGCAGCTCCTTTAAGTCTAAGGCCGGTTTGATAATTCACCAGCGCGAGCATATGGGTCTGGGCAAGTTGCTGTGTCCGTACGAGACGTGCCCGCTCGCCAAGAAGGAGTTCAGCAATGAAGCTAGCCTCACCAACCACGTCAAGAGTCATCTGGACGACAGACCCTACGAATGCGCCGTGTGCAAGAAGCGGTTCCACAGCGACATCAACATGCGGCGGCACGTGTCGACGCACCAGCTGGACCGTCCGCGGCGCTGCATGTACTGCGTGACGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCGTCAAGCACGTGCGCAAGTGCCACCCCGACCTGTTCCGCGGGCACTTGCAGCACGTCAGGCAGGTGCTGGGCACCAACGTCAATATCGACCGCGTGAAGAAGTCGGAAATGGAGTCGATCCTCGACGTGCTGGACGCGGAGTCGGAGCGCATACTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAAGACGCTGACCCCGCCGCCGACCAGCCCGAACTGCCCCTCAAGAGTGAGAGCAGCACCTTGATGTCCGAAGAGGCCCTCGCCGAAAGTCTCAAAACGTTGCTGACGCAGCTCATTGACGTGGAGAAGCTGGAGTGTTTCGGTTGGCCCGACGAAAGCGTCGATGTGGTACTAGAGAAGGTGATAGAGCAatgtggcgcgcgcgctgccgaCCGCGAGCGATGGACGCGCGTGCAGCGCCTGCGCGAGAACACCAAACAGCTGTTCCTGTACGTCATCGAGGACGCCAACATCGCGCGCATGCTGGACACGCACACCATCGACCAGATCGTCCAGCACATACTGAGGCAGGTCGCCGACACCGGAGCGGCTGAGGTGTGA
Protein Sequence: MPPKRKRLGRPPGSKKKKNPKVKNECNFCGGTFKNKTYLGKHLRACAEKKALKLLDVSAKKAAFSCAECSKKFRFVESYTKHMNMDHCKLPGAVSCAQCSVRCPDQKILKQHISDVHEREIFECEHCKRQFVRRAHVLRHIAQKGCDGTLVNMFPCEICDATFTRKDNLIVHLRLQHINLNHFRCKHCDYHTGNFSKLIIHTQKLHSENPNQFECHHCSKITSSRAAMAKHLEIHGDKKYECDVCGYSTYTIEVIRRHVLTHVEEKPYKCSICGNSYIQRAQLQRHLVRHTGNVCSKCGSSFKSKAGLIIHQREHMGLGKLLCPYETCPLAKKEFSNEASLTNHVKSHLDDRPYECAVCKKRFHSDINMRRHVSTHQLDRPRRCMYCVTARAYVRGEQLVKHVRKCHPDLFRGHLQHVRQVLGTNVNIDRVKKSEMESILDVLDAESERILQGYGEGVLYGGVQDADPAADQPELPLKSESSTLMSEEALAESLKTLLTQLIDVEKLECFGWPDESVDVVLEKVIEQCGARAADRERWTRVQRLRENTKQLFLYVIEDANIARMLDTHTIDQIVQHILRQVADTGAAEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00462647;
90% Identity: iTF_01136050;
80% Identity: -