Pcor002368.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- ZFY
- Assembly
- GCA_949127965.1
- Location
- OX421851.1:3582058-3592328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0076 0.49 11.6 0.7 1 23 407 429 407 429 0.97 2 17 0.0068 0.44 11.7 0.1 5 19 440 454 436 456 0.89 3 17 3.1e-05 0.002 19.1 1.0 2 23 468 489 467 489 0.97 4 17 0.00039 0.025 15.7 0.1 3 23 497 517 496 517 0.97 5 17 1.5 99 4.3 6.8 1 23 525 548 525 548 0.86 6 17 5.6e-07 3.7e-05 24.6 2.6 1 23 553 575 553 575 0.98 7 17 0.00012 0.008 17.2 1.4 1 23 582 604 582 604 0.98 8 17 0.04 2.6 9.3 0.5 1 13 610 622 610 624 0.87 9 17 0.00031 0.02 16.0 1.2 1 23 648 670 648 670 0.98 10 17 0.0007 0.045 14.9 0.9 3 23 679 700 677 700 0.89 11 17 0.00095 0.061 14.4 3.8 2 23 709 730 708 730 0.97 12 17 0.00043 0.028 15.5 0.3 2 23 737 758 736 758 0.96 13 17 0.17 11 7.4 6.0 1 23 766 789 766 789 0.94 14 17 1.4e-06 9.1e-05 23.3 1.3 1 23 794 816 794 816 0.95 15 17 0.00064 0.041 15.0 0.1 1 23 823 845 823 845 0.99 16 17 0.00011 0.007 17.4 0.5 1 23 851 873 851 873 0.95 17 17 2.4e-05 0.0016 19.4 2.5 1 23 879 901 879 901 0.98
Sequence Information
- Coding Sequence
- ATGAGAACGGagAAGAAACCAAAGGTAACAGACGCGCAAATTGACGTACTATGCACATTCTTTGAAGAAAATCCTGAGGTTCTGGTTGGATGtaataaaaatccgaaaagcttAAAAGCAGTGTTTGCAAAGTGGCAGAAGGTCACGCCTTATTTAAATTCCCTTGGAGTTCAGAAAATAGCTAGTGAGTGGACTAAGTACTTGCGTAGTCATAGAGCCAAGCTGAAACTAAAACGGTTTAAATGGAAACAGAAACAAGACGGCAGTGGACCAATGATATGCAATGCTGACGACTTCAGTGAAATTGGGTTCAGGATGCTTCAGGTTTTTAGAAGAAATGTTAACACGCCACAAGATTTACAGaatTCGAATACTTCATTTAATGGCTCTGAAGATAATGTTAAAGCTGAACATAGCAATGAACTGGAGAAGATCATAATTAAACAGGAACCAAATAAAGACTGCGATTCAAATGATGTtggagaaaatgaaaaaaatcaagCTATACCCATGGCTACACGAACATTTTTAAAGCCCGATGAAGAAACTTCACAAGTATTTGTAAATACAAACGAGATAGGGGACGACTTTGATACGTTCGCAAGGAATATGGCCCAGCAATTGAGAGCATTACCAATGGATATTGCTTTGGAAACACAAGAAATGATGTGGGCGATTTTGTTTAAACAACGTCTAAAAAAagtttttattcaaacaaatatGGACAACTTATCAAATAGCTGCCGTGCGTGCCTAATTACTTCTGAAACTTTCTCATACTTTCTGGACGAACATAAAAATCTGGAAATGTTTTGGTTTTGCACATCTATCGAGATAAAGCAAGACGAACTCCCAAAATCCCTGTGCGACCGCTGTTATAGTCTCCTTACTAAGTTCTCGGagttcaaaaagacatgtatccAGTCTGAAAACATTTTACAAGACCTAGCCCTTGGTTTGTCTAAGAGTATAAAATCGGAAGATGTGGACGTAAACCGCGTGGAGTTTAAAACTGAATTAGAAAGAAATACAGAAGAAAAACAAGAGAATTTCAAGGTGAAAGCAGAAGAATTCGTTGATGCTGATGTTTTGGGAGTAGATTTTGATGATGATATACCTTATGATGATGCCTCCATCGACAGagttaagaaaaagaaaataaaaaagagattTACAAAAACTGTTCCAAAACCTTGCCAGTTAAAAAGACGATTCAATTTCTCATGcgaagtttgtaataaaaagtttGGGTTCAGAGAACGGTTTGACGCGCACATGTTGGAGCATCAAGGGAAATCAACTGCAATATATTGTGTGCCGTGCAACAAAACCTTTACGACCTGGGGAGGCCTGAAACGACACAACGACTGCGAACACACTCGCCTCACCACAGACCAGCTCACTTGCAAATTGTGCTCCAAAGTTTTCAAGAGCCCTAGAACTTTGAAGATACACTACGCCACGCACGGTGATAGGAAGCTGAAAATATGTGACGTGTGCGGGAAGGGATTTAAAAGCGATTTAACGTTAAAGGCTCATTTAGAGACGCACATAGAGAACCGCGAGCGCCGCTACACCTGCCAGCATTGTGGAAAAAAATACTTCAGCAAGAAAACGTGCGCCTCACACGCGTCGCGCCGACACTCCGACAAGCGTTATATCTGCCACCACTGCAACTACCCATTCACAGATAAGAGCAACCTCGCGAAACATATACTAATACACGAAGGCAAACAACAGCTGCACAAATGCGACTTGTGTTTAAAAACTTACTCGTCCCAATCTGCTTTAGTTATTCATAAGCGGGTTCACACAGGAGAGCGACCGTTTCTCTGTAATTATTGCCCGAAGAGTTTCTCTAATCGGAGGATGGGAACAgcaagtaaaacaaaacaaaagagtcCAAAACGCGCAAAGCCAAGGCAGAAGAGACCGTTTAACTTCTCCTGTGAGCTGTGCGGCAAGAAGTTCGTGTTTAGAGAACGATTTGAGGCCCACCAGCTAAAGCATGAGGGGAAAACAacaCAAATACACTGCAAACCGTGCGACAAAACCTTTGTGACGTGGAGTGGACTACGGCGGCACAACGAATCGGACCACTCCACGCACAGTTTCAAAGACCTGACGTGCAAGGTCTGCTCCAAGGTCTGCAAGACACCATTAACATTGAAGACTCACTACAAGACCCACGGAAAACGGAAGGTGCTGATATGTGATGAATGCGGGAGAGAGTTTAAGAGCGATCTAACTTTAAAGAACCACCTAGAAACGCACATAAAGAACCGCCAACGCAGTTTCGCTTGCCAACACTGCGGGAAGAAGTATGTTAGCAAAAAAACTTGCGCCAAACACATATACCGCAGGCACACCGACAGGCGCTTCTTATGCCACTACTGCAATTACCCGTTTGCAGACAAAAGCAACCTCGTCAAACACATAATGATGCACGAAGGCAAGCAACGGCTGTACAAATGTGACTTGTGCCTTAGAACACTGACATCCCCTGCTTCATTAGTTGTCCATAGAAGAATACATTCCGGCGAGAGACCGTTCTTATGCAGCTTTTGCCCGAAGAGATTCTCTAATAAGGGCGTGTTGGTGGAGCATCAGAGGATACATACGGGCGAGAGGCCTCATAAATGCGTGGTGTGTGAACAGAGCTTTACCCAGCGCGGGTCTATGAAGAGACATATGAAGGTGCATGATAGACTCGCCGCGTAA
- Protein Sequence
- MRTEKKPKVTDAQIDVLCTFFEENPEVLVGCNKNPKSLKAVFAKWQKVTPYLNSLGVQKIASEWTKYLRSHRAKLKLKRFKWKQKQDGSGPMICNADDFSEIGFRMLQVFRRNVNTPQDLQNSNTSFNGSEDNVKAEHSNELEKIIIKQEPNKDCDSNDVGENEKNQAIPMATRTFLKPDEETSQVFVNTNEIGDDFDTFARNMAQQLRALPMDIALETQEMMWAILFKQRLKKVFIQTNMDNLSNSCRACLITSETFSYFLDEHKNLEMFWFCTSIEIKQDELPKSLCDRCYSLLTKFSEFKKTCIQSENILQDLALGLSKSIKSEDVDVNRVEFKTELERNTEEKQENFKVKAEEFVDADVLGVDFDDDIPYDDASIDRVKKKKIKKRFTKTVPKPCQLKRRFNFSCEVCNKKFGFRERFDAHMLEHQGKSTAIYCVPCNKTFTTWGGLKRHNDCEHTRLTTDQLTCKLCSKVFKSPRTLKIHYATHGDRKLKICDVCGKGFKSDLTLKAHLETHIENRERRYTCQHCGKKYFSKKTCASHASRRHSDKRYICHHCNYPFTDKSNLAKHILIHEGKQQLHKCDLCLKTYSSQSALVIHKRVHTGERPFLCNYCPKSFSNRRMGTASKTKQKSPKRAKPRQKRPFNFSCELCGKKFVFRERFEAHQLKHEGKTTQIHCKPCDKTFVTWSGLRRHNESDHSTHSFKDLTCKVCSKVCKTPLTLKTHYKTHGKRKVLICDECGREFKSDLTLKNHLETHIKNRQRSFACQHCGKKYVSKKTCAKHIYRRHTDRRFLCHYCNYPFADKSNLVKHIMMHEGKQRLYKCDLCLRTLTSPASLVVHRRIHSGERPFLCSFCPKRFSNKGVLVEHQRIHTGERPHKCVVCEQSFTQRGSMKRHMKVHDRLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -