Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421862.1:12092732-12096861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00072 0.047 14.8 1.9 1 23 131 153 131 153 0.98

2 13 8.9e-06 0.00058 20.8 4.0 2 23 159 180 158 180 0.96

3 13 0.026 1.7 9.9 0.1 2 23 182 203 181 203 0.97

4 13 0.00013 0.0084 17.1 1.5 1 23 218 240 218 240 0.99

5 13 1.2e-06 8e-05 23.5 1.1 1 23 252 274 252 274 0.98

6 13 2.2e-06 0.00014 22.7 3.0 1 23 280 302 280 302 0.99

7 13 2.9e-06 0.00019 22.3 3.6 1 23 308 330 308 330 0.98

8 13 2.8e-05 0.0018 19.2 3.4 3 23 338 358 336 358 0.93

9 13 0.0058 0.38 11.9 2.8 1 23 364 386 364 386 0.95

10 13 3.8e-06 0.00024 22.0 0.3 1 23 392 414 392 414 0.98

11 13 0.0058 0.38 12.0 5.3 1 23 420 442 420 442 0.98

12 13 1e-06 6.7e-05 23.7 1.4 1 23 448 470 448 470 0.99

13 13 0.00033 0.021 15.9 1.5 1 22 476 497 476 498 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00072	0.047	14.8	1.9	1	23	131	153	131	153	0.98
2	13	8.9e-06	0.00058	20.8	4.0	2	23	159	180	158	180	0.96
3	13	0.026	1.7	9.9	0.1	2	23	182	203	181	203	0.97
4	13	0.00013	0.0084	17.1	1.5	1	23	218	240	218	240	0.99
5	13	1.2e-06	8e-05	23.5	1.1	1	23	252	274	252	274	0.98
6	13	2.2e-06	0.00014	22.7	3.0	1	23	280	302	280	302	0.99
7	13	2.9e-06	0.00019	22.3	3.6	1	23	308	330	308	330	0.98
8	13	2.8e-05	0.0018	19.2	3.4	3	23	338	358	336	358	0.93
9	13	0.0058	0.38	11.9	2.8	1	23	364	386	364	386	0.95
10	13	3.8e-06	0.00024	22.0	0.3	1	23	392	414	392	414	0.98
11	13	0.0058	0.38	12.0	5.3	1	23	420	442	420	442	0.98
12	13	1e-06	6.7e-05	23.7	1.4	1	23	448	470	448	470	0.99
13	13	0.00033	0.021	15.9	1.5	1	22	476	497	476	498	0.92

Sequence Information

Coding Sequence: ATGCTTAATATAGATACCACTTgtcgaacatgtatgaagaatGGAGAAAATTTGGTGGATATTTTTGATCCCTGGAAGACTGAAAATGAGCAGACTACGCAACTCTCAGAGATCTTGGAGACTTTCACAGGAACACAGGTTTCTAAAGAAGAAGGATTACCTATGAAGTTATGTGAAGAATGCGTCAAATCACTTCAATTCTTGTTTGCCTTCCGTCAACAAGTACTCAACTCCTACGACGAGTTGAGAAAAGTGATCCAATCTCAAACCAATGTGAAAAACGAACATATCGTATTAGACCTTAAGACAGAGAACCAATTTGATTATGATTTCTGTTACGACGATTTCCTACTTGACGATTTTCCTAAACAAGAGACTGATGATAAAGGCTATGCTTGCACTGAGTGTAATAAGCAATATGTAAATGAGAAACGGTTTCTGAAACACCTCAAAACACATGAGGATCCTAGCCTACACTGTACAATATGTGGGAAAGTTTTTCATAACCAGTCCAATTTGGACCGTCACCTATCTAAACACAATAAATGTACAATATGCCTTAATGACTTTGAATCGGAGGCTCAACTATTAGAACATATGAATGAACATGTAGACGGAGTCCAGATAAAGACTGAGGAAGAAGACATTTTGTACAAATGTGCAGAATGTGATGCAGTTTACACAAAACACAGATCTTTAGCTATGCATATGAAGAAGCATAAGTTTAAAGGGAAGATTGAAGGCAAAAAAGATTATGAATGTGATGTTTGCTCAAAGGAGTTTACGTTGAAGAGTTTATTACGTAGGCATATGAAGTTGCATAGCGAGGAACGCCCGTACCAGTGCCTGAAGTGTAACAAAAGCTATTCTAGACAAGACCAGTACAATGATCATATGAATAAACATAATGGGGTCAGGCCTTACGCCTGTCCCCATTGTAGTAAAGCCTTCACGCAGTTGTGCAGCCTGAAGGACCACATCCGCACCCACACGGGGGAGACCCCGTTCCTGTGCTCGTGCTGTGGCAAGGGCTTCAACAACAGCTCCAACCTGCGCCAGCACATGATGCGCCACACCGGACTGAAGCCATTTGCTTGCAACTTGTGCTCCAAACGATTCTCCACCAAAGGCCAGATGACGTGCCACATCGGTACGCACACTGGAGTGCACCCGTACAAGTGCGAGGAGTGCGGCGCGGCCTTCACCAAGCCCAACTCGCTCAAGAAACACAAGCTCATCCACCTCGGCGTCAAGCCGTTCCCGTGCGACACCTGCAGCATGCGTTTCGCGTGCAAAGACCACCTGAAGCGGCACTACCGCATCCACACAGGCGAGAAACCGTACCGCTGCCAGTACTGCGAGCGCGCGTTCACGCAGAGCAACGACCTCGCCAAGCACACCCGCATGCACGTCGGTCAGAACATATACCAATGCACAAAATGCGACATGCGCTTCCGTCTCCTGAGCGAGTTGAAACAGCACTACCCTACACACTACATTGCCGACGGAGAACCGCCTTTAGTACCAGTAAGTAAGGACGAATCGGCGCCGGTCCTCGTCCTGAAACCGCCCGAGCCCGAGAAAGAGACGGAGGGCACTATCACCATCACTTTCAGCAGCAACGGGTTGGACAAGGACGGACTGCATGGGAATATAACGATTGATATCACGCCGCAGAATACGTAG
Protein Sequence: MLNIDTTCRTCMKNGENLVDIFDPWKTENEQTTQLSEILETFTGTQVSKEEGLPMKLCEECVKSLQFLFAFRQQVLNSYDELRKVIQSQTNVKNEHIVLDLKTENQFDYDFCYDDFLLDDFPKQETDDKGYACTECNKQYVNEKRFLKHLKTHEDPSLHCTICGKVFHNQSNLDRHLSKHNKCTICLNDFESEAQLLEHMNEHVDGVQIKTEEEDILYKCAECDAVYTKHRSLAMHMKKHKFKGKIEGKKDYECDVCSKEFTLKSLLRRHMKLHSEERPYQCLKCNKSYSRQDQYNDHMNKHNGVRPYACPHCSKAFTQLCSLKDHIRTHTGETPFLCSCCGKGFNNSSNLRQHMMRHTGLKPFACNLCSKRFSTKGQMTCHIGTHTGVHPYKCEECGAAFTKPNSLKKHKLIHLGVKPFPCDTCSMRFACKDHLKRHYRIHTGEKPYRCQYCERAFTQSNDLAKHTRMHVGQNIYQCTKCDMRFRLLSELKQHYPTHYIADGEPPLVPVSKDESAPVLVLKPPEPEKETEGTITITFSSNGLDKDGLHGNITIDITPQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00462615;
90% Identity: iTF_00156466;
80% Identity: -