Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421850.1:17677890-17694629[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0056 0.36 12.0 1.1 1 23 202 224 202 224 0.98

2 27 0.00091 0.059 14.5 0.8 2 20 257 275 256 277 0.93

3 27 6.3e-05 0.0041 18.1 0.5 2 23 311 333 310 333 0.96

4 27 8.2e-05 0.0053 17.8 0.4 1 23 384 407 384 407 0.95

5 27 0.096 6.2 8.1 0.1 1 23 433 455 433 455 0.96

6 27 0.00044 0.028 15.5 2.2 2 23 494 515 493 515 0.96

7 27 0.00089 0.058 14.5 3.7 2 23 555 577 555 577 0.97

8 27 0.0049 0.32 12.2 0.2 1 23 627 650 627 650 0.95

9 27 0.0023 0.15 13.2 0.2 1 23 706 728 706 728 0.97

10 27 0.019 1.3 10.3 5.2 2 23 740 761 739 761 0.96

11 27 0.048 3.1 9.1 1.8 2 23 773 794 772 794 0.96

12 27 0.0044 0.28 12.3 1.0 1 23 804 826 804 826 0.98

13 27 0.014 0.92 10.7 7.1 1 23 854 876 854 876 0.96

14 27 0.0014 0.092 13.9 2.6 1 23 887 909 887 909 0.98

15 27 0.00054 0.035 15.2 0.7 1 23 917 939 917 939 0.97

16 27 0.00075 0.049 14.7 0.1 2 23 959 981 958 981 0.97

17 27 0.048 3.1 9.1 1.0 1 23 999 1021 999 1021 0.93

18 27 0.28 18 6.7 3.7 1 23 1028 1050 1028 1050 0.96

19 27 0.18 12 7.3 0.4 2 23 1061 1083 1060 1083 0.95

20 27 0.0042 0.27 12.4 0.3 1 23 1105 1127 1105 1127 0.97

21 27 0.0072 0.46 11.7 0.2 2 23 1208 1229 1207 1229 0.95

22 27 3.9 2.5e+02 3.1 5.5 5 23 1239 1257 1237 1257 0.94

23 27 0.018 1.2 10.4 0.8 2 23 1268 1290 1267 1290 0.95

24 27 0.22 14 7.0 2.2 2 23 1307 1325 1307 1325 0.89

25 27 0.14 9.1 7.6 1.8 2 21 1329 1348 1329 1349 0.94

26 27 1.4 93 4.4 2.6 2 23 1397 1418 1396 1418 0.93

27 27 0.0021 0.14 13.3 0.6 2 23 1429 1451 1428 1451 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0056	0.36	12.0	1.1	1	23	202	224	202	224	0.98
2	27	0.00091	0.059	14.5	0.8	2	20	257	275	256	277	0.93
3	27	6.3e-05	0.0041	18.1	0.5	2	23	311	333	310	333	0.96
4	27	8.2e-05	0.0053	17.8	0.4	1	23	384	407	384	407	0.95
5	27	0.096	6.2	8.1	0.1	1	23	433	455	433	455	0.96
6	27	0.00044	0.028	15.5	2.2	2	23	494	515	493	515	0.96
7	27	0.00089	0.058	14.5	3.7	2	23	555	577	555	577	0.97
8	27	0.0049	0.32	12.2	0.2	1	23	627	650	627	650	0.95
9	27	0.0023	0.15	13.2	0.2	1	23	706	728	706	728	0.97
10	27	0.019	1.3	10.3	5.2	2	23	740	761	739	761	0.96
11	27	0.048	3.1	9.1	1.8	2	23	773	794	772	794	0.96
12	27	0.0044	0.28	12.3	1.0	1	23	804	826	804	826	0.98
13	27	0.014	0.92	10.7	7.1	1	23	854	876	854	876	0.96
14	27	0.0014	0.092	13.9	2.6	1	23	887	909	887	909	0.98
15	27	0.00054	0.035	15.2	0.7	1	23	917	939	917	939	0.97
16	27	0.00075	0.049	14.7	0.1	2	23	959	981	958	981	0.97
17	27	0.048	3.1	9.1	1.0	1	23	999	1021	999	1021	0.93
18	27	0.28	18	6.7	3.7	1	23	1028	1050	1028	1050	0.96
19	27	0.18	12	7.3	0.4	2	23	1061	1083	1060	1083	0.95
20	27	0.0042	0.27	12.4	0.3	1	23	1105	1127	1105	1127	0.97
21	27	0.0072	0.46	11.7	0.2	2	23	1208	1229	1207	1229	0.95
22	27	3.9	2.5e+02	3.1	5.5	5	23	1239	1257	1237	1257	0.94
23	27	0.018	1.2	10.4	0.8	2	23	1268	1290	1267	1290	0.95
24	27	0.22	14	7.0	2.2	2	23	1307	1325	1307	1325	0.89
25	27	0.14	9.1	7.6	1.8	2	21	1329	1348	1329	1349	0.94
26	27	1.4	93	4.4	2.6	2	23	1397	1418	1396	1418	0.93
27	27	0.0021	0.14	13.3	0.6	2	23	1429	1451	1428	1451	0.95

Sequence Information

Coding Sequence: ATGGCTCTCAATCTCAAACTTGGAAAATGTAGACTTTGTCTTAAGCTCGGCGACTTCTACTCCATCTTCACAGTGGACAACAACGTCCAGCTGGCGGAGATGGCAATGGACTGCGCTCgtattaaaGTATACGAAGGCGATGGACTGCCAGATAAGGTCTGTGCTGAGTGCATTCAGAAGCTCAGCAGTGCACATATTTTCAAACAGCAATGTGAAAGAGCTGATCAAGAATTGCGAAGGAACAATGTACCACCACCAGGATTCAGCGTCAGCCCGCCGCCTCCAAATAGGCAAAGCTGTGATTCTGCTTTATCCATCCAAACTGATACTTCCAATCAAACTAAACCATCCTTCAATTCTGAAGCAGATCCTGCCAAGAGAAAAAGCCGCAAACGTAGCCACGAAAGTATAGAAGATGTCTCTATAAGTAGTAAATCACACGATTTTCGCCCGACAAGTTCAAAACGAGTAGAAGAACTTCGAAACAGTCACAAAAAGCCCAAGAAATCTGGCAATTACTATGAAGACTCAGATTACGAGGATCACAGTGCTTCTCATTTCTCTGCTGAGACCGATTCTGACGAGCCACTTTTGAAAGACAAATTTAGGTGTAAAGTTTGTGCCAAGCAGTTTCAATCACTAAAGAGCTTAGCATCTCATTCGAGAGTTCATTCACGCAATAAGACTAAAGATGTTTTTCCGGAAAATGTGGTAGTTAATATTCCAAAGACAAATTTGCAAGATGCTTCAGATGTCGAGGACCAGCTTAGCTGCGAGAAATGCGGAAAatcttttaaattgaaaattatgctCAATCGTCATCATGATTTGTGTGGCAAATCATCTGAAAAGTCACCCACAAAACCAATCCAAAAGGAGTTACTCATTTCGTTAGAACCGATTGACGGCAtacatagtaataaaaaaattgagtgTCAAATGTGTACAACAAAATTCAAGACTGttgaaaatttagaaaaacataTGAAAGTTGTTCATGCTGCTGTGCTTCAAAAAGTCCAATCGGAAACAAAAGCAGATAACGGCAAAGTGTCTGTACCTTGTATATACTGTAAGAAGCCGTTCGACGATTATTATGTTCACAGTGAGCATTTCAGCAAATGTCCTCAAAATACTAACGCTTCCACATTTGAGTGTCCCGTATGTAAAAAAGTTACGACAAGAAAGGCCGCATACTTTCGTCACATCAAGGACGTGCACTTTGAGCCTCGTATGATGACGCTGAAGccggaggcggcggcggaggcgccggcagcagcggcgcggcaGGCCTTCTTCGAGTGCCGCATGTGCAGCAAGCGGCTGGCGTCCGAGCAGCTTCTTATCACGCATCTCGCTGCCCACGTCTCCAATATCGACGGCGGCGGCGACAACGACGGCGCCGACGACGAGTCCAGACAGAGTACTATCGAAGATTCGTCATCGATGCTCTCCGATAACAGCGGCAATGGCCCCCTGCAGTGTAACTACTGCGAAAAGAGATTTAAGTATCGAAAGTCTTTAGTTAGTCATGAATTAAAACATTCCCAAGTAGAAGTGAAAACGGAAGACGAGGTTATGCCTTCAAGCAGCGCTGCAGGAGCGGAGGCATACCGCGAGGAGTCCGCATCCAGCGGCAGTGGTGAGGAGGGCGACGACAACACTTGCGATATCTGCGAGAAGCAGTTCTCCTACAAGCGGCTGCTCGCGCACCACAAACGCACCAAGCATAATATGAGCTCTGGTACTAAAAGAGCTCCCATCATTCTCAAGGATTGTCTCGTGCGTTGTCTCATATGCGATATCGATATGAAAGTGAGTGAGGTGAATGAGCATAATCAAAAACATATTAAAGCTAATATGAAACCGCGTAATTTGTATACATGCATTGATTGTGGAGAGAAATTTAAAAGCCGTACGGTGCTGGCAAACCATATCAAACTAGTACACAGGCTCAAGCAGTTGCCGCCTAAACAATTTGAAGGCGCAGATTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAGCCCCTGGACGAGATCCAGACTCACAACGGCTTTGGTGAGGTTCCGTGCGAGCAAGAATACTCTCCGTCTGTAAATCTTAGCGGCTTTACATGCACCATATGTGGCAAGAATATGCCCACTCTAATTTCACTTAAACGACATGTAAACTGGCATTCAAATGTTGGAAATCAATTAGAAAAAAAGATTGAATGCTTTGTTTGTACAGAGACATTCCGGTTTCAATGTCACTACAAGTTGCACATGCGCGAACATTACCAAGATACTAACCTTGACCCCAAATTTCTCACCTGCACCATCTGCAATCGAAAAAGCAAACACTTGAGGGCAGCTCAAGCTCACATGAATTACCACAAACAGACGCGGTTTCAGAATAAAGACTATCAGTGTTCCATTTGTAAACGCGTCTTCCAATATCGTAAGGTTTACCTGTCGCACATGGCGATACACTACAAGCGTGGCGAGAGTCAGAACACTATAGTTGGGGACGCGCTGCCTAACACCGTAGATAAATCCGTTTATGATGGGACGCATTCGTGCCTTCACTGCGGAAAGGTTTGCGACTCAGAGAATTCACTAAAACATCATATGTCTTGGCACAATTCGAAAACTTTGTTGTTCGGTGCGCGACACGAGTGTCCGATTTGTAATATCacgtttactaataaaaaaagacaagagtTACATACAAGAACTCATTACGAAGACGAAAATGGTCCTTTCAAATGCACAATATGCGGAAAGGGATATAACGACGAGATTTTTTTCCGAAGGCACGTCAAAGGGCATAACTTTGATCACCAATCTCACAAGAAAAGAATAGAAAAGCTGAGAAAAGATAAAGTGAAATGTCCTATATGCGTGCGCTACTACCCGGATTGGGTAAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAAATGATAAAGCAAGACCCggaggcgccgccgccgcgcaccttCGCATGCAAGCTGTGCGCGCGCGTGTTCCGGGACGAGCGCCGCCTGCGCCACCACGAGGAGGCCCATCTGCGCAAACCAGAGTTCTTCAAATGTAAGTTCTGCGGCAAGAAAACTATCTCACTCAAGAACCACAACTTGCACATCAAGGGCCATCTCACCACCAAACATATCGACAATCCTCTCAAGTGCCCTCAGTGCGAGGAGCTATTCGTTAAGGGATACGATTTGCATTACCACTTACGGGATGTGCACGACATCAACGAGACGTGGATTGCGGATCGAACTGAACAAACATTGAATGGCCCATTGAAAGAGTTTCAATGCTCGATTTGTCTCAAAATACTTGCAAGTAAAGGAAACTACGAGAGACACTTGGACTACCACAATTCTCTAAGATGCAACTACTGCTATGATTATTTTAGTTCTCTGAGGTTCCTGGAAGGACATCTGACTTTCAGTTGTGACAAAAAAAAGTTGGTCGGCGATACCGAAATATATCCACGAAAGATTAAATGCCACGTTTGTTACAAGGCATTCCATCTGCAAGTTAAGCTGGATTGCCATCTTCGCACGCAGCACGGCATAAAGGTTTCCAAGGAAGCCTCTAAGAGCAGGAAGGATCTTGTTTGTGACTATTGTTTCAGAGTTTTTGAAAATATAGACGCTTTAACGACGCATAAAATATATCACCGTACGGTTGGTTATTTCGGATGCATATACTGCAAGAGGAAATTCAACACTTTGACTCTTTATAGAAAGCACAAAAACCATCACTTTGCTCAGTTGAATGTCGATAATCCAACTAAATGTGAACATTGCGATGAAACTTTCGTCGCTTTTAGAGAAATGATTTACCACATGAGAGATGTTCACGGAGACACCAAAGAGTGGCTTGTAATGCCCAAGGAATCGGTCGAGGAGACATGCCCTATCTGCAATAAGGTATTCTTTAACCTGCATAGGCATTTAGACTATCACGAAACGAACCGATGCAAAAAATGCGGCGAGTATTTCTACTCACGAACCGACTTCGACAATCACCTATGCGCCATTGAGAGCGACGACGAGGCGAGTTGCGCAGACCGAGACACACGCCCACAGTACGAGGAATGCCAATTCTGCTTCAAGCCTATAACTAGGAAGAGCTCCAGGGCGAAACACGATCACATACATAAAGGCTCTGGATCTATTTCTTGTCGATTCTGCTCGCATAAGTTTAAAACGATGGATGCATTTAACATACACGCTTTCTCTCATCGTAGTCGAAAATATAAGACTAATCCATTGAAATGCCGTAAATGTGGCGAGAAATTTATACAATATGGGCCATTCATGAAGCATATGAAGGAAGTGCACAAATCCATTCAAAAAATGCACTATCGAGCAGTAGTGAAGGCGGAGCGTTGCGTAGTGTGCGGAGACGAGTTCCCCAACCTGCACAACCACTACCGCGCGCACCTGCAGAACAGGTGTCTGGCGTGCCTCAAGTACTTCACCTCGTCGCGCCTGTTTGCCGAGCATGAGTGCGCCAAGCCTGACGCCGACCCCACCAAGGTCTTCACGTCCGAAGAGAATCTGACCTACCTCATCAACACTTACGTCCCCAAAGACGAAGTAGACGAACAAAAACATTACGCTCACAGCAACGAAGATCATGATGACGCCCGTACATCGCAGGGAGTGGTTGATGAAGAAAGTCAAAACTCGAATGTGAACGAACATTTCAGACTTCAGTGTCCCATTATATCTGATGTACTGTCGCTGTACCAGAAGCAAGAGGCGGGTAGCGCTGACGACGGCGACAACGCTGCAGATGCCGCCGTCGACGAAGTAATTGCGCTGTCAGATGACGAGGTGGGCGTGCTGGATAACGAAAGCTGCCCCGTTATTACTATAGACGATGATTAG
Protein Sequence: MALNLKLGKCRLCLKLGDFYSIFTVDNNVQLAEMAMDCARIKVYEGDGLPDKVCAECIQKLSSAHIFKQQCERADQELRRNNVPPPGFSVSPPPPNRQSCDSALSIQTDTSNQTKPSFNSEADPAKRKSRKRSHESIEDVSISSKSHDFRPTSSKRVEELRNSHKKPKKSGNYYEDSDYEDHSASHFSAETDSDEPLLKDKFRCKVCAKQFQSLKSLASHSRVHSRNKTKDVFPENVVVNIPKTNLQDASDVEDQLSCEKCGKSFKLKIMLNRHHDLCGKSSEKSPTKPIQKELLISLEPIDGIHSNKKIECQMCTTKFKTVENLEKHMKVVHAAVLQKVQSETKADNGKVSVPCIYCKKPFDDYYVHSEHFSKCPQNTNASTFECPVCKKVTTRKAAYFRHIKDVHFEPRMMTLKPEAAAEAPAAAARQAFFECRMCSKRLASEQLLITHLAAHVSNIDGGGDNDGADDESRQSTIEDSSSMLSDNSGNGPLQCNYCEKRFKYRKSLVSHELKHSQVEVKTEDEVMPSSSAAGAEAYREESASSGSGEEGDDNTCDICEKQFSYKRLLAHHKRTKHNMSSGTKRAPIILKDCLVRCLICDIDMKVSEVNEHNQKHIKANMKPRNLYTCIDCGEKFKSRTVLANHIKLVHRLKQLPPKQFEGADLADFCEVVVTKAEPLDEIQTHNGFGEVPCEQEYSPSVNLSGFTCTICGKNMPTLISLKRHVNWHSNVGNQLEKKIECFVCTETFRFQCHYKLHMREHYQDTNLDPKFLTCTICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDALPNTVDKSVYDGTHSCLHCGKVCDSENSLKHHMSWHNSKTLLFGARHECPICNITFTNKKRQELHTRTHYEDENGPFKCTICGKGYNDEIFFRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMIKQDPEAPPPRTFACKLCARVFRDERRLRHHEEAHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTTKHIDNPLKCPQCEELFVKGYDLHYHLRDVHDINETWIADRTEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCHVCYKAFHLQVKLDCHLRTQHGIKVSKEASKSRKDLVCDYCFRVFENIDALTTHKIYHRTVGYFGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDTKEWLVMPKESVEETCPICNKVFFNLHRHLDYHETNRCKKCGEYFYSRTDFDNHLCAIESDDEASCADRDTRPQYEECQFCFKPITRKSSRAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRSRKYKTNPLKCRKCGEKFIQYGPFMKHMKEVHKSIQKMHYRAVVKAERCVVCGDEFPNLHNHYRAHLQNRCLACLKYFTSSRLFAEHECAKPDADPTKVFTSEENLTYLINTYVPKDEVDEQKHYAHSNEDHDDARTSQGVVDEESQNSNVNEHFRLQCPIISDVLSLYQKQEAGSADDGDNAADAAVDEVIALSDDEVGVLDNESCPVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01136024;
90% Identity: iTF_01136024;
80% Identity: -