Pcor025747.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421879.1:6652375-6662115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00052 0.034 15.3 0.2 2 23 84 105 83 105 0.97 2 21 0.00011 0.0072 17.4 1.7 3 23 113 133 112 133 0.96 3 21 3.7e-07 2.4e-05 25.2 3.3 1 23 139 161 139 161 0.98 4 21 0.0018 0.12 13.6 5.1 1 23 167 189 167 189 0.98 5 21 4.5e-05 0.0029 18.6 2.8 2 23 209 230 208 230 0.97 6 21 2.3e-06 0.00015 22.6 2.5 1 23 235 257 235 257 0.98 7 21 2e-05 0.0013 19.7 0.1 2 23 263 284 263 284 0.97 8 21 1.7e-05 0.0011 19.9 1.0 1 23 290 312 290 312 0.97 9 21 9e-05 0.0058 17.6 1.7 1 23 318 341 318 341 0.98 10 21 5.8 3.8e+02 2.5 0.5 3 23 403 423 401 423 0.94 11 21 1.4e-05 0.00088 20.2 2.5 2 23 478 499 477 499 0.97 12 21 7.4e-06 0.00048 21.1 1.7 3 23 506 526 505 526 0.97 13 21 1.2e-06 8.1e-05 23.5 1.7 1 23 532 554 532 554 0.99 14 21 9.1e-05 0.0059 17.6 0.8 1 23 560 582 560 582 0.97 15 21 3.8e-06 0.00025 22.0 1.7 1 23 588 610 588 610 0.98 16 21 3e-07 2e-05 25.4 2.3 1 23 616 638 616 638 0.98 17 21 7.7e-06 0.0005 21.0 2.0 1 23 644 666 644 666 0.95 18 21 6.9e-06 0.00044 21.2 3.7 1 23 672 694 672 694 0.96 19 21 0.083 5.4 8.3 0.4 6 23 712 729 710 729 0.94 20 21 2.1e-05 0.0014 19.6 3.3 1 23 735 757 735 757 0.98 21 21 7.2e-05 0.0047 18.0 3.8 1 23 763 785 763 786 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGTGATTATTTATTCGTTAAAAACGAGCCTGACTGGGCTCCATCAGTAATAAATGAGAGAAAAGAAGCTCGGAGTAGTCCCGACGCTCGCACTGTCAATGACCTAAAGGATGAACTGCAAAAAACAGCTGAAAACGACAACAAACCAGGCATTCCTCAACCTCCTCAAAATGATGGCATCAAGGAAGAGAGCCAATCAGCACAACCCAGCACCGCCACAGGGCCTGGCTCCCACCGCAGatGGCCGTGCGGCGTGTGCGGCAAGACGTCCTGGTCGCCGGCGCACCTGCGCATCCACCAGCGCACGCACAGCGGCGAGCGCCCCGGCTGCTGCCACCTGTGCGGCGCGCGCTTCCGCACCGCCGGCAACCTGGCGCGCCATCTGCTGGCCCACCAGGGACACAAGCCGCATCAGTGCCCGCACTGCCCCAAGAGGTTCACCCAGAAGTCGGTTCTAATAAAACACATACGCATACACACAGGCGAAACCCCATATACCTGCAACGTGTGCCAGAAGAAATTCTCACGCAGCTTCACCCTGTCCTGCCATCTCAGGATACACGGTGAGACGTACACCAAACAGGCAATGCCCAAAACACAGAACCCACCAGAGAGTTGGACCTGCGATGTGtgtaataaaacttttaaaaacaaatcatacaAACACGCACACATGCAGATACATGAGAGAGCGAAGCACACATGCACGGTGTGCCAGAAGCAGTTTGCAACGCAGATGAACCTGGAGAAGCATATGAAGGTGCACAACGCGAAGGAGAGGACTTGTGCTGTGTGCGGTAAGGAGCTGAAGACACAGGCAAATTTGGCGAGACATATGCTGGTACATACGGGACAGAGACCATTCGCGTGCAACTTTTGTGAGAAGAGATTCACGCAGAAGAGCGTTCTGGTGAAACACGTTAGAGTACACACAGGAGAATTGCCGTATACATGTGAGATATGTTTGAAGAAGTTTTCTAGGAGTTTTACATTGGACAATCATCTAAAAAGAGTGCATAagacagttaaaaataaaaatagaattagTGATAAAGTGACTGCTGCTAATGTTGTAGATGAGCAGGTTATGTGTGATGATACAGATTATAAAGATAGTATAGAGTTTCATGATAAAAATGTGGAAGTTACTGATATAGTTGTAAATGATAATGAAGAAGTGAATGATACTAAGCCGTATTGGTGTGGTGATTGCAATTCGTGGTACGCTACGAGCGATGAATTTTACAAGCACGAGtgtgtacataataatataggttACGCGGATGAAAACGACGCGAATAATATTAGCGATAATGAAATAGAAACAGTTGTCGAGGAAAATTATGTTGTTGATGAGAATGTTGAATTTGAAGATCCGATTGTTGAGAaacatgataaaattaaaaataaagctaagAAACGATGGACTTGTAAGAAGTGTGACAagaaatttaaaactaaagcGTATTATAGAGCGCATGTGAAGTCGCATGACGGTGCAAAGGGTTACTGTGTTTTGTGTGACAAGCATTTTAATACCAACGGCAATTTGGTAAGACACATGCTGACACATAACGGTGTGAAGCCGTACCAATGCGAATATTgcaacaaacggtttacacagAAGAGTGTATTGGTGAAACATGAAAGGATACACACCGGTGAGTTGCCGTATGCTTGTGATGTTTGCGAGAAGAAATTCGCGCGCAGTTTTACCCTTTTGAACCATAAGAAGGTGCACAGCGTCGTGAAACCTTTTTCATGCAAATACTGCGATAAGTCTTTCACACAGCGGAGTGCTATGATGATACATGAGAGGAATCATACGGGGGAGCGTCCGTTTTCTTGCAATGTGTGCGGTAAAAGGTTTACTAGTAACAGTACATTGAAAAGCCATAAGCGGATACATAGTGGGAATAAGCCGTTTTTGTGCGACATCTGTTATAAACAGTTCACGACCAGCAGCAACTTTTATAGCCACATGAGAATACATAAAGGTGACAAGAGGCATGCCTGCGATATGTGCGATAAGAAGTTTTATACGAACAGCAGTTTGACCAAACATAAAAGAGTTCACGATGTTAAGcccgccagtGTCCCGGACTTGGGCCAGCCCTGGGGCTGCTGGTGCGCGCGGCGCTTCTCGTcgcgcggcgcgctgctgcGACACGCGCGTgcgcacgccgcgccgcgcccgcacgaGTGCCCGCTCTGCCACAAGCGtttcgcTTTAAGCGGCGACCTGACCCGCCACCGGCGCTCCCACAGCGGCGAGAAGCGCTACACGTGCGACGTCTGCCGCAAGCAGTTCACGCGCAACAACACGCTCGCGCAGCACCGCCGGCTGCACCACGACGCACCGCACACTGatacacaaaacactgacgcacACCACAGTGGTACACAACAAACTGACACGCAACATGCTGACACATAA
- Protein Sequence
- MSCDYLFVKNEPDWAPSVINERKEARSSPDARTVNDLKDELQKTAENDNKPGIPQPPQNDGIKEESQSAQPSTATGPGSHRRWPCGVCGKTSWSPAHLRIHQRTHSGERPGCCHLCGARFRTAGNLARHLLAHQGHKPHQCPHCPKRFTQKSVLIKHIRIHTGETPYTCNVCQKKFSRSFTLSCHLRIHGETYTKQAMPKTQNPPESWTCDVCNKTFKNKSYKHAHMQIHERAKHTCTVCQKQFATQMNLEKHMKVHNAKERTCAVCGKELKTQANLARHMLVHTGQRPFACNFCEKRFTQKSVLVKHVRVHTGELPYTCEICLKKFSRSFTLDNHLKRVHKTVKNKNRISDKVTAANVVDEQVMCDDTDYKDSIEFHDKNVEVTDIVVNDNEEVNDTKPYWCGDCNSWYATSDEFYKHECVHNNIGYADENDANNISDNEIETVVEENYVVDENVEFEDPIVEKHDKIKNKAKKRWTCKKCDKKFKTKAYYRAHVKSHDGAKGYCVLCDKHFNTNGNLVRHMLTHNGVKPYQCEYCNKRFTQKSVLVKHERIHTGELPYACDVCEKKFARSFTLLNHKKVHSVVKPFSCKYCDKSFTQRSAMMIHERNHTGERPFSCNVCGKRFTSNSTLKSHKRIHSGNKPFLCDICYKQFTTSSNFYSHMRIHKGDKRHACDMCDKKFYTNSSLTKHKRVHDVKPASVPDLGQPWGCWCARRFSSRGALLRHARAHAAPRPHECPLCHKRFALSGDLTRHRRSHSGEKRYTCDVCRKQFTRNNTLAQHRRLHHDAPHTDTQNTDAHHSGTQQTDTQHADT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -