Pcor008904.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421857.1:15383819-15417247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0055 0.36 12.0 0.2 1 23 131 153 131 153 0.98 2 23 0.0016 0.11 13.7 0.5 1 23 158 181 158 181 0.90 3 23 2.8e-05 0.0018 19.2 2.8 2 23 188 209 187 209 0.98 4 23 4.7e-07 3.1e-05 24.8 0.9 1 23 215 237 215 237 0.97 5 23 0.00049 0.032 15.3 3.0 1 23 243 265 243 265 0.98 6 23 1e-06 6.6e-05 23.8 0.3 1 23 271 293 271 293 0.98 7 23 3.8e-06 0.00025 22.0 0.4 1 23 299 321 299 321 0.99 8 23 0.0091 0.59 11.3 2.3 1 23 327 350 327 350 0.93 9 23 0.00087 0.057 14.5 1.2 1 23 356 379 356 379 0.95 10 23 0.00088 0.057 14.5 1.5 2 20 383 401 382 403 0.92 11 23 0.0094 0.61 11.3 3.6 1 23 410 433 410 433 0.96 12 23 0.0098 0.63 11.2 0.1 1 23 545 567 545 567 0.97 13 23 2.2e-05 0.0014 19.6 0.3 1 23 572 595 572 595 0.97 14 23 8.1e-06 0.00053 20.9 1.2 2 23 602 623 601 623 0.97 15 23 4.6e-06 0.0003 21.7 0.9 1 23 629 651 629 651 0.97 16 23 0.00013 0.0081 17.2 3.7 1 23 657 679 657 679 0.96 17 23 1.6e-06 0.0001 23.2 0.8 1 23 685 707 685 707 0.98 18 23 0.0033 0.22 12.7 4.5 1 23 713 735 713 735 0.98 19 23 0.00093 0.06 14.5 0.4 1 23 741 764 741 764 0.94 20 23 0.00052 0.034 15.2 2.8 1 23 770 793 770 793 0.97 21 23 0.04 2.6 9.3 1.2 3 20 799 816 797 818 0.92 22 23 0.0021 0.13 13.4 1.6 1 23 825 848 825 848 0.97 23 23 1.7 1.1e+02 4.2 0.9 2 21 853 872 852 873 0.91
Sequence Information
- Coding Sequence
- ATGGATgAATGGAATGTTCAAACGGACTCTAAATATTCAACTTCGAATCTGTACGACAAATGTTTGGCGCAAACAGTTCCTGTGAACAAAGATAATGAatGCTGGAAACGAATAAAACACTCGCACAGTGACACCAGCATCGAAGAATGTAGGAGCAATGACAGCGTGACTTTATTCACGCTAAAAAGGGAGAGCAAAAAAGAAAGAACAGAGTCAGAAATAAATACACAGCCGGAATACAAGCTTGTAACTATTAAACCTGAACCACAATTAAATTTCACAAGCAGTACCAACCAAAGAAACAGTAGAACGTCTAAGCTTCGTCCGGTCAAAACTCGATTAGAAGTTACGGAGCGTGATAATGGGAACACTGGTGATAGCAGCAATCAGTATTCATGTGGTCAGTGCTCCGCATCGTTCAGGACGTTAGCGGACATAAAAACCCACTTGGAAAGCCACTTGGATCCTTCTTTCGCCTGCGATAAATGCCCAGAAACGTTCATTACTCTAAGGCAACTAAGTAGGCATTCGCTGCTCAAACATCTAACCAAATGCgacataaaatgtaatatttgtcaTAAAGCATTGAAAAGCAACCGCAATTTGCGGCTTCATCTGCGAACCCATACAGGGGAGAGGCCGTTTGCTTGCAAGCAATGCGGCAAACGGTTCACGCAAAATGGTTCCCTGCAGACGCATATAAAAATTCATTTAGGTTTAAAGGAACACGTGTGCGGTTACTGCAGCAAAGCGTTCACTGAATACAAGAACATGAAGAACCACGAAAGAACGCATACCAAAGAACGCCCTTTCGAATGTCGCCTTTGTGGGAAGAGGTTCGGGGACTCATCAGCTTTGATAAGACACGTACGCACCCATACAGGGAACAAAATATATCAATGCTCACTATGTCCTATGAAGTTTAGTGATCCAAGCGGTCTCACCGCTCACAAGAGACGTCATGACGGCGTCAAAAGTTACTCCTGTGATTTCTGCGACAAGAAATTTACAACGCAACACATTCTGCTCAATCACGAGTCGTCTATACACATGAAGACACAGCATTTCACTTGTGAATTTTGCAACAAGGAATTCGCATTGAAGCAATATTTGAAGAATCACATTGTACGTATGCATATGCAAATGGTGTGTGATATTTGTAAGACGAAGTTTTACTCCAGCAGTCACCTCGAGAAGCATAAGTCGAAGGGTTGTGTGAAAGATAAATATACGTGCGACTGCTGCGGTGAACGATTCTCTTTGAAGATTTATTTGCGCAAGCACATGGAGAAGAAGCATTTCGAGCCCTTATACTGTCATGAGGGGAATAATGCTGAAACCGTTGCAGTATGTACGCCCCCGAAGCGTTTTGATGAAAGTTCTGAGACGTTCGAAACACATACCACAGGCAACCATAAGCGAGAAAGTAAACCAGAATGTGGCACAACCGACAACAAATGCCAAGAAACAAGGAAGAACGAGAAAGCAGCGTCTGGAATCTCGATAAAATTGAAAAACATCGATATTCACACGAAAACCAAATCGAAACCCTCGAAGGTTGTTACGAAGCCAAAACAATTCGGTAAAACTATAAAAACCAACAAGCAAACGAATAAATTGAAAACCACTCTATACACATGTGGGCAGTGCCCCAAAACTTATGATAGTCTAGCAGGCATAAGATCCCACCTGGCCAGCCATTTCGATCCATCCTTCGTCTGCAGCAACTGCCCAGACACATTCCCCACCCTAAGCGAACTGAACAGGCATATGAGAAGCTTACACTTATCTAAAAACGAAATTCGATGTGACAAGTGCGGTAAAACTTTGAAAAGCAATCGCAATTTGCGCGTTCATCTCCAAACGCACTCCGGTGAGCGACCATTCGCTTGCAAACAGTGCGGCAAACGTTTCACGCAAAGCGCATCCCTTTACGCCCACACTAAAATCCACCTGGGTTTGAAGGAGCATGCGTGCTCGTACTGCAACAAAGCATTTACCGAACGTAAAAACATGAAGAATCACGAGCGAACACATACAAAAGAACGTCCGTTCGAGTGCCGTTACTGCTTCAAGAGTTTCGGGGACCCGTCAGCTCTGACGAGACACGTTCGCACCCACACAGGAGATAAAATATACCACTGCCAAATGTGTCACATGAAATTTAGTGATACCAGCGGCCTCGCAGCGCACAAAAAACGACACGATGACGTGAAGCATTACGCCTGTGATTTTTGCGGCAAGCTATTCTCCACACAACAAATGCTATCCAATCATGAGTCGTCAGTACACATGAACATCAAGAATTTCATTTGTGATATCTGTCACAGAAGTTTCTCTCTGAAGCAGTATTTAAAGGGTCATATACAACGCAAGCACATGCAGAGTCTGGACTGCAGTAATTGTGGAATGATATTTTACTCCAAGGGCTGTCTTCAGAGTCACAAGTCGAAGGGTTGTGTGAGAGACAAGTTTACGTGTGATCTCTGCGGAGCCACGTTTTCCTTGAAGAGGTTCGTGAAGAAGCACATGGAGAAGAAACATTTTGAGACCTTGTATTGTCATATTTGCATGGGCAAGTTTTATTCGGATTCGGATCTGCAGAAACACAAATTGAAGCAGAGGTGTGCTAAAAAACTAATATTATCAACATATCGCACCTGCTCGTCTGCTCTAGTCCCTCCGCCACCTTTCCCAAACCCTATAGGTTCGGAAGAAATCCGAGACTTTCACCGGTCTCACGCCGCGCGCCGGCAGTCTGTTCCGCACCGCGACCCGAGCGCGACGTGCGCGTGCGACCACCGTTGCTATGACAACGCGATGACGGACGAAAGCGCGCGATCCGCGGAGGCCTACTCGCGGCCCACCGCCACGGTCTCCAGCCTGAAGTCCGAGGACTCCACGGAACAGTTGATATGCAAAACGCCTCAAGACAAAGTTAAGAATGTCAAGAGTGTCAGCTCCAAAAGTGTGGAAGCGGGAAGTGCTAAGGCGGGCAAGAGGAAGTTAGTGGTGTTTCTGGGGTTGGGGCAGGTGGTGTTAGGGGCTATGTTGGTGGGTGCGGGCGCGATGGCCGTTGTTAAGGGAGCGGCGCTGGCGAGGGTCGGCGCGGGGCTTTGGGCCGGTTGCGTGGCCGTTGTTGCTGGCGTCGTCGGGCTGTTGGCCGGCATCAACGACTGCTACGGTCTCCACGGACCCGGCGAAGGGAGTGGCCTCCTGACGGCGTTCTTGGCGCTGTCCCTGCTGTGCCTCGCGTGCGGGAACACCGCGGCtgtgctggccgccgccgggcTCCAGAGGGCGGCCCGTGCGGCACCCACCACGCACGCCAGCTTCCAGGATGAGATGGAAGCGTGGACGCCCGTGATCACCAACATAGCGGTTCTCGTCATCGCCTCCGTCCACTGCCTGGTCTGCATCATCAGCATATACCACCTGTCGAAGCGCGTGTGCTCCTGTTTCCGTCCCCGCCAGCCCTTCGACCACAACCAGTTTGACCCTGGCTTCAAGCAGCCCTTTGTGGTCCACATTGATGAGAAAAAGGGAGAGCTGAGGGacaaagagagagagaaggGGCACGAGCTGTGTAAAGAGCTGGAGGTGAAGCTTCAGGGGGAgactctaaagaaaaaaaagGCTGAAACTCCAGAATTCGGCAGCGCAAACAGCAAGGAGAAGCTGGTGTCCCATTGGCTTGGCCGGCAgccggcgggggcggcgggggcaGCGGGGGCCGCAGCCCGGGGGCGCAAAGCGAGAGGGGTGCGCAAGCGCCCGCCGCAGCTGGTGCTACTGCCGGCACATCCTGCGCATCCAGCACATCCTGCACATCCTGCCAGCACGGTTAGTACTACTTTAAAACGCTACTTTTGA
- Protein Sequence
- MDEWNVQTDSKYSTSNLYDKCLAQTVPVNKDNECWKRIKHSHSDTSIEECRSNDSVTLFTLKRESKKERTESEINTQPEYKLVTIKPEPQLNFTSSTNQRNSRTSKLRPVKTRLEVTERDNGNTGDSSNQYSCGQCSASFRTLADIKTHLESHLDPSFACDKCPETFITLRQLSRHSLLKHLTKCDIKCNICHKALKSNRNLRLHLRTHTGERPFACKQCGKRFTQNGSLQTHIKIHLGLKEHVCGYCSKAFTEYKNMKNHERTHTKERPFECRLCGKRFGDSSALIRHVRTHTGNKIYQCSLCPMKFSDPSGLTAHKRRHDGVKSYSCDFCDKKFTTQHILLNHESSIHMKTQHFTCEFCNKEFALKQYLKNHIVRMHMQMVCDICKTKFYSSSHLEKHKSKGCVKDKYTCDCCGERFSLKIYLRKHMEKKHFEPLYCHEGNNAETVAVCTPPKRFDESSETFETHTTGNHKRESKPECGTTDNKCQETRKNEKAASGISIKLKNIDIHTKTKSKPSKVVTKPKQFGKTIKTNKQTNKLKTTLYTCGQCPKTYDSLAGIRSHLASHFDPSFVCSNCPDTFPTLSELNRHMRSLHLSKNEIRCDKCGKTLKSNRNLRVHLQTHSGERPFACKQCGKRFTQSASLYAHTKIHLGLKEHACSYCNKAFTERKNMKNHERTHTKERPFECRYCFKSFGDPSALTRHVRTHTGDKIYHCQMCHMKFSDTSGLAAHKKRHDDVKHYACDFCGKLFSTQQMLSNHESSVHMNIKNFICDICHRSFSLKQYLKGHIQRKHMQSLDCSNCGMIFYSKGCLQSHKSKGCVRDKFTCDLCGATFSLKRFVKKHMEKKHFETLYCHICMGKFYSDSDLQKHKLKQRCAKKLILSTYRTCSSALVPPPPFPNPIGSEEIRDFHRSHAARRQSVPHRDPSATCACDHRCYDNAMTDESARSAEAYSRPTATVSSLKSEDSTEQLICKTPQDKVKNVKSVSSKSVEAGSAKAGKRKLVVFLGLGQVVLGAMLVGAGAMAVVKGAALARVGAGLWAGCVAVVAGVVGLLAGINDCYGLHGPGEGSGLLTAFLALSLLCLACGNTAAVLAAAGLQRAARAAPTTHASFQDEMEAWTPVITNIAVLVIASVHCLVCIISIYHLSKRVCSCFRPRQPFDHNQFDPGFKQPFVVHIDEKKGELRDKEREKGHELCKELEVKLQGETLKKKKAETPEFGSANSKEKLVSHWLGRQPAGAAGAAGAAARGRKARGVRKRPPQLVLLPAHPAHPAHPAHPASTVSTTLKRYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -