Pcor024818.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421878.1:725032-731904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.8e-05 0.0031 18.5 0.7 1 23 119 141 119 141 0.97 2 17 7.9e-05 0.0051 17.8 3.4 1 23 147 169 147 169 0.98 3 17 0.00013 0.0085 17.1 4.2 1 23 175 197 175 197 0.96 4 17 3.1e-05 0.002 19.1 2.3 1 23 204 226 204 226 0.98 5 17 0.00016 0.01 16.9 0.8 1 23 231 253 231 253 0.99 6 17 0.0033 0.21 12.7 2.1 1 23 259 281 259 281 0.98 7 17 0.00034 0.022 15.8 1.0 1 23 287 309 287 309 0.98 8 17 0.00028 0.018 16.1 3.6 1 23 315 337 315 337 0.96 9 17 0.0015 0.097 13.8 3.0 2 23 346 367 345 367 0.97 10 17 8.6e-07 5.6e-05 24.0 0.5 1 23 372 394 372 394 0.99 11 17 2.5e-05 0.0016 19.4 1.7 1 23 400 422 400 422 0.98 12 17 1.4e-05 0.00093 20.2 1.1 1 23 428 450 428 450 0.97 13 17 0.00033 0.022 15.9 1.1 1 23 458 480 458 480 0.96 14 17 4.7e-05 0.0031 18.5 3.7 1 23 486 508 486 508 0.98 15 17 4.6e-06 0.0003 21.7 3.3 1 23 514 536 514 536 0.98 16 17 0.00034 0.022 15.9 1.1 1 23 541 563 541 563 0.96 17 17 0.013 0.81 10.9 1.5 1 23 569 591 569 591 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTAGAATTTGTGTCTGTGAAAGAAGAACCGAAGTGGGAAAGCGAATACGGCGAAGTACCGGCTGGTGCCATCGATGTCAAAATAGATTTAAAAACATCCGAGGTCAAAGCTGAAGTAAATCCCCAGGTCGATGTGAAGATAGAAACACTGGAAGAGTCAGAAAAAGATCACGAGTTGGAGATATGTCGTAACATTAAAATTGAGGTTGAACTGGAGCCTCAGCTGCAGCCCCCGGACGCGGTCTGCTCTGATCAAGATCAATCAAATCATGAAGCCACAGAATATTTCGAAGAAGAACAGATTGAAACCACTAGTGCCCCACAGCAGACTAAACAGAGCAAAAGAAACTTCCCTTGCCCCTTGTGCAACAAACTGTATCGTAGCACAACCGATTTAAAACGACACATGCTCCTCCACTCCGGAGTGAAACCTTACAAATGCGATGTATGCCAAAAAGAATTTACGCTCAAACATTACTTAACTAAACATGCCAAAATACACCTGGATGTTAAACGGCATTGTTGCCAACTCTGCGATAAAAGATTTGCGGTCAAGGAAAGTTTAATCAAACATATGTTGAAACACACCGGAGAAATAAAACTGTATCCGTGCAAAATatgcaacaaacaattcaagGATAAGAATTACTTGGGACAGCACCAACGTTTCCACACCGGGCAGCAGTATACTTGCCAAATCTGTAATAAGGAATTCTTATTCCGAACTGGCTTAGCCAGACACATGCGGATACACTCTGGTGACAGACCGTTCTCATGCAAAATTTGCTTCAAACGGTTCAAAGCTATgccttatttaattaaacacaaGCGCCTTCACACTGAAAACAAGGATTATTCCTGTGCTGTTTGTGAAAAGAAATTCTTCTTCAAAGATAGCGTGGACAGGCATATGCGGGTCCATACCGGCGAGAAGCCTCACAGCTGCTCGGTCTGTAGCCGACAGTTCTCATTCAAGACCAGCTTGAACCGACACATGGAACTGCATACCCGAGAGAGACCGCCAACAATAACCTGCGAGACTTGCAACAAAGAGTGCACGGACGAAGCTCATCTAGAGCAACACAAACTCACCCACGTGAAACAACAGTATACTTGTCCGACGTGCAACAAAGAATTCTCTGTCAAAGCGAGCGTGGCCCGGCACATGCGGACCCACACAGACGACAAGCCCTTCACATGCCAACTTTGCTTCAAAACTTTTAAAGACAAAGCGTACTTAGAGTTACATATAAAATTGCATACCGGTGAGAAGAAACACAGCTGCAAAGTGTGCGGCAGGCAATTCGCTTTGAAAGCCAGTTTGTCCCGTCATATTCGGATACACACCGAAGGCGAGAAGAAACCTTTCGAATGCGACATTTGCCAAAAGAGGTTCCGTGTCAAAATCTACATGACCCGACACAGAGCTCTCCACACAACAGAAAGGCAGTACTCATGCGACATTTGCCATAAACAGTTCTCTTTTAAAGCTCATGTGCAGCGCCACATCCTGATACACACGGGAGAGACTCCGTATTCATGCAAGACGTGTTCCAAAGGTTTCAGAGACAGATCCAGTTTGAGGAAACATGAGCGTCGGCATACCGACAAGCCGCATGCATGCAAGATATGCAAGAAACAGTTTGCTGAAATCGAGGCTTTGGACAAGCATATGCGGAAGCATTCCGATGAGAAGCCGTTCACTTGTAACGTTTGCTGCAAGCAGTTTAAAACGAAGGCGGCGGTGGCGGGGCATCAGAGAGTGCACGCCACAGTTAAGTACCTGCCAGCGGAGTGTCAGACTAGTATAAAGATTGAGTTTGAACGAGACAGCGAGGCCTCGCTACATCAGGAAAGCAtTCAGTTCAGTGCGAAGGTGGACACGCTGGAGAGTCGCGTCGACGCCGTGGAGAAGGCTGCCGTCGATAGCACCGTGCCGGTAGCCACCAGGGTGCTGGAGGAGGCCATCGCAGCCCTCCAGGCGGAGCTGAACGAGCGGGACCAGGAGCTGTTGGCGAACGACGTGCAGCTGTCCAATGTGCCGGAGGAGTCGGGCGAGAATGCGGTCGGGCTGGTCACGCGGGTCTGCGTGAAGCTGGGCGTGGAGCTGGACGTGCGGGACGTGGTGTTCGCGCACCGCGTGGGCGGCGAGCGCGAGGAcggccggccgcgcccgctggTGGTGCGCATGACGCGCCGCGCCGTCTGCGAAGAGCTGCTGAAGCaggcgcgcgtgcgccgcggcgccaccACCGACGGCCTGGGCCTGGCCGCGGCGCCGCGACGGTTCTACGTCAACGAGCGGCTGACGGCCGCCAACCGCCAGCTGTTCCAGCGCGCCCGCGAGGCCGGGAGCGCCGCCGCCTGGCGCTGGGTGTGGACTCGGGGCGGGAGGATTTATGCCCGCAGAGCTGACGGCCAGCCGGGTCATCGCTTGCGCACCTTGGCGGATCTAGATATTTTTACTTCGGCCACCGTTGCCCTGTCCATTGTTTAG
- Protein Sequence
- MSLEFVSVKEEPKWESEYGEVPAGAIDVKIDLKTSEVKAEVNPQVDVKIETLEESEKDHELEICRNIKIEVELEPQLQPPDAVCSDQDQSNHEATEYFEEEQIETTSAPQQTKQSKRNFPCPLCNKLYRSTTDLKRHMLLHSGVKPYKCDVCQKEFTLKHYLTKHAKIHLDVKRHCCQLCDKRFAVKESLIKHMLKHTGEIKLYPCKICNKQFKDKNYLGQHQRFHTGQQYTCQICNKEFLFRTGLARHMRIHSGDRPFSCKICFKRFKAMPYLIKHKRLHTENKDYSCAVCEKKFFFKDSVDRHMRVHTGEKPHSCSVCSRQFSFKTSLNRHMELHTRERPPTITCETCNKECTDEAHLEQHKLTHVKQQYTCPTCNKEFSVKASVARHMRTHTDDKPFTCQLCFKTFKDKAYLELHIKLHTGEKKHSCKVCGRQFALKASLSRHIRIHTEGEKKPFECDICQKRFRVKIYMTRHRALHTTERQYSCDICHKQFSFKAHVQRHILIHTGETPYSCKTCSKGFRDRSSLRKHERRHTDKPHACKICKKQFAEIEALDKHMRKHSDEKPFTCNVCCKQFKTKAAVAGHQRVHATVKYLPAECQTSIKIEFERDSEASLHQESIQFSAKVDTLESRVDAVEKAAVDSTVPVATRVLEEAIAALQAELNERDQELLANDVQLSNVPEESGENAVGLVTRVCVKLGVELDVRDVVFAHRVGGEREDGRPRPLVVRMTRRAVCEELLKQARVRRGATTDGLGLAAAPRRFYVNERLTAANRQLFQRAREAGSAAAWRWVWTRGGRIYARRADGQPGHRLRTLADLDIFTSATVALSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -