Pcor025777.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421879.1:7249372-7252016[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.4e-05 0.0022 19.0 0.2 2 23 101 122 100 122 0.97 2 17 0.00013 0.0082 17.2 4.9 1 23 139 161 139 161 0.98 3 17 1.2e-05 0.00081 20.4 0.2 1 23 185 207 185 207 0.98 4 17 0.00041 0.027 15.6 0.2 2 23 214 235 213 235 0.96 5 17 0.91 59 5.0 0.4 1 19 301 319 301 322 0.85 6 17 0.0018 0.12 13.6 6.1 1 23 328 350 328 350 0.98 7 17 5e-05 0.0033 18.4 0.9 1 23 356 378 356 378 0.96 8 17 0.0028 0.18 12.9 5.1 2 23 384 405 384 405 0.97 9 17 0.00013 0.0085 17.1 0.5 1 23 414 436 414 436 0.98 10 17 0.023 1.5 10.1 0.8 1 23 442 464 442 464 0.97 11 17 0.00063 0.041 15.0 4.3 1 23 470 492 470 492 0.96 12 17 0.00072 0.046 14.8 4.9 1 23 498 520 498 520 0.98 13 17 5.8e-07 3.8e-05 24.5 0.8 1 23 526 548 526 548 0.97 14 17 1.6e-05 0.001 20.0 2.4 1 23 554 576 554 576 0.98 15 17 3.5e-05 0.0023 18.9 0.5 1 23 582 604 582 604 0.98 16 17 0.00063 0.041 15.0 0.9 1 23 610 632 610 632 0.97 17 17 0.00032 0.021 15.9 2.5 1 23 638 660 638 660 0.98
Sequence Information
- Coding Sequence
- ATGTCGGACGGAGCGCCGGGAGGCTCGGGGGTGCCGTGGGCCTACCGAGGAGGCCCAAGACGACTGCTCAAGCAGGAGAGCACGGCCGCGCAGGACAGAATGTGCGCCGAGGACGCCGACTTCGCGCTGCCAGGACCATCTGCGTCTACGAGTGATGTTATCGATCAGACCGAGATGGAAGAAATGCTGGTATACTTAGTGTTCGCTACTTACACCAGCCATGAAGACTCTCGCCAGATCTCCAGCCTTACCTTGAAGCCTTGCTATGTTAAACGAAAACGGGAGAATAAGCCCAAGATCAAATGTCCAATATGCAATAAGGTGCTTCGCTACAGACGAGGTCTTACTGTTCATATCCTCACCCACACTCAGAAGGAAATCGATACCGTCAAAATCGACAAGAAAGAAGGTCAATTCAAATGCCACCTTTGCGACCACAGAGTCGCCCGGAAAAGTAACTTAGTCAAACATCTTAAAAATCACCCAAAACTAGATCCATTTGAGATGCAATTGCGCGAAAAGATGCCGAAAGGTAAGCTGGTAAAACGGTGGTACGAATGTGATGTGTGTGGGAAGCAGACAGCGAGGAAGGACAGCTTGCTGAAGCACTTAGCCAGGCACGAAACACAGGAGCTTTTGTATTGTGCTATCTGCAATGAACCATTCAAACATGCATGGGAACTCATGGATCACCTGAAGCTTCACGAGACAGTGAGAAAGACGATCTCTGATGAAACTGCATTCGAAGACTCACACGCCAACTCCGCTAGGcacgaaaataataaaaatgagacTGGTGTTAAGACTTTGAAAAATGAAGTAGTCGTTATAAGTAGTGACAATGATACGAGTGATGATGAGTTTGATGAAGAGCCTGTGCTAGTGATTGATGAAGAAACATACAACTGTGGGATCTGTGAGGAACGATTTGATACTATCTCCTCGCGAGATACACATGTATGCGAGCGGCCGAAGAAAcctttttcttgcgacatttgCAAGAAGAAATTCAAGCACCAGTGCCTCTTAGACGTGCATTTCCGTGTTCACACAGGCCAGAAACCTTTTTCTTGTAATGTTTGCCAAAAACAATTTAGAGTAAAGGGCGACTTGACAAGACATAAGGTGGTTCACACAGATCAGAAACCGACATGCGATATATGCCAGAAACAGTTTCATTCTAATCACGCTTTAAAGAAGCACAAACTGGTACACACGGGTCAGAAAACAAAAAAGCCATATTCATGCAAAATGTGCAAGAACAAATATAGGACACCGGGGGAATTAGAAATGCACATTCGCGGTCACACGGGAGACAAACTTTTCACCTGCGACGTGTGCAAGAAACAGTTCCTACGGAAGAGTATTTTAGTTGTACATTTACAATCGCACACCGACATCAAACCGTATTCGTGCCATGTGTGTAAGAAAAGTTTCCGCAGCACCAATAAATTAAAAGAACACAGCAGCATCCACACCGGAGAGAAACGGCACACTTGTCAAATTTGCAAGAAACAGTTCCGTCTGAGTACAATGCTTAAGAACCATAAACGCATCCACACAGGCGAGAAACCGTTCGCGTGCGAATTCTGTCCGAAAATGTTCAGACAGCAGGCTAATTTATGGTCTCATCGCCGAACGCACACCAATGAAAAACCTTTCAGTTGCACGGTGTGTGAGAAACGCTTTTCAAATAGATATAAACTGAAAGTACACAACCGAGTCCACACCAAAGAGAAATCTTACGTTTGTGATGTTTGCAACAAAGCCTTCGGCTATAGCTCTACGCTGTATATGCATAAACGCATTCACGAAGGCGACAAAAAGTTCGCCTGCAAGGTGTGTAATGCGCGGTTTCTGCGGAAGAACTATTTAGAGGATCACATGCGGAGCCACACGAGGGAATGGCCGTTCGAATGCCAAGTCTGCCAGCGCAGGTTCCAGCGCCGCGAGTACCTCAGGCTACACAAGAAGGTGCATACAAGACACAAAACATAA
- Protein Sequence
- MSDGAPGGSGVPWAYRGGPRRLLKQESTAAQDRMCAEDADFALPGPSASTSDVIDQTEMEEMLVYLVFATYTSHEDSRQISSLTLKPCYVKRKRENKPKIKCPICNKVLRYRRGLTVHILTHTQKEIDTVKIDKKEGQFKCHLCDHRVARKSNLVKHLKNHPKLDPFEMQLREKMPKGKLVKRWYECDVCGKQTARKDSLLKHLARHETQELLYCAICNEPFKHAWELMDHLKLHETVRKTISDETAFEDSHANSARHENNKNETGVKTLKNEVVVISSDNDTSDDEFDEEPVLVIDEETYNCGICEERFDTISSRDTHVCERPKKPFSCDICKKKFKHQCLLDVHFRVHTGQKPFSCNVCQKQFRVKGDLTRHKVVHTDQKPTCDICQKQFHSNHALKKHKLVHTGQKTKKPYSCKMCKNKYRTPGELEMHIRGHTGDKLFTCDVCKKQFLRKSILVVHLQSHTDIKPYSCHVCKKSFRSTNKLKEHSSIHTGEKRHTCQICKKQFRLSTMLKNHKRIHTGEKPFACEFCPKMFRQQANLWSHRRTHTNEKPFSCTVCEKRFSNRYKLKVHNRVHTKEKSYVCDVCNKAFGYSSTLYMHKRIHEGDKKFACKVCNARFLRKNYLEDHMRSHTREWPFECQVCQRRFQRREYLRLHKKVHTRHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135014;
- 90% Identity
- iTF_01135014;
- 80% Identity
- -