Pcor025779.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421879.1:7260771-7267407[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.18 13.0 3.7 1 23 121 143 121 143 0.97 2 17 0.00077 0.05 14.7 0.8 1 23 163 185 163 185 0.99 3 17 0.0023 0.15 13.2 0.1 1 23 208 230 208 230 0.98 4 17 0.0019 0.12 13.5 0.0 2 23 237 258 236 258 0.97 5 17 8.1 5.2e+02 2.1 0.3 3 21 323 341 322 342 0.90 6 17 0.0058 0.37 12.0 7.0 1 23 348 370 348 370 0.98 7 17 0.00059 0.038 15.1 0.8 1 23 376 398 376 398 0.95 8 17 0.0002 0.013 16.6 1.5 2 23 404 425 404 425 0.96 9 17 1.4e-06 9e-05 23.3 0.9 1 23 434 456 434 456 0.98 10 17 8.9e-05 0.0057 17.7 1.2 1 23 462 484 462 484 0.98 11 17 0.0032 0.2 12.8 4.7 1 23 490 512 490 512 0.95 12 17 0.00016 0.01 16.8 3.0 1 23 518 540 518 540 0.99 13 17 2.7e-05 0.0017 19.3 3.5 1 23 546 568 546 568 0.97 14 17 0.022 1.4 10.1 4.2 1 23 574 596 574 596 0.96 15 17 0.035 2.2 9.5 1.1 3 23 604 624 602 624 0.96 16 17 2.3e-05 0.0015 19.5 6.6 1 23 630 652 630 652 0.97 17 17 3.5e-05 0.0023 18.9 3.0 3 23 660 680 658 680 0.98
Sequence Information
- Coding Sequence
- atGGAGTGTGCAGAGGTGAAAcaggaggaggaggaggaggaggaggaggagaaGATCCTGTGGGCGGACCTGTGTGCCGGGGAGATCAAGCGGGAACTCATGCTGGGCCCCGAGTTCAAGGAGGCGGAATACCTAGAGTTGGGCTTGGACGCGCTGCCAGTATTTCACGGATATGGAACAGACAAGAGCATCCCAGATGAGACGGACGCGCTGAAGACGTTAGGAGACGCAATGTCCACCAACGAGTGCCTTGAGAAGTCCAGGATATTGGGGCTCAGTCCCTACTCCTGCGTGGTCAGCGACGAGAAGATCACACTCAAACCCTGCTATATCAAGCTTCAGCGGATCGACCAGAAGAAGTTCCAATGCAAAATATGCCAGAAGACGTTCCGCGAAAAGCGAACCCGCGACCGACACGTCTACACCCACACGCAGGAACAAATAAACACCattaaaatcgaaaagaaaagcAAAGGAACAGGCGACTTCAAGTGCCGCGTTTGTGGTGACAGACTATCCCGAAAAGATGGCTTAGTCAGACATCTTAAGAAGCACGCGAAACAAGATCCTTTTACAAAGCAAGTGCTCAAGAAGACGCGCGGGAAAATGATAAAGCAGTTTTACGAGTGCGATTTGTGTGGGATTCTGTTGACGAGGAAAGAAACGCTGGCGCAGCATTTGGCAAGGCACGAGGAACAGGAGCCTGTGTATTGTAGTGTCTGCAATGAGCCGTTCAAAATGGCGTGGGAGCTCTTGGATCATTTGAAGATTCATGAGGAAGCAGTGAAGGTTGGGCTGGATGATGAGATGGCCTTGGAAGAAAAAGCAAAGTCTGACAAGTCTGAGCACGACGATGAAAGCGATCACAAGCCGATTGATGATGTTGAAACCAGTGAAGATGATATCAGTGATGATGAATTAGCTATCGAAGAACCTGAACTAGAGACCAATGAAGAAACTAACTATTGCGGGATCTGTGAGTCACAATTCGACGCTTTGTCCTCGCTGAGTGAACATGTATGCAAGCGGCCAAAGAAACCTTTTTCTTGCGATGTTTGCAAGAAGAAATTCAAGCATCAGTGCCTTTTAGACACGCATTTCCGCATCCACACTGGCCAGAAACCGTTTTCTTGTGATGTTTGCAAAAAACAATTCAGAATAAAGGGCGAGTTGAGAAATCATAAAGTGATACACACAGATCAGAAACCGACATGCGAAATATGCCAGAAACAGTTTACTTCTAGTCGATCGTTGAAAATACACAAATTGCTACACACGGGCCAGAAACCAATGAAACCATATTCATGCAAAGTGTGCAAAAAGAAATATAAGTCACCGGGTGAATTAGAAACGCACATTCGTAGTCACACGGGTGATAAACCTTTCGTTTGCGACGTGTGCAAGAAACAGTTTCTGCGGAAGAGTGCTTTAAAAACACATTTACTAACGCACTCCGACAACAAACCGTATTCGTGCCAAGTATGCAAGAAACGGTTCCGCGAAAGCCATAAATTAAAATCTCACAGCACCATCCACACCGGAGAGAAACAGTACACTTGCAAAGTTTGCAAGAAACAGTTCCGTCTGAGTTCGACATTTGCGAACCATAAACGAATCCACACCGGTGAAAAACCTTTTGCGTGTGAATTCTGCCAGAAACGGTACAAACAGCGCGCTCATCTAATCCGCCATCGACGGATTCACACAGGCGAGAAACCTTTCAGCTGCACGATGTGTGATAAAGCTTTTACAGACAAATTTATTCTGACGTGCCACACCCGGACTCACACAGGACAGAAACCCTACGGGTGCGATGTGTGCAATAAACAGTTCTCAACATTGGGCTCCTGTGCTGTCCACAAGCGAATCCACACAGGCCAGAGACCGCATGAGTGCAAAGTGTGTAAGAAAAGGTTTATACGGAAGGAGCATCTGAAAACTCATATGACATCGCATTCTAGAGTGAGGGCGTACGGCTGCGATGTGTGCAAGAAGACATTCAAACAACGCAAACACCTGATGGGTCATTTGAGAATGCACACGGATGAGAAACCGTGTGTGTGA
- Protein Sequence
- MECAEVKQEEEEEEEEEKILWADLCAGEIKRELMLGPEFKEAEYLELGLDALPVFHGYGTDKSIPDETDALKTLGDAMSTNECLEKSRILGLSPYSCVVSDEKITLKPCYIKLQRIDQKKFQCKICQKTFREKRTRDRHVYTHTQEQINTIKIEKKSKGTGDFKCRVCGDRLSRKDGLVRHLKKHAKQDPFTKQVLKKTRGKMIKQFYECDLCGILLTRKETLAQHLARHEEQEPVYCSVCNEPFKMAWELLDHLKIHEEAVKVGLDDEMALEEKAKSDKSEHDDESDHKPIDDVETSEDDISDDELAIEEPELETNEETNYCGICESQFDALSSLSEHVCKRPKKPFSCDVCKKKFKHQCLLDTHFRIHTGQKPFSCDVCKKQFRIKGELRNHKVIHTDQKPTCEICQKQFTSSRSLKIHKLLHTGQKPMKPYSCKVCKKKYKSPGELETHIRSHTGDKPFVCDVCKKQFLRKSALKTHLLTHSDNKPYSCQVCKKRFRESHKLKSHSTIHTGEKQYTCKVCKKQFRLSSTFANHKRIHTGEKPFACEFCQKRYKQRAHLIRHRRIHTGEKPFSCTMCDKAFTDKFILTCHTRTHTGQKPYGCDVCNKQFSTLGSCAVHKRIHTGQRPHECKVCKKRFIRKEHLKTHMTSHSRVRAYGCDVCKKTFKQRKHLMGHLRMHTDEKPCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135997;
- 90% Identity
- -
- 80% Identity
- -