Pcor022981.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:3039924-3043291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00023 0.015 16.4 0.6 1 23 87 110 87 110 0.97 2 20 0.75 49 5.3 0.9 2 23 137 159 136 159 0.95 3 20 0.00075 0.049 14.8 0.4 2 23 182 203 182 203 0.98 4 20 0.0035 0.23 12.6 0.1 1 23 207 229 207 229 0.96 5 20 0.022 1.4 10.2 0.8 1 19 234 252 234 257 0.89 6 20 2 1.3e+02 4.0 1.6 2 23 265 287 264 287 0.79 7 20 7.4e-05 0.0048 17.9 2.5 2 23 295 317 295 317 0.97 8 20 3.4e-05 0.0022 19.0 0.6 2 23 324 345 323 345 0.97 9 20 1.4e-06 8.8e-05 23.4 0.6 1 23 351 373 351 373 0.99 10 20 0.0024 0.16 13.1 5.3 1 23 379 402 379 402 0.96 11 20 0.00045 0.029 15.5 0.4 1 23 604 627 604 627 0.94 12 20 0.45 29 6.0 0.1 2 23 655 677 654 677 0.96 13 20 0.14 8.8 7.6 2.6 2 23 700 721 699 721 0.95 14 20 0.00021 0.014 16.5 0.2 1 23 725 747 725 747 0.98 15 20 0.015 0.96 10.7 4.6 1 23 752 775 752 775 0.96 16 20 6 3.9e+02 2.5 0.5 2 23 783 805 782 805 0.82 17 20 0.00048 0.031 15.4 3.5 2 23 813 835 812 835 0.95 18 20 6e-05 0.0039 18.2 1.1 1 23 842 864 842 864 0.97 19 20 2.6e-05 0.0017 19.4 1.0 1 23 870 892 870 892 0.97 20 20 0.00032 0.02 15.9 5.1 1 23 898 921 898 921 0.97
Sequence Information
- Coding Sequence
- ATGGGGcgtgaagaagaagaaactCTCGCTTCAACATCTAATAGTAGAACACAAATTCCCAGCTCATCGCACCTTGTGAAATCACCGGCCAGTATTTTAACAAGAGATCCAAAGAATATATCAGAAGTAACAACAGATTCGTCAAAGAAAATAGAAGGCAGAAAAATGTCGGCGGAAATggctaaactcgtcgcaaattTCCAAATACTGATAAGTTGCTCTAACGCGACCCCTTTACGCGCGCTGCACGGCCTTAACTACACTTGTTACTTCTGTGATAAGCAATATCCTGACCCAGCCGATCTCAAGAACCACACATTGAAGTCACACCAGGACTTCCGCCACACCTCGTCAACGAGGTTGCCCACACTGTACAACTATTccgtcaaactcgacatcactGAATTGACATGCCGCTTTTGTTTCCAACCATTCGATCAATTCTTTGGGTTCATGGACCATTTGCGTCTCGAACACGACCAGCCGATCCACACGGACGTTAAAAACTACATGCTACCTTTTAAATTTGACAGCAATCCTCCCAAATGTGTCTTGTGTGACACTGAGTTCAACACTTTCAGGAATCTCGTTGAGCACATGAATATACACTTCAGGAATTTCGTTTGCGAAGTCTGCGGTGCTGGTTTCATCAACAGGGCTAGCTGGAAAACTCACAAAGCCAACCACGACTACGGAGACTTTCCGTGCACGAAATGTCCGCAAGTCTTCAGTTCTATGTTGAAACTGAGGAATCACGATCGCTACCTCCACTTGGGGCTAGGCAAGAGGAACAAATGCGCGTATTGCGGTGAAAAGTTCAGTTGTTTGATATTAAAGAACAATCATATGGTCAAAGAGCATGGAGTGGCGAAAACAGCGGCGAAATGTAAAGCCTGTGACAAGACGTTCAGCAACTACGCTAACCTTCGCTTGCACAAAAGAAGGTTTCATTTACAGGAGAAGAAAGTCAAGTGCCCcgagtgtgaaatgatgttccGTGACTCGCACGCACTAAAAGAGCATATGGTTAAGCACACGGGAgttcgtgatttcaaatgcaGTATTTGTGATAAGGCTTACGGTAGGAAGGACACCCTGAAGGAGCATCTGCGTATCCATGCGAACGATAGGAAATTCAAGTGCCAATATTGTAAGATGGCTTTTGTGCAGAAATGCTCCTTGAAATCTCATTTGTATTCTAAACATGGTAATCCACGCCTTCTAACTGATAGTACGGTTAAACTATCGGGTTTGGAAGTAACTGAAATGGATGGTAACGATTTAATAGCCCCTCTAATCGAAGACGATGAAATAGACTACGAACTACTATTAGACCTACAAGGAACtgataaaaatcaagaagtgatTGAATCAAGACAAGATGAAACGCCATCACCTGCACCGTTTTGtactgaatatatttttaaatatgaatcaAATTCACAGTCGCCCTCGGCTGATCATAGTAGTGATCAATTTGATCCAGAATCACCTTCAAACGCAGAGCGTATAGATGAATTAGAGgagatttcttcaaatattgaaTACCTAGATGAAACTGAAGTAGAATACCGCTTAACAGAAAGGATACAACGTTCAAAAGAGACTGTAGAACACGAAGCTGAAATTGAAAGTAGAGACGTGAATGCCGACAAACCTAACAAGAGCTCTAATTTAAGTGACATTAACATGAAAACTGTAATCGAAGACATGGAGGAATACGACAGACAAGTCCAATACCATCACGAGAATTTGCGTACCGTACTTCGATGCTCGAACGCTACGACGTTTCTTTGCCGCGGGATATGGTACCTGTGCACTCTTTGTCGCACTAAATACACAGATCCTAGTGATTTAAAAGCGCATACTTTAAAGGCCCACAAATCTTTGAAATCCCAACGCAAGTTGTACTCGGCTCGCAAAATGAACCGCTACATCGTGAAACTTGATATCACTGACTTGCAATGCAAGCTATGCTCCATTGAAATCGACAGTTTGAAGGACCTGATGGAACATCTGAATTCGGATCATGGTGAACCCGTGCACAGGGATCTGCCGAACCATATGATCCCCTTTAAGTTTGATGGCGACGTCTTACGCTGCACTGAGTGTGACCGCGAATTCGCGTTCTTCAAAATGCTGCAGTGCCACATGAATGATCACTATAAGAATTTTACTTGCGAGGTTTGCGACACTGGTTACGTGTCTTTTGGCAGTCTCGTCCAGCACATGCGCCTGCATGCCGACGGCGAGTACAAATGCAAATGGTGCCAGAAGCTGTTCCACAACAAACATAAGTTGGCAGACCATGTCAAGTTGGTGCATTTTGGTCATAAGATGAGAAATAAGTGCGCTTACTGCGACATGAAGTTTTTGGTTTTCGAAACTAGAAACAAGCATATGGAGGAGGAGCATGGCTTGAAGGCGCCTGTGGTGCAATGTCAAGCGTGTACGAAAACTTTTAGATCCACGAGACACCTGACAGCACACATGAAGAACTTTCATTTGATAGGGCAGAAGAATCACGAGTGCTCGCTATGCGACAGGCGTTTTTCAGCACCGCATATGTTAAAAGCACATATGGCGGTACACTCGACTGAGAAGGAATTTAAGTGTATCGTGTGTGATAAAGCGTTCTCTAGAAAAAAGACTCTTCGGGAACACGTCAGGATCCACGCTAATGACAGAAGGTTCAAGTGCGAACACTGTGGGATGAGCTTTGTACAGAAATGCAGTTTAACTGGCCATCTGAAGAATAAACACGCGGATAAGGACCAGGATAAGTTGGTCATACAGCAAGAAAAGTGCGGCTAG
- Protein Sequence
- MGREEEETLASTSNSRTQIPSSSHLVKSPASILTRDPKNISEVTTDSSKKIEGRKMSAEMAKLVANFQILISCSNATPLRALHGLNYTCYFCDKQYPDPADLKNHTLKSHQDFRHTSSTRLPTLYNYSVKLDITELTCRFCFQPFDQFFGFMDHLRLEHDQPIHTDVKNYMLPFKFDSNPPKCVLCDTEFNTFRNLVEHMNIHFRNFVCEVCGAGFINRASWKTHKANHDYGDFPCTKCPQVFSSMLKLRNHDRYLHLGLGKRNKCAYCGEKFSCLILKNNHMVKEHGVAKTAAKCKACDKTFSNYANLRLHKRRFHLQEKKVKCPECEMMFRDSHALKEHMVKHTGVRDFKCSICDKAYGRKDTLKEHLRIHANDRKFKCQYCKMAFVQKCSLKSHLYSKHGNPRLLTDSTVKLSGLEVTEMDGNDLIAPLIEDDEIDYELLLDLQGTDKNQEVIESRQDETPSPAPFCTEYIFKYESNSQSPSADHSSDQFDPESPSNAERIDELEEISSNIEYLDETEVEYRLTERIQRSKETVEHEAEIESRDVNADKPNKSSNLSDINMKTVIEDMEEYDRQVQYHHENLRTVLRCSNATTFLCRGIWYLCTLCRTKYTDPSDLKAHTLKAHKSLKSQRKLYSARKMNRYIVKLDITDLQCKLCSIEIDSLKDLMEHLNSDHGEPVHRDLPNHMIPFKFDGDVLRCTECDREFAFFKMLQCHMNDHYKNFTCEVCDTGYVSFGSLVQHMRLHADGEYKCKWCQKLFHNKHKLADHVKLVHFGHKMRNKCAYCDMKFLVFETRNKHMEEEHGLKAPVVQCQACTKTFRSTRHLTAHMKNFHLIGQKNHECSLCDRRFSAPHMLKAHMAVHSTEKEFKCIVCDKAFSRKKTLREHVRIHANDRRFKCEHCGMSFVQKCSLTGHLKNKHADKDQDKLVIQQEKCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -