Pcor002734.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- L
- Assembly
- GCA_949127965.1
- Location
- OX421851.1:10211918-10235087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2e-06 0.00013 22.9 1.7 1 23 87 109 87 109 0.99 2 17 0.73 47 5.4 8.5 1 23 115 137 115 137 0.97 3 17 1.4e-06 9e-05 23.3 4.0 1 23 143 165 143 165 0.99 4 17 3.5e-05 0.0023 18.9 0.1 1 23 171 193 171 193 0.98 5 17 0.00042 0.027 15.6 0.1 2 23 209 231 208 231 0.95 6 17 8.4 5.4e+02 2.0 0.2 9 23 262 277 258 277 0.93 7 17 0.41 26 6.2 0.0 3 23 330 350 329 350 0.97 8 17 0.019 1.2 10.3 0.0 2 23 364 385 363 385 0.91 9 17 6.2e-05 0.004 18.2 0.6 1 23 393 416 393 416 0.94 10 17 0.044 2.8 9.2 0.1 1 23 421 444 421 444 0.92 11 17 0.021 1.4 10.2 0.2 1 23 503 527 503 528 0.94 12 17 0.00027 0.017 16.2 0.1 2 23 587 608 586 608 0.96 13 17 0.22 14 7.0 0.0 1 23 616 638 616 638 0.97 14 17 2.5 1.6e+02 3.7 0.7 2 23 646 667 645 668 0.93 15 17 1.2 76 4.7 0.3 1 23 742 764 742 764 0.94 16 17 0.0047 0.3 12.3 0.1 1 20 772 791 772 794 0.95 17 17 0.34 22 6.4 0.5 1 23 801 823 801 823 0.93
Sequence Information
- Coding Sequence
- ATGATCATGCTGTTCAAAGGCAACAGCAGCAGGCTGGAGCATCTCATCGAGAAGATACAGGCCAATAAGGAGAACCACGATGTCACTTCGGATGATTTGAAAGAAGCATTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCGTGGCCGTCATCGACGCCGGAGCCGTCGCCGTCGCCGACGTCGGCCGAAGCCGGCGCCGAGCCAGGCGACGCCGACGCGGAACCGCCGTTCACGCTCGGCGCAACGGAACACACGCCATACCAGTGCCAGTTCTGCGACAAGGCTTTCCCGCGCCTTTCGTATTTGAAGAAGCATGAACAGACGCATTCGGATCAGATGCCATTCCGCTGCGAGTTCTGTTCGCGGCACTTCAAGCACAAGCGTTCGAGAGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCCCGCACTGCGAATCCGCCTTCTCCAGGAGCGATCACCTAAAGATCCACATGAAAACGCATGACATTCAAAAGCCATTCCAATGCACGGTGTGCAACCGCGGCTACAACACGGCAGCGGCGCTGACGTCTCACATGCAGGGTCACAAGCGGGACCGGGAGGGCCGCGAGCCCGACCGCCGACGGGCGCTGCGGTGCCCGCGCTGCGGCGACGCGTTCCGGCGGACCGATCTGCTTCAGGCTCACATGACTAGCGCCCACGGCGTGGACGCCGCGGCCCTGACGCCGCCGCGGCGCGTCGCCTCGCAGCCGCCGCCCACGCTGCTCGCGTGCATCTACTGCACACGAGACACCTTTACTAGCATGGAACAATTGCAACTGCATGTACGCGCATCTCACTCCGCATTGTTGAACGGAGAAACTCCTGTAGATCAGAACGTAGACCAGCCCGCTCCGACTGATCTAAGCAAAAGAGCATCCGAAGAACCGCCAGTCAAACGTCGTCGTTCGGACTCTGCGACTCCTCAGCTAGCATTGTCGCCTGGAACGCTTCTCTGCAATCAATGTGATGCCGCCCTGCCAGATTTCGAAGCGTTTCGTGCTCACTTGAAGGGCCACTTGGAGGAGGGCGGAGAGTTGGGCCGGGGGAGCCCGACGCCGTGTCCGCATTGCGGCGCGTCGTTCGCGGACGCGGCCGCCTCGGAGCGTCATCTGGCTGCGCACTACCTGGCCGTCTCCTGCGAGTACACCTGCCACAGCTGCGCTCGGAGCTTCCCTACTCCGGACGACTTGCAGAAGCATCTTCTAGATCTACATGCTCATCATCTCTACCGCTGTTCCCTGTGCAAGGAGATCTTTGATTCGAAAGTAGCTATTCAGGTGCACTTCGCTGTGGCGCACAGCGGGGAGAGCAAGGTGTGGGTGTGCCGGTcgtgcgggggcggcgcgcCGCTGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCGCGCGCGgcacgcggcggcgcgctgcgcgtgcggcgCCGTGCTGCCCGGCGCGCGCGCCATGCGGGCCCACGCCGCCGCGCACCACGCCTACCGCTGCCCCGCGCCCGCGTGCACCGACACCTTCGCTGTGCAGTATTTACTTGAGAGGCACATGCAGGCTCACCATGCGATGCAGCACCAGGGTTTAAACGGCGAAAGCACGCGAACGAAGAGAGTCGAAAACAACAACTCTGGCGACGGCGCTGACGGCAACTGTTCACCTTGTGCCGGAGGCGCGGAAGCGAGCGGCGCTGGAGCTCCGGGGGAAGACCGTCGCAGGAAGAACGGTGCCGTGGCGCTGCAGTGCGCGTACTGCGGGGAGCGCACGCGCAGCCGCGCAGAGCTGGAGGCGCACACGCGGGCCCACTCCGGCGCTGCTGCTGCCAGACACAAGTGCCTAATCTGCGACGAGATATTGCCCTCCGCTGCTGTGCTGGCCGAGCATAAGCTCACACATTGCAAGGTGGTCGCTGGCGACACATGTGCAAGATGCCGCGCTCGGTTACCGTCCGAGGAATCGTTCCTGAGCCACATGGCGCGCCACCACCCCGCGCTGCCGGCGCCCTGCGTCATCTGCCGGCAGACCCTCGCGTCCGAGGCCGAGGCGCGGCTCCATGCGCGGTTCCACCTGCGGTCGTCGGGAGACGAGCAAAGGTGTGCGATCTGTCTGCGGGCGCTGCCGGAGGGCGAGGGCGGCGAGGGCGCGCGCGCGTGCTCGGCCTGCTACGCGCGCCACgcggcgccccgcgcgccgccgcccgccgaccACGACTGCCGGCTGTGCCGCCGTGCCCTCGGCTCCCCCACGCGCCTTCAGGCACACCTCATCGAGCACACGTTTGCTGGAATAGGCGCGTTCACCTGCTATTTATGCTCGGCCGTCTTTACCAGCGCGGCCGGCCTCCAACGCCACTTGCCTGAACACGCCTCCGCGCCCCGGCCTTACGATTGCGGCCGGTGCGGCGTGAAGTTCTTCTTCCGTGCCGAGTTAGACAACCATTCCTTCGTGCACCTCGAGGAAGCGGAGATAGCTCAGAGGGCGTTCTACGAGGCGTACGCTAGAGGCGCGGCTTCGGCTTGGGCCGCGCTGGCGCCGCcggagccgccgccgcaggtGTCCACGCCGACGCCGGCGATGGTAACCGATGTGCCCGTGAAGCAGGAGCCTGAGATAAAGGAAGAGAAAAACACTGACGAATACATAGAGGTGGgctccccgccgccgccgccgcccgcgccgtcccagccgccgcccgcgccctcgCCCGCGCCCGTCGTCAAACAAGAGAAGCCCGACGAAGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTSDDLKEALGSVGSTAGSSWPSSTPEPSPSPTSAEAGAEPGDADAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRHFKHKRSRDRHVKLHTGDRKYRCPHCESAFSRSDHLKIHMKTHDIQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCPRCGDAFRRTDLLQAHMTSAHGVDAAALTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRASHSALLNGETPVDQNVDQPAPTDLSKRASEEPPVKRRRSDSATPQLALSPGTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRGSPTPCPHCGASFADAAASERHLAAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRSCGGGAPLRSEAEGAAHVRARHAAARCACGAVLPGARAMRAHAAAHHAYRCPAPACTDTFAVQYLLERHMQAHHAMQHQGLNGESTRTKRVENNNSGDGADGNCSPCAGGAEASGAGAPGEDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRSSGDEQRCAICLRALPEGEGGEGARACSACYARHAAPRAPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGVKFFFRAELDNHSFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPPPQVSTPTPAMVTDVPVKQEPEIKEEKNTDEYIEVGSPPPPPPAPSQPPPAPSPAPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00411731;
- 80% Identity
- -