Pcor022995.2
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:3120761-3127612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 8.5 5.5e+02 2.0 1.7 1 23 42 64 42 64 0.95 2 28 0.47 30 6.0 0.4 2 23 139 161 139 161 0.95 3 28 0.0015 0.099 13.8 1.0 1 23 166 189 166 189 0.94 4 28 0.0089 0.58 11.4 1.0 1 23 194 217 194 217 0.97 5 28 0.31 20 6.5 0.3 2 23 223 245 222 245 0.90 6 28 0.001 0.066 14.3 0.6 2 23 253 275 252 275 0.96 7 28 0.0043 0.28 12.4 2.8 1 23 281 303 281 303 0.97 8 28 0.31 20 6.5 0.0 1 23 355 378 355 378 0.90 9 28 0.063 4.1 8.7 2.6 2 23 454 475 453 476 0.94 10 28 2.2 1.5e+02 3.8 4.5 1 23 481 504 481 504 0.92 11 28 1.1 73 4.8 0.2 1 23 509 532 509 532 0.93 12 28 0.0086 0.56 11.4 1.7 2 23 538 560 537 560 0.96 13 28 0.11 7.1 7.9 0.2 2 13 568 579 567 581 0.84 14 28 0.00024 0.016 16.3 2.6 1 23 722 745 722 745 0.95 15 28 4.9e-05 0.0032 18.5 1.7 1 23 750 773 750 773 0.93 16 28 0.6 39 5.6 2.5 1 23 778 801 778 801 0.90 17 28 3e-05 0.0019 19.2 1.4 3 23 808 829 807 829 0.96 18 28 1.3e-05 0.00087 20.3 1.6 1 23 836 859 836 859 0.98 19 28 0.071 4.6 8.5 0.3 1 23 913 936 913 936 0.96 20 28 0.014 0.91 10.8 0.0 2 23 967 989 966 989 0.94 21 28 0.035 2.3 9.5 2.7 2 23 1012 1033 1012 1034 0.95 22 28 0.0043 0.28 12.4 3.3 1 23 1039 1062 1039 1062 0.96 23 28 0.1 6.8 8.0 0.6 1 23 1065 1088 1065 1088 0.94 24 28 0.0092 0.6 11.3 0.3 2 23 1094 1116 1093 1116 0.91 25 28 0.00067 0.044 14.9 0.6 2 23 1124 1146 1123 1146 0.97 26 28 0.0025 0.16 13.1 0.1 2 23 1153 1174 1152 1174 0.97 27 28 1.2e-05 0.00079 20.4 1.1 1 23 1180 1202 1180 1202 0.90 28 28 7.4e-05 0.0048 17.9 4.2 1 23 1208 1231 1208 1232 0.97
Sequence Information
- Coding Sequence
- ATGAAATCAGAACGGGACGGTACCCTAAAGGAAATGCGATGGCAACACGAGATGAAACGAAGAAACATAGAGTCCGTATTGTTGTACAGTAATGCTACCCCCTTTATTTGGCACCGTGGGAAGCATAGGTGCTTCCTCTGCCAGATCGTGCACAAACAACCGAGTCAGGTCCTAGCTCACTACGAGGAGCACGACTGCGTTGACTTACCTCTAGCTATTATGCGGTACACACAGAAGCGAGGCAATAAGGAAGCCGCAATCAAAGTAGAAATAACTGATTTATACTGCAAGCTTTGCTCTGAAAACATGGTGGACGTGAACGAACTCATCCAACACCTAATTGACAACCATGACGTGGACTATGATCTAAGTATCCCGAACTGCTTCCTTCCTTTTCGACTGATAGGCGCTCCAACTTGTGGCACTTGCAATATGGAGTTCGATCTGTTCGAATACCTCCTCCGCCATGCCAACAAGCAACACCTCAAGCACAGTTTCATGTGCGAAATATGCGGGAAGAGTTTCTTTTCTGAACGCTACTACGCCTTGCACTTGAGCAATTTCCATAGGGAAGGAGGCTACCGATGCGAATACTGCGACCTGCAATTCTCTTCGCTGCGTAAAAAATCGGTTCACATACAAAGCGTTCATGAGGAGAACCAATTGAAATGCTCCATCTGCGATGAGAAGTTAAAGAGTCAATATTTCAAGAACGTGCATCTAGCAGAAGTTCACGGGGTCGAAGAGAGGAGGATCAAGTGCCCGCACTGTCCCAGGGTGTTCCCTCAGAATAATATAATGGTGCGTCACATGAAGCGCGTCCATTTGAAAATCAAGGAACATGTGTGCTCGGTGTGTGGGGAACAATTCTTTGAGAGTTACCAGCTGAAGCTTCATTTAATGCATCACTCGGGAGAAAAGAATTTCAGCTATAACGCTCCTAAGGATAGGGGGCGCAAGAAAACCGCAGTGCACCGCCATAAGCTGAGATTGATTCGACGGAACGTTCGTATCATTCTAGAATACGGCAACGTCACGCCGTTCATGTGGGCGCGTTCAACTTACCTCTGCTTCTATTGTAAATTACCAATCGTGGACCCAGACGAGTTGCGCAACCATGTTGCCGAAATGCATCAGTTCATAGACCTTGATAACGTCCTCTGTGAACGCATCTTGAACGCCTGGGACTGCGAAGTCCCTGTCAAACTAGACGTAAAAGATATCTCCTGCAAGCTCTGCATCATGCCTATTGCTGACCTAGCTGACCTCATCGACCACCTTAATGAAGAACACAAAGCGACTTACGACACCTCTATACAAGACTGCTTGTTTGCCTTCGAGCTAGGAAAAGAGAAACTCAAATGCTCGTCTTGTGATTTGCAATTCAACTATTTCGAGTACCTTCTCCGTCACGCGAACAAGCATCACATGAGCCATGATTTCGTCTGCATGGTGTGCTGTAAGTCTTTCCACAGAAAAGTAGCGTTGATGACACATTTCAACGACTACCATAAGGAAGGGGGCTACCCTTGCGAGATATGTGGAGTGCTCTACGATTCGGCGCCAAAACGGTACAACCACaagaaaacaatgcatttgatCGACCATTTAAAATGTCCGCAGTGCGACGAAGTTTGCAAAAGCAAGTATTATAAGAAACTGCATTTGGCTACGGTTCATGGAGTCGAAGAGTGCAGAAGCGAATGCCCTCACTGTGGCAAAATGTTTCCTGAGAAAGGTGAACCTAAGGATAGGAAGCACAGGAAAACCGCCCACGACCGTCGCAAGCTGGGCTTGATAAGAAGAAATATTAGCATCATTCTACAATACGGCAACGTAATGCCTTTCATGTGGTCGCGTTTTCACACATACGTCTGTTTCTATTGCAAAGCACTCGCCATGAGCACGGAAGCTTTACGCGACCATGTTTCTGAGATGCACCAGTTCGTAGACCTTGATACTGTCCTCATCGAGCGCATTTCACAACCTTACGATTGTGAGCTACCCGTCAAACTAGACGTTAAAGATATCTCTTGCAAACTCTGTGTTACTACCATCTCTGGTATCCCTGACTTGATTAACCATCTTAACGAGGTCCACCAAGCAGGCTACGATGCATCTATAAAGGACATCATTTTCTCCTTTGAGCTAGGCAAAGACAAGCACAAATGTCCGACCTGCGGCTTAACATTCAACCATCTTGAGTCCCTCCTCCGTCATGCGCTCAAACAACACGTAGATCAGAATTATGAATGCACCGTTTGCGGGAAGTCTTTCCACCGAAAAGCGTCTCTAGTGGCGCATTTTAAAGATTATCACAAAGAAGGAGGGTATCGTTGTGATATATGCGGTTCCATGTTCAAATCTGTCCCAAGACGGTATCATCATAAGAAAACTGTCCACTTAACTAACGAGCGGGCCTGTCCGGAATGCAATAAAGTGTGCAGAAGCAAATATTATTTGAGAAGACACTTGGAATCGGTACATGGTGTTGAGGAGTGCACTTACAAATGTAGCTTTTGCGGGAAGACCTTCAATTTGAAGAGTAACATGTCTGTTCACGTCCGGCGTGTACATGAAAAAGAgaaaaacgtggcctgtgGTGCAAAAGTCAGTACATTGGAGGATAAACATAAGAAACTGGAACTCAAACGTAAGCAATTGATAAAACGTCGCAATGTCGAATATGTGCTTCAGTACGGCAACGTGACTCCTTTCCTGTGGTTCAAAGGGAAATATAGGTGCTTCTACTGCACCGAACCCATGAAAAACCCGGAGATGTTACGCGAACACACCGCCAAAGTCCACCAGTTTGCAAACCTCGAGCTCGCTGTGTTCGACAGAACGAAAGACAACCGGAACAAAGACGCCGCCATCAAAATTGACGTCACCGGCATCTCTTGTAAACTATGCCCTAAAGCTGTACCCGATCTAGAACAGCTGATAACACACCTTATTATAGCACACGACGCAGAATACGACGTCAACGTCTCCAACTGCCTCTTACCCTTCCAATTAGACAAGGACAACCCGACTTGCCCCACCTGCAAAATGAAGTTTGTCTTTTTCGAATACCTCCTACGCCACGCCAATAAACACCATTTGGCACACGAGTATATATGCGACGTGTGTGGCACCAGCTTCCAAGGAGAGAACCATTTGAAGATGCACCACAGGTACTACCACAGGGAGTACAAGTGCGACTACTGCGATGTTAGGTTAACGACGCTGTCCAAAAAGATAATCCACGAAAAGAATGTCCACATGGCCAACTTGCTGAAATGCCCCAACTGTCCCGAGACTTTCAAAAGTCCTTACTTCAAAAAACTCCATCTGGCAAACGTGCATGGAGTCGaagaattaaaaatcaagtGCCAGTATTGCACTAAAGTGTTCCCGCAAGAAAGTATCATGTCTCGGCACATGCGGAGGGTCCATTTGAGAGAGCGAAACGTCGAATGCGAAGTGTGCGGAGAGAAGTTCTTCGGGCCTTACGACGTGAAGTTACACATGCTGAAGCATAGCGGCGAGAAATCTTTTATCTGCTCCGTATGCGGAAAGAAATTCTCTAAAAAGAGCAATTTGAATTCCCACTCAGTTTTACACACGGGCAAGAAAGCTTATAGTTGCACGATTTGCAATAAGGCCTTTGCGTATCACACCAATTTGTCTATGCATATGAAGAGTATGCACCACGGATACATCAAGGTAGACAAACCACAAGAGATAGGTGAAATAGAAGTCGTCCAGATGGAGTTCATAAACGACGAATTAGAAGGAGCAGAAGTGGCCGGCCAATACATCGTCCAGGAGACTATCCAAACCTTGtaa
- Protein Sequence
- MKSERDGTLKEMRWQHEMKRRNIESVLLYSNATPFIWHRGKHRCFLCQIVHKQPSQVLAHYEEHDCVDLPLAIMRYTQKRGNKEAAIKVEITDLYCKLCSENMVDVNELIQHLIDNHDVDYDLSIPNCFLPFRLIGAPTCGTCNMEFDLFEYLLRHANKQHLKHSFMCEICGKSFFSERYYALHLSNFHREGGYRCEYCDLQFSSLRKKSVHIQSVHEENQLKCSICDEKLKSQYFKNVHLAEVHGVEERRIKCPHCPRVFPQNNIMVRHMKRVHLKIKEHVCSVCGEQFFESYQLKLHLMHHSGEKNFSYNAPKDRGRKKTAVHRHKLRLIRRNVRIILEYGNVTPFMWARSTYLCFYCKLPIVDPDELRNHVAEMHQFIDLDNVLCERILNAWDCEVPVKLDVKDISCKLCIMPIADLADLIDHLNEEHKATYDTSIQDCLFAFELGKEKLKCSSCDLQFNYFEYLLRHANKHHMSHDFVCMVCCKSFHRKVALMTHFNDYHKEGGYPCEICGVLYDSAPKRYNHKKTMHLIDHLKCPQCDEVCKSKYYKKLHLATVHGVEECRSECPHCGKMFPEKGEPKDRKHRKTAHDRRKLGLIRRNISIILQYGNVMPFMWSRFHTYVCFYCKALAMSTEALRDHVSEMHQFVDLDTVLIERISQPYDCELPVKLDVKDISCKLCVTTISGIPDLINHLNEVHQAGYDASIKDIIFSFELGKDKHKCPTCGLTFNHLESLLRHALKQHVDQNYECTVCGKSFHRKASLVAHFKDYHKEGGYRCDICGSMFKSVPRRYHHKKTVHLTNERACPECNKVCRSKYYLRRHLESVHGVEECTYKCSFCGKTFNLKSNMSVHVRRVHEKEKNVACGAKVSTLEDKHKKLELKRKQLIKRRNVEYVLQYGNVTPFLWFKGKYRCFYCTEPMKNPEMLREHTAKVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCPKAVPDLEQLITHLIIAHDAEYDVNVSNCLLPFQLDKDNPTCPTCKMKFVFFEYLLRHANKHHLAHEYICDVCGTSFQGENHLKMHHRYYHREYKCDYCDVRLTTLSKKIIHEKNVHMANLLKCPNCPETFKSPYFKKLHLANVHGVEELKIKCQYCTKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKSFICSVCGKKFSKKSNLNSHSVLHTGKKAYSCTICNKAFAYHTNLSMHMKSMHHGYIKVDKPQEIGEIEVVQMEFINDELEGAEVAGQYIVQETIQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -