Pcor025746.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421879.1:6641674-6650443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.095 13.8 1.5 1 23 117 139 117 139 0.97 2 12 1.3e-05 0.00082 20.3 0.1 1 23 144 166 144 166 0.95 3 12 0.00028 0.018 16.1 0.2 1 23 172 194 172 194 0.92 4 12 0.001 0.065 14.3 2.0 1 23 200 223 200 223 0.94 5 12 0.0035 0.22 12.7 1.0 1 23 229 251 229 251 0.98 6 12 0.00079 0.051 14.7 0.4 1 23 255 277 255 277 0.93 7 12 1.2e-07 8e-06 26.7 2.8 2 23 284 305 283 305 0.97 8 12 0.0011 0.069 14.3 0.1 1 23 311 336 311 336 0.90 9 12 0.016 1 10.6 4.7 1 21 344 364 344 367 0.90 10 12 0.0024 0.16 13.1 3.4 1 23 373 395 373 395 0.97 11 12 9.4e-06 0.00061 20.7 0.1 1 23 401 423 401 423 0.98 12 12 1.3e-06 8.4e-05 23.4 3.1 1 23 429 452 429 452 0.91
Sequence Information
- Coding Sequence
- atgTCTTTTGAACTAGTAACAGTGAAGTCTGAGCCAGAAGATTTGGACATATCTGCCAACATCAAACAAGAGGTATTCGATGCAAAAATTGAGATAGAATTAGAATTTCCACCCTTAGAACAGGGCCAGATCAGTGCTTGCAATATTAAAGAAGAAATTCGAGAAGAATGTGATATCACCCGCAGTATTAAACAAGAAATTAGAGAGGAAAGTGATATCACTTGCCGTATTAAAAAAGAGAGTGATAGCACTTGCggtattaaagaaaaaatcaaAGATCATCACCCCACTGATATCCTTAAAGTTGAGATTAGAAGTGAAGATAAAGTTGCAGAAGTCCCCGGGGACTACCCGTGCCACCTCTGCGGGGCCCCGTTCCAATACCTTTCCCACGTAACAAAACATCTCAGTGAACACGTCCGGAAGAGCTTCCCATGCCCCGAATGCAATCGGGAGTTCATCCAGGCATCAGACCTTGAAGCACATCGAATATTCCATGAAGTCAAAACTTTATATCCGTGTGAAACATGCGATGAGAAGTTTATATCGAAAGAACTATTAGAAAAGCATTCCGATGAACACAGTTCAGAAGGTGCCTTCGAATGCAAGATCTGCCACAGAAAACTAAAAGCGAAGTATAGCTTAAAGATACATATGAGCGCTATGCATTCAACTAATAAGCCGTTCTCGTGCGAAGAGTGTCACATGCAGTTCCCAGCGCAGTGGAGACTCCGGCAGCACTTGAAAGTGCACTCCGGAGAGTTTCTGTGCACGTACTGCGAGAAGCAGTTCTCGTCGCAAGCAAAGTTGGATATACATGTGCTATTGCATACAGGGGAAAAGCCGGTGGAATGCCCTTTGTGTAAAAAGAGGTTCACGAGAAACCACAACTTGAAAGTTCACATGAGAATGCATACCGGTGAAAAGAAATTTGTTTGTGATGTCGAAGAGTGTGTTAAAGCGTTCTATACTAAATCAGACTTGACGTCCCACAAAGCAGCAGTCCATAGTAAAGACAAACCCAGACCCTTTAAGTGTACGTTGTGCGAATCAGCGTTCACGAAGAAAACTCAGTTGCGAAGGCATTTTGTGAACTGTCATAGCGATGAGACGCCTTATTCTTGTGAGGCGTGCGACCGCCATTTTAAATCGAAGACCAAATGGAAGTATCACATGATGGAGCATTTGGATAGCAAGAGGTTTGAGTGCGGGGTCTGCGGGGCTGGGTTCGCTATGAAGTATCAGTTAACGGCTCATATGAGACAGCATTCCAGCGGCTGGCCGTTTCCATGTGATTATTGTCATAAAAGTTTCAAATCTAAGTATAATTTGAATAGGCACGTTGTTAATATGCATAAGGGTGTAGAGCGGAGCTCTGACCCCACCAAGCATTGCTCTAGACCCTTGCTCCCCATGAAGCCTCCGGGTAAACGTCAAGTGAAGCGAAAACGGGACGAACAACAATGGGAGTGCAACAAGAGAAAGGAGGCCCGCAACCGAGGTCTATCCTACATATCCGTCCGCAAGAAGCTGATCCCAGCGAAGACGTTGAGAAACAGCAAAGACTGTCGCAACAAGTGCACATTCAAATGCAGCCAGAAGATTACGGATGAGGAAAAACTTGGCATATTCACAGAGTACTACAAACTGAGTCACACTGACAAACGGACATATGTGCTGGACAATACGGTTTGTTTGACACCGAGTGCGAGAAGAAAAGGGAAAACGAATGAGAACTCAAAGAAGAAGatggtttttaattattttttgacgGTGCGATTTGAGAAGATTAGAGTGTGCAAAACTTTCTTTTGTGATACTTTAGCGATAAGTCAGAAacctatttataatatacaCAAGTATTGTAGGCAAGAGTAG
- Protein Sequence
- MSFELVTVKSEPEDLDISANIKQEVFDAKIEIELEFPPLEQGQISACNIKEEIREECDITRSIKQEIREESDITCRIKKESDSTCGIKEKIKDHHPTDILKVEIRSEDKVAEVPGDYPCHLCGAPFQYLSHVTKHLSEHVRKSFPCPECNREFIQASDLEAHRIFHEVKTLYPCETCDEKFISKELLEKHSDEHSSEGAFECKICHRKLKAKYSLKIHMSAMHSTNKPFSCEECHMQFPAQWRLRQHLKVHSGEFLCTYCEKQFSSQAKLDIHVLLHTGEKPVECPLCKKRFTRNHNLKVHMRMHTGEKKFVCDVEECVKAFYTKSDLTSHKAAVHSKDKPRPFKCTLCESAFTKKTQLRRHFVNCHSDETPYSCEACDRHFKSKTKWKYHMMEHLDSKRFECGVCGAGFAMKYQLTAHMRQHSSGWPFPCDYCHKSFKSKYNLNRHVVNMHKGVERSSDPTKHCSRPLLPMKPPGKRQVKRKRDEQQWECNKRKEARNRGLSYISVRKKLIPAKTLRNSKDCRNKCTFKCSQKITDEEKLGIFTEYYKLSHTDKRTYVLDNTVCLTPSARRKGKTNENSKKKMVFNYFLTVRFEKIRVCKTFFCDTLAISQKPIYNIHKYCRQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -