Pcor022986.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:3051695-3057991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.015 1 10.6 0.4 1 23 28 51 28 51 0.95 2 27 0.15 9.9 7.5 2.9 2 23 123 144 122 144 0.97 3 27 0.0018 0.12 13.5 0.5 1 23 148 170 148 170 0.97 4 27 0.017 1.1 10.5 0.7 1 23 177 200 177 200 0.97 5 27 0.0031 0.2 12.8 1.3 2 23 208 230 207 230 0.95 6 27 2.7e-06 0.00018 22.4 0.9 2 23 236 258 235 258 0.97 7 27 2.6 1.7e+02 3.6 1.0 1 23 264 287 264 287 0.89 8 27 2.2e-05 0.0014 19.6 1.6 1 23 293 316 293 316 0.98 9 27 2.7 1.8e+02 3.5 0.1 3 23 404 425 402 425 0.92 10 27 0.48 31 5.9 0.1 2 23 452 474 451 474 0.95 11 27 0.37 24 6.3 1.8 2 23 497 518 496 518 0.93 12 27 0.51 33 5.8 1.7 1 23 522 544 522 544 0.95 13 27 0.03 2 9.7 0.7 1 23 549 572 549 572 0.91 14 27 0.019 1.2 10.4 1.5 2 23 580 602 579 602 0.96 15 27 0.00026 0.017 16.2 0.9 2 23 610 632 609 632 0.96 16 27 0.00047 0.03 15.4 3.4 1 23 638 660 638 660 0.97 17 27 2.2e-06 0.00014 22.7 1.0 1 23 666 688 666 688 0.99 18 27 5.9e-06 0.00038 21.4 4.0 1 23 694 717 694 717 0.98 19 27 0.33 22 6.4 2.0 1 22 872 893 872 895 0.90 20 27 1.8 1.2e+02 4.1 0.1 2 23 924 946 923 946 0.92 21 27 0.012 0.75 11.0 1.5 2 23 995 1016 994 1016 0.96 22 27 0.015 1 10.6 1.7 1 23 1021 1044 1021 1044 0.96 23 27 0.34 22 6.4 0.5 2 23 1051 1073 1051 1073 0.94 24 27 0.00038 0.024 15.7 0.5 2 23 1081 1103 1081 1103 0.97 25 27 2.8e-05 0.0018 19.2 1.2 1 23 1109 1131 1109 1131 0.98 26 27 0.00059 0.038 15.1 1.4 1 23 1137 1159 1137 1159 0.98 27 27 5.2e-06 0.00033 21.6 5.8 2 23 1166 1188 1165 1188 0.96
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAACCTGACGACCTTGCTCAAGTACTCGAACGCCACCCCGTTTAAGGACAGGAACGACGCGGGCTACATTTGCGCGTACTGTTTCAAAGCTTACCCCGACCCGGAGGTCTTGCGACAGCACACGCAGCACGATCACATTAAAGAGAAACCCACATACAAAGCTGGTTCAGGCATGAGCAGCTTCGTTGCCTTCCTTGACATCGTCAACCTCAAATGCAACCTCTGCGACACACCAATAGATAACCTCAAAGATCTACCCGAGCATCTAGTCAAAGTGCACGACAAGAAATATTATCTAGACGTCACGGATTACTTCCAACCGTTCAAACTGGCCAACGAGCAGCAGATCAAATGCTGTCTCTGCAGCGAGGCGTATCACAACATGAAACTTCTGATGCAGCACATGAATGTTCATTACAGGAACTTTATATGCACTACTTGCGGAGCTGGGTTCGTGAACAGCTTTAGACTCAACAGGCATGAGACTACGCATGGGAAGAAGAAGTCCAGCTTCCCGTGCCGTCACTGCGATCAGGTCTTCGCAGCGGAGTCTAAGAAGAAGGCACACGTCAATACAGAACACAAAGGCATAGCGGGAGACAGTGTCTGCCAAATTTGCAAGGCGCGCTTCAAGAATTACTACCAGAAAACGAGACATATGATGCAAGTGCACAACGTTGAGGGGATCAAGTGTGACATGTGTGACAAAAAGTTCAATTTGAAGTCGAATCTGATGTTGCATATGAGGAGTGTGCATCTAAAAGAACGCCCGTACGAGTGCTCGGTCTGTAGCATGGGGTTCTTCATTAAAAGGCATATGTTAGGGCATTATATGGCGACGCATACGAACGAGAGAAAATTTAAGTGTGACGTATGCGGCAAAGCGTACGCCACGCAGAATAGTAGACgcaaacacatgaaaaagaatCATGGTATCGCGCGCCAAGCGATAATAGATAAACAAGTAAGTAGAGTAAAGCGCAGAACAGACGCGGTCAAGACAGAACTTGATTGGTCAGTCACAGTAAGGAAGGCTGGCTCGCGAACTAGCCTGAGAAACCTACGCGCTGTCCACATTAAACGGGAAGCAACGGACACCAAAGAGATCCATAAGCATTTACAAAACATTAGAACTGTTCTACTTTATACTAATGCTACTCCGATACGTTGCCACACCGGCCTAGGTTACGGCTGTGCGTTCTGCTCTGCCAACTTTATAATTCCCGGCGATTTAAAACAGCACACTTTGGAACAGCACGACGATACACAGATCAGTAATTTCATGAAAGGTGTCCCTCTAACTGGGTTCGCACCTAAACTGGACATAACAACGCTTCATTGCGAGCTATGCGATACAGAAATCGTTGAATTGGAACAACTCCTTGTACACCTCAAGACCGAGCATAATAAAGATGTCCACACGGACGTGAACAACCACATAATACCTTTCAAATTCGACAGCGAAATACTTAAATGCGCGATTTGCGAGAAGGAATTCCAATATTTTAAACACATATTGGAACACATGAGCTTTCACTACAGGAATTATTTGTGCACTATCTGTAATGCACCGTTTACGTGCATCAAAGGGCTTAAAACTCACCAGAGTCGGCACAAACGGGGAGAGTTTCCCTGTAGCATATGCTCAAAAATCTTCGACACGAAAGCCAAACGGAATGACCACGAGAAGTTTGTGCACGTAGGTGATCATAAGAGGAGTAAATGTCCGTACTGTTCAGAGAAATTTGCGCGCCATGCGAAGAAAATGGAGCATATGGCGAAGGAACATGGGGAGAAGCCATTGGAGCTGAAGTGTAATGCTTGCCCGCTAACTTTCAAGAGTCGAGACGGTCTAACGAGGCACACGAAGCGCGACCATCTCATGGAGAGGCGGCACCAATGCCAGCTGTGCGATATGAAATTCTATGGCAAATCCCAGTTGAACCACCATATGATAGCGCATACGGGTGAACGCGAGTTCCGATGCGATGTTTGCCAGAAGGCGTATGCCAGGAAGAAAACTTTACGCGAACATATGAGGATACACCAAGACGACAGGAGATTTAAATGCGAGATATGTGGACAGACGTTCATTCAGAAGTGTAGTTTGAAGAGCCACATGAAATCTAAGCACTGGGACGGAGTGTGTGGTAAGGGTCTTGTGGCGACTAAAGAATTGGACCTATTCGATGAAAATGAGGCACCAAAGAAGACAGCTTCTGTTAAAGTAGTTGTTGAAGATGGGGAGCCGAAGGATATATTCAAACACCGTAACAATATTCGCGTGATTCTGGAATGTTCTAATGCGACGCCTATCCGCGACCACGGCGGGCTCGGCTATCAGTGCTGCTTCTGTTTACTGACGACAAGTGTCGTCAAAGTCGAATGGACCGAGGTGAAAGGAGACAGGAGGTTGGATAAAACATCTCGAGTCGCTAAAGAAGTTAAAGTTAAACTTCGAAAGTCTAAAGTGAACTTAAAAGACAATAATGAACAGCCGAAGGGTCCCGCCGAAATACATATGCATCGTAACAATATCAGAGTTATTCTGGAATGTACGAACGCGACGCCTATCCGCGGTCGCAGCGACGTCGGCTACCAGTGCTGCTTTTGCAAAAACGAATACCCACAGCCTGCCGATCTTAAAACTCACTCGCTCGATAAGCACCACCACGAACTCAAAACCAAAAGCGATTTTGCATGGGAAAAAAAcatggccacgtttagtgtCAAATTGGATATAACAGGGCTACGCTGTGAATTATGCGGCAGCGATGTCGACACGATAGAGTTACTTAAGAATCATTTAATAGAACGACATGGAAAGAAACTATATAATGATATCAAGAATCACATCATACCTTTTAAGTTTACCGACGAAACATTACGCTGTATCTTTTGCTCTGATGTTTCTAGCACGTTCAAAGCTTTGCTTATACACATGATGGTGCATTTCAGATATTGTATTTGCGAGCAGTGTGATAGCGGTTTCATCAACCGCAAGATGCTCAGGGACCACGCTAAAACCCACGAAACTGGCACATTTAAGTGCACATCCTGTCCCAAAGTATTTGACACCTTACGGAAACAGAAATCGCACGAACGGCAGGTCCACAGTACCAAGAAGCTGAACAGATGCGGTTATTGCTATGAGACGTTCAGGGAATACGTTCAGAAAGTGAAACACTTGAAAGAGGTGCACGGCGTGCAGACTGAGTCGCCTAAATGTAACGCTTGCGACAAGATCTTTGATAACAAGGCAGCGCTGAGAACGCACGTGAAAAGAGATCACTTGATAGAAAGATCTTACAAATGTACGCAGTGCGATATGTCTTTTTATGCGAAGTCCCAGTTGACTATCCATATGGTGAAGCATACTGGCTCGAAGGAGTTTACTTGCGAACTGTGCTGGAAGTCTTATGGGCTGCACAGCACTTTGACGGAACACATGAAGATCCACGCGAACATACGCAGGTGCAAGTGCGAACATTGCGACATGGCGTTCGTGACGAAGAGTAGCTTGCGGAAACACATGCGGTCCAAACATTCTGAACTACTCTAG
- Protein Sequence
- MQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKAYPDPEVLRQHTQHDHIKEKPTYKAGSGMSSFVAFLDIVNLKCNLCDTPIDNLKDLPEHLVKVHDKKYYLDVTDYFQPFKLANEQQIKCCLCSEAYHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCDQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGIARQAIIDKQVSRVKRRTDAVKTELDWSVTVRKAGSRTSLRNLRAVHIKREATDTKEIHKHLQNIRTVLLYTNATPIRCHTGLGYGCAFCSANFIIPGDLKQHTLEQHDDTQISNFMKGVPLTGFAPKLDITTLHCELCDTEIVELEQLLVHLKTEHNKDVHTDVNNHIIPFKFDSEILKCAICEKEFQYFKHILEHMSFHYRNYLCTICNAPFTCIKGLKTHQSRHKRGEFPCSICSKIFDTKAKRNDHEKFVHVGDHKRSKCPYCSEKFARHAKKMEHMAKEHGEKPLELKCNACPLTFKSRDGLTRHTKRDHLMERRHQCQLCDMKFYGKSQLNHHMIAHTGEREFRCDVCQKAYARKKTLREHMRIHQDDRRFKCEICGQTFIQKCSLKSHMKSKHWDGVCGKGLVATKELDLFDENEAPKKTASVKVVVEDGEPKDIFKHRNNIRVILECSNATPIRDHGGLGYQCCFCLLTTSVVKVEWTEVKGDRRLDKTSRVAKEVKVKLRKSKVNLKDNNEQPKGPAEIHMHRNNIRVILECTNATPIRGRSDVGYQCCFCKNEYPQPADLKTHSLDKHHHELKTKSDFAWEKNMATFSVKLDITGLRCELCGSDVDTIELLKNHLIERHGKKLYNDIKNHIIPFKFTDETLRCIFCSDVSSTFKALLIHMMVHFRYCICEQCDSGFINRKMLRDHAKTHETGTFKCTSCPKVFDTLRKQKSHERQVHSTKKLNRCGYCYETFREYVQKVKHLKEVHGVQTESPKCNACDKIFDNKAALRTHVKRDHLIERSYKCTQCDMSFYAKSQLTIHMVKHTGSKEFTCELCWKSYGLHSTLTEHMKIHANIRRCKCEHCDMAFVTKSSLRKHMRSKHSELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -