Pcor023495.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:7405487-7414155[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0065 0.42 11.8 0.5 1 21 87 107 87 108 0.94 2 27 0.015 0.99 10.6 0.5 2 23 180 201 179 201 0.97 3 27 0.027 1.7 9.9 0.1 1 23 205 227 205 227 0.95 4 27 1.3 83 4.6 1.7 1 21 232 252 232 255 0.78 5 27 2.2 1.4e+02 3.9 0.5 1 11 261 271 261 275 0.89 6 27 0.025 1.6 10.0 0.6 1 23 349 372 349 372 0.93 7 27 0.49 32 5.9 0.3 2 23 399 421 398 421 0.92 8 27 2.3 1.5e+02 3.8 3.5 1 23 443 465 443 465 0.96 9 27 0.00012 0.0081 17.2 0.5 1 23 469 491 469 491 0.98 10 27 3.9 2.5e+02 3.1 0.3 1 15 496 510 496 519 0.75 11 27 0.0057 0.37 12.0 0.2 1 21 525 545 525 548 0.90 12 27 0.011 0.74 11.0 1.2 1 23 555 578 555 578 0.94 13 27 0.00031 0.02 16.0 2.0 1 19 585 603 585 606 0.95 14 27 0.037 2.4 9.4 0.4 2 23 619 641 618 641 0.93 15 27 0.11 7.4 7.9 0.1 1 23 714 736 714 736 0.95 16 27 0.045 2.9 9.2 6.9 1 23 804 826 804 826 0.95 17 27 0.02 1.3 10.3 0.1 3 23 832 852 831 852 0.95 18 27 0.0097 0.63 11.3 0.7 1 23 860 883 860 883 0.95 19 27 0.011 0.74 11.0 2.3 1 23 944 967 944 967 0.94 20 27 0.024 1.5 10.0 0.7 3 23 1035 1055 1033 1055 0.96 21 27 4.5e-05 0.0029 18.6 1.0 1 23 1059 1081 1059 1081 0.98 22 27 0.00012 0.0076 17.3 0.5 1 23 1086 1109 1086 1109 0.96 23 27 0.0013 0.083 14.0 1.8 1 23 1115 1138 1115 1138 0.98 24 27 0.06 3.9 8.8 1.5 1 23 1145 1168 1145 1168 0.95 25 27 0.00099 0.064 14.4 1.5 1 23 1174 1196 1174 1196 0.96 26 27 1.1e-06 7.1e-05 23.7 1.1 1 23 1202 1224 1202 1224 0.99 27 27 2.9e-05 0.0019 19.2 5.1 1 23 1230 1252 1230 1253 0.96
Sequence Information
- Coding Sequence
- ATGATCCCTGAAAAAGTTAGAAGAACGTCCAGGAAGCTATCTCAAGAgacaatttttctatttttaggaCGCAGCCAAAGCGAACACGAAACTGTGATAAAGATAGAGGCTACCGGTGTACCAATAGAGCATTTGCTCAAAGAAAAGCCGCGGTACCAGAGGAGCGCTCGAGCGGAAGCTAGGCTCGCCATCAAGAAAAATGCTACCGCCAtccttgcatgctggtctgttGTTCCCTTCAGATGGAAGAGAAACCAGTTCAAATGCGCCTACTGCGAAGCCAGCTTCACAGACTGTAACCTCTTGAGGCTCCACGTAGCAACTTGCTCTTCACAACACAGCGTCAAAGACATTTACAGCAAATTCAAAGAGATGTCCCTCATCAACATCGACGTGACTGAAGCACTATGTCGTCTTTGTTCTATGCCATACGCAGACGTGAAACAGATGCGTGAACACGTCATCGATCACGGATACAATTTTGAAACGAAACAACCGGACGGCGTCCTCCCGTTTTGCCTTGATAAAGAATCGTGGAGATGTGTGATATGTCAAGAAAAGTTCAACAATTTCCTAAAACTCTATGAGCATATGAATGTGCATTATCAGCATTATATTTGTGCCACGTGCGGGAAGGGTTACATGACTGCGCCTAGATTGAGAAAACATTCAGAAGTGCATATAAGCGGATTGTTTCCGTGCAATGAATGTGTCCGGACGTTTAAAATGCGAGCTGCGAGGGACCACCACAAGGCGCACGCCCACGCTAAAGCGCCAAGATACGAATGCCCCCAATGCAACATGCGTTTCGACGGTTACTACGATCgttCCGCTAGTGCGGTAGCAGAGGCAAAAATAGGAGTTAGACGAGTTAGGAGATTAAAGGACAACGTTAGCGCGCGGCAATTGCGCCGGCGTCGCCGCGCGAACAACGAGTTGCCCGAGGAGTCCGAAAAGCGGATATCAAAAACTATGATGCGGAGGAACGCTATGACGCTTCTCGAATGTTCTACCGCTTGGGCCTTCCGATGGTTCCACAGCGCGTTTTACTGCTCATACTGTGATGCTAAGTTCGTAGACACCACCCCGTTACGTGAACACGTCTTTAGCAATCACCTAAAAGAACCAcccactaaaaaaatatttgcgaaGTTGACTGAAAATAATATGGTTAAAATTGATATAGGGAACCTCAGCTGCAGGCTATGCAATCATCCTTTGACGGACGTGGACGATCTGAAAGATCATCTAGTCTCTTTACACGGGAAGGTGTTAAATTCTGAATATAGTGATGGTGTTTTACCCTTCAAACTAGACCAAAACGGATTCTTTTGCCAAAAGTGCTTCTCCCATTTCATAAGTTTCGCTAAAGTGAACGAACATATTAATACACATTACAAAAATTACGTTTGCGATGCGTGCGGGAAAGCTTTCGTGTCTAAGTCCAGGTTCAGAACTCATGTGCAATCCCATGAAACTGGAAGCTTCCCCTGTGGGGATTGTGGGGAAGTTCTAGAAACAAGGGCAGCTAGGATGTGCCATAGGCTGCGGGTGCACAAGAAGGGTGTGCGGTACACTTGCCCTCGATGCCCTGAAGTCTTCACAACGTATTACGCCCGCGCGAAACACTTGGTAGACGACCACGCTCAGCAGCAAAGAGATTATGACTGCGCCGTTTGCGGGAAATCGTTTGAAACTAGCTGCAAAAGAGCAGCGCATTTCCGCAACGCCCACAAACCTACTGAGAAACGATACGAATGCCCTCAATGCCACTGGCACTTTTATTCTAATTCGAAACTCAGACGCCACGAAGTACGGAACTCGTTTCCCCTTCGAATAGATATAACTGATCTCACATGCACTATATGCGATCAAAAAGTCAAGGAGCTAAATGATCTCAAAACTCATTTGTCGGAATCTCATTCAAAGGAATTTAAATCGGAGTGCAGTGATGGCGTTATACCATTTGTGCTGACGGGGAAGGAATACAGATGCGTACATTGTGATGTGCTTTTCGAAGggtCCGTCGACCACAAACTTAAATGGAAACCGAAGCGCAAGTATAATGATCATAGAGACAACGCGGCTATTATAATTGAGTGTTCCAACGTCTGCCCGTTCAGGTGGAAGAGAGGCGCTTTCACCTGTGCGTTCTGTCCAATTTCCTTCGGAGACTTTAGCAGCGTGCGAGAACATGCGCTTGAGCATCCGAACCGGGTCGAGGCAATGCGTCTTGCGCGCCCCCTAGACAACGTCAAAGTAGAAATCAGTGACCTACGCTGCGAACTCTGTTTACTGCTAATGAAAGATGTTGAAACACTGAAGGATCATTTACTCCAAAATCATAACAAGCCAATAAGCAATGATCATAGCATCGGCATCACTCCTTTCTTAATTAGCGGAAAGGACTTCCTTTGCACGCACTGCGGCGAACACTTCGAGCTTTTCTCAAAATTAAACACTCACATGAACCACCATTACCCTAATAACATTTGCTTTCTATGCGGCAAAGCGTTTGCCGCTGCCCACAGACTAAAAGCGCATTTAGTTATACACGAATCTTCAAACGTTCTACAGTACAAATGCTCGAAATGTGACGACGTCTTTACGACTAGGGCTTTGAAAAATAGTCACATGGCTTTAACACACGgaCGGAAAAGTGAAGATGGCATTAAACAGGAAGTATTGTCGGACACGGAGGGCAATCCCACCGTCCGCATCGCTGCCAACCGAGTCGAGGCTGAAAAGAAGCGAGCCAGTTTCAGAAATAACATGTCTGCTATCGTAGGCACCTCTACAGCATACCCCTTTAAATACAGAAGAGGGGTCTATCTCTGTTACtactgtaaacaaacatttataGAACCAGAGAAGCTTCGACATCACAATCGAGTTAACCACCCCGAACCAAAGCTACTGCTTAAACCTAGAAAATATGAGCCATTAAAAGTGGATTTTGTGGacgccttgtgcaaggtctgcTTTGTGCAACTAGACAACTATGAAATGCTGAAAACACACCTACCTGCACACGGTAAACACATAGACATGACGCACGGAGAGACGATACTACCCTACAAATTGGGAGCGGAAAAGCAAATATGTCAAATATGCGGAAAAATATACGAAGTGTTCTTGACTTTACACAAGCATATGAACGATCATTACGAGCATTACATATGTGAGAAGTGCGGCAAAAGATTCGCAACATCTCAGAGAATGCTCAATCATATCAAAACTCACGAAGAAGGCGTTTTCCCCTGCAAGCATTGCGGTGAAACCTTTACTACTTACGCGCCCCTTTACAGTCACATTGCAAGAGTGCACAAGTCTAATAAAAGATACAAATGTCCAATATGCGACGTGAAATTCATCTCTTACAAACAGAGGATAAAACATCTACATACAGTACATGAGCAAAAAACACCGCTGTTTCCTTGCCCTTCATGTGATAGAGTATTTGATTTGTGCAGTAAGAGGTCAGCGCATATTAGGTTCCAACACTTGCAGGAACGTAACCACGTGTGCAGTGTCTGCGGCATGAAGTTTTTCAGCAACTACGAACTCCAAGAGCACACAGTCAAACACGACGGcgatagaatttaccagtgtgACATCTGTAAGAAGTCGTATGCCAGACTCAAAACTTTACGAGAACATATGCGGATACATAACAATGACAGGCGATATACTTGCTCCGTGTGCGGACAAACGTTCATTCAAAAATGTAGCATGAAACAGCACATGAGAGTACATCATCCCACACATTTGTAA
- Protein Sequence
- MIPEKVRRTSRKLSQETIFLFLGRSQSEHETVIKIEATGVPIEHLLKEKPRYQRSARAEARLAIKKNATAILACWSVVPFRWKRNQFKCAYCEASFTDCNLLRLHVATCSSQHSVKDIYSKFKEMSLINIDVTEALCRLCSMPYADVKQMREHVIDHGYNFETKQPDGVLPFCLDKESWRCVICQEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGLFPCNECVRTFKMRAARDHHKAHAHAKAPRYECPQCNMRFDGYYDRSASAVAEAKIGVRRVRRLKDNVSARQLRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDTTPLREHVFSNHLKEPPTKKIFAKLTENNMVKIDIGNLSCRLCNHPLTDVDDLKDHLVSLHGKVLNSEYSDGVLPFKLDQNGFFCQKCFSHFISFAKVNEHINTHYKNYVCDACGKAFVSKSRFRTHVQSHETGSFPCGDCGEVLETRAARMCHRLRVHKKGVRYTCPRCPEVFTTYYARAKHLVDDHAQQQRDYDCAVCGKSFETSCKRAAHFRNAHKPTEKRYECPQCHWHFYSNSKLRRHEVRNSFPLRIDITDLTCTICDQKVKELNDLKTHLSESHSKEFKSECSDGVIPFVLTGKEYRCVHCDVLFEGSVDHKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPISFGDFSSVREHALEHPNRVEAMRLARPLDNVKVEISDLRCELCLLLMKDVETLKDHLLQNHNKPISNDHSIGITPFLISGKDFLCTHCGEHFELFSKLNTHMNHHYPNNICFLCGKAFAAAHRLKAHLVIHESSNVLQYKCSKCDDVFTTRALKNSHMALTHGRKSEDGIKQEVLSDTEGNPTVRIAANRVEAEKKRASFRNNMSAIVGTSTAYPFKYRRGVYLCYYCKQTFIEPEKLRHHNRVNHPEPKLLLKPRKYEPLKVDFVDALCKVCFVQLDNYEMLKTHLPAHGKHIDMTHGETILPYKLGAEKQICQICGKIYEVFLTLHKHMNDHYEHYICEKCGKRFATSQRMLNHIKTHEEGVFPCKHCGETFTTYAPLYSHIARVHKSNKRYKCPICDVKFISYKQRIKHLHTVHEQKTPLFPCPSCDRVFDLCSKRSAHIRFQHLQERNHVCSVCGMKFFSNYELQEHTVKHDGDRIYQCDICKKSYARLKTLREHMRIHNNDRRYTCSVCGQTFIQKCSMKQHMRVHHPTHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -