Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421877.1:86421-89573[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9e-06 0.00019 22.3 0.9 1 20 170 189 170 192 0.93

2 12 2.1e-05 0.0014 19.6 1.3 1 23 237 259 237 259 0.97

3 12 0.09 5.9 8.2 0.5 1 16 263 278 263 280 0.84

4 12 8.7e-06 0.00057 20.8 3.3 1 23 291 313 291 313 0.98

5 12 5.4e-07 3.5e-05 24.6 1.0 3 23 321 341 319 341 0.98

6 12 7.7e-06 0.0005 21.0 1.8 1 20 347 366 347 366 0.98

7 12 0.00016 0.01 16.9 0.6 2 23 376 397 375 397 0.95

8 12 7.9e-05 0.0051 17.8 1.4 1 23 403 425 403 425 0.97

9 12 0.00067 0.043 14.9 1.3 1 23 431 453 431 453 0.98

10 12 0.0089 0.57 11.4 1.0 1 16 459 474 459 478 0.83

11 12 0.00038 0.025 15.7 2.9 1 23 482 504 482 505 0.95

12 12 8.9e-05 0.0058 17.7 1.8 1 23 513 535 513 535 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9e-06	0.00019	22.3	0.9	1	20	170	189	170	192	0.93
2	12	2.1e-05	0.0014	19.6	1.3	1	23	237	259	237	259	0.97
3	12	0.09	5.9	8.2	0.5	1	16	263	278	263	280	0.84
4	12	8.7e-06	0.00057	20.8	3.3	1	23	291	313	291	313	0.98
5	12	5.4e-07	3.5e-05	24.6	1.0	3	23	321	341	319	341	0.98
6	12	7.7e-06	0.0005	21.0	1.8	1	20	347	366	347	366	0.98
7	12	0.00016	0.01	16.9	0.6	2	23	376	397	375	397	0.95
8	12	7.9e-05	0.0051	17.8	1.4	1	23	403	425	403	425	0.97
9	12	0.00067	0.043	14.9	1.3	1	23	431	453	431	453	0.98
10	12	0.0089	0.57	11.4	1.0	1	16	459	474	459	478	0.83
11	12	0.00038	0.025	15.7	2.9	1	23	482	504	482	505	0.95
12	12	8.9e-05	0.0058	17.7	1.8	1	23	513	535	513	535	0.95

Sequence Information

Coding Sequence: ATGAAAGATGTGCTGCACCCAGGCCTACCTCTACAGAGCGTCTCGGCGACGCCggggctggcgggcgcggcgccgcggggctgcgcgggcgcgccACCGCGCGGGGTGCCCGCTGCCGACAGTGAAGTTGTGCTGGGCCCTGAGCCCGAGGTGCTCCCAGACCCAAACTATACATTTGAAGTTGAAGTGAAGATAGAAGACGAAGACAGCTATGAAGAAGAGCAAATACACTGTGACACCGCCGCAGGCACCCGCCCGGAGCCCgcagccgccgccagcgccaaaCCCAACCCGCCCACCATCAAGACCGAGAGCGCGCCAGCAGCACACAACCTAGAAACAGAAGTACATTTGAACTATGATTATGAATTATTCGTTGAATTCGAAAGCAAGGCCACCAAATTAATTTACACAAAAGAAGATGGCTACGATCAATTATTGTCTACTGAAGAAGAAACCCCCAAAACTACTAAACAACGTAAAACCGAGAAAAACGACTCCGGGGAACATGTTTGCAAAGTGTGTGGAAGACGTTTTAAGCGACTAGCAAACCTGAAGAAACATATACCGATCCATGATCGGCCGTACAGCTGTGCAGCTTGCGGGCTGAAGTACTGGCGAAGAGAGGACAGAGCGAACTGCCTCAAACACACAGAAGACGGCAAAGTTCGAGTGCTGAGTAAGAGCGAAGAGTACAACTTGAGAGCTCACGTGTGCGACGAGTGCGGGAAGCGCTTCGGCCGCATCTCCAACATGACCAAACACAAGCTGATCCACAACAAGCCCTATCAGTGCGAGACGTGCAAGAAAACGTTCTGGGACAAAGACAACATGCTCAAATGCAAGGGCACCCATCTCAACGACTTCCCTCACACCTGTGAGGACTGCGGCAAGAAGTTCAGAGAACGATACCTCCTGAATTACCACAGACGAGTGCACTCCGAGGGAAAGAAGTTTGGCTGCGATTACTGCGGACGCAAGTTCTACGATAAGTATCTGTTGACCAATCACATAAGGACCCACACCGGCGAGAAGCCGTACCCGTGTCCCAATTGCCCGAAGAAGTTCCGCACCAAGTTCCAGCTGACGCACCACATGTGGAGGTACGCGGAGCAGGAGCCGCTGCCCTGCAAGATTTGCCACAAGAAGTTCCCCGACCTGCCGACCCTGAAGCAGCACGAGCTGGTACACACCGAGAAGAGACCACACACGTgtcagGTGTGCGGCAAGAAGTTCGCGCGCCGCTGGAACCTGATCTTCCACGTGCGCATCCACACGCAGGAGAAGCCGTTCTCGTGCGCGCTGTGCCCGCGCCGCTTCCCGCACGTGTCGGAGCAGCGCCGGCACGCGCGCACGCACACGCGCGAGCGCCCCTACGAGTGCGACCTCTGCCACAAGCGCTTCGCCAGGAAGTACTACGTCACGCACATGCGCGGCGGGCCGTTCGTGTGCTCGGCGTGCGGCAAGTCGTACAAGCTGCCGCACTACCTCACCAAGCACGTGGCCAAGCACCACGCGGCCGCCGAGCGCGCGCCGCACGCCTGCGCGCGCTGCCCCAAGCGGTTCCCGACCAGGAGCAAGCTGCTGCGCCATCGCGCCACGCACTGA
Protein Sequence: MKDVLHPGLPLQSVSATPGLAGAAPRGCAGAPPRGVPAADSEVVLGPEPEVLPDPNYTFEVEVKIEDEDSYEEEQIHCDTAAGTRPEPAAAASAKPNPPTIKTESAPAAHNLETEVHLNYDYELFVEFESKATKLIYTKEDGYDQLLSTEEETPKTTKQRKTEKNDSGEHVCKVCGRRFKRLANLKKHIPIHDRPYSCAACGLKYWRREDRANCLKHTEDGKVRVLSKSEEYNLRAHVCDECGKRFGRISNMTKHKLIHNKPYQCETCKKTFWDKDNMLKCKGTHLNDFPHTCEDCGKKFRERYLLNYHRRVHSEGKKFGCDYCGRKFYDKYLLTNHIRTHTGEKPYPCPNCPKKFRTKFQLTHHMWRYAEQEPLPCKICHKKFPDLPTLKQHELVHTEKRPHTCQVCGKKFARRWNLIFHVRIHTQEKPFSCALCPRRFPHVSEQRRHARTHTRERPYECDLCHKRFARKYYVTHMRGGPFVCSACGKSYKLPHYLTKHVAKHHAAAERAPHACARCPKRFPTRSKLLRHRATH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01136008;
90% Identity: -
80% Identity: -