Pcor009796.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421858.1:15171807-15174260[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 0.0001 22.6 0.0 3 40 22 59 20 61 0.92 2 2 0.92 9e+02 0.3 0.0 23 35 545 557 544 559 0.91
Sequence Information
- Coding Sequence
- atgGTGCCCCCAAAAATTTCGGAAacgacaaaaaaaaagaaaaagaccgTTCAGTACTCTGCAGAAACTCTAAAAAAAGCACTTGACGATATACGAAAGGAAGGGAGAGGAATACGGGAAACATGTAGATTGTATCAGATTCCTCGAACAACGATTCAAGATCGGCTGAGTGGAAAGAGATCTGATGTCATTGAGACTAGAGGTCCAGATCCTGTACTTGGCAAGGAAGGTGAAAAGAAGGTCAAAGAGTGGCTTATAACAATAGCGAAATGTGGCTTTCCTGTTAAGAAACAAGAACTTTTGGACACTGTTCAAAAAATCGTAAAAGACCATGGCACGAAGAATCCCTTCAAAGATGATCGTCCGGGACAAACCTGGTACTTGAACTTCCTAAAACGCCATCCCGATATATCTTGCCGTGCAGCTGAAGGTATAAATAAAGCCAGAGCAAGGGTGACGGAAGAGTCAATTAAAGTCTGGTTTAGAGATTTAAAAGAGTTTCTAAAAGATACGAATAATGAAGATATTTTGGAATGCCCAGAGCGCTTATTCAATGGTGACGAAAGTGGGTTTTCCATGTGTCCAAAAACAGGAAAGGTCTTAGCGCCAAGAGGGTACAAAAATTTGTATCAAATCAAGGCAGGAAACGAAAAAGATAACTTGACGGTCCTAATTACCTTCAACGCCAATGGACAAGTAAGTCCACCATTGGTTGTTTTTCCTTATATACGCCCGCCACGGGCAGTTATAGAGAACATGCCCGAAGAATGGTGTCTTGGCAGGTCAGAAAGTGGATGGATGCGGTCAGATGTATTCTTTGAATACATTACCAACGATTTCAACAATTGGGTGAATCGCAACTCTATAAAAAAACCCATATTATTATTGATTGATGGTCACAAGTCCCACATGTCATTGGTTTTGAGTGCCATGTGCGAGAAGGTAGGCATAATTTTATATGCTCTACCACCAAACACAACCCATATGCTCCAACCAGCCGATGTAAGCGTTTTTGCTCCACTGAAGTCTTCGTGGAAGGCGGTAGTCAGAAAATTTCTGTCGAAACCAGAAAATGTTAATTCGTGcgttaataaaaccaatttttgtCAGCTGTTTCGTGAGACGTTGGAAGACACAAACAtgaatacaaatataaaaaacggTTTCAGAAAATGTGGACTGTATCCATTTGACCCAAATGCTGTGGATTATAGTAAATGTGTTCAAAATACCATCGAGAATGTGCACAAACAGCCGACAGATCCGTCAAAGGAAATAACTAATACGGATCTTGCTAGTACAAGAAAGGTACTGAAACATCTTAGACCGGTactgaaacagaaaaaaattaatGTCAGTGTTATTTTGAAAGAATTGCGTAAATTGAAGACAAAGACTGGAAACGACGAACTAGATTCTGAAGAAAATATAACAGACAGTTCAGTTGATCAGTCCACATCCATCCAAATGGAATATTCTGCAGAAGGTGTCACAATAACAGATCTATCATTGCCGGTTTTGACTAACATCAGTGATGTGCTGTTCCTCACTAATGATGAAAACAGGGTTGAAAATGTAACAACATCTGAAATTGATAACAATACGGGAGAATCTCATAAAATTATCGTCACTGCACAAGTATATTCTGTCCCTCCACCCACATTTCAAAAGCCGAGTCAACCTGAAGTAGCGGTCGTCATAAATGAACAGACACATGTTCCAAACAAGTTGATACCACAGCCAGTTAGCCAAGACACATTTAATGAGATTTTATCATTTCATGATGAAGATGTGGAGAGTATCAGAGAAGATCCGCCACCCAATGATACTGCAGTTCCATTCAATGAAACTGAAGTAGCAAGAGCTTCTGATGATCCAGACACTTTATCTACGCTTCATTTAACTGGAATGGATAGAAGTTACTTAGAGGTTGGTTCTCTAGTATCTATGGATGATGTCATCATCATGTCTACTCCGAAAGATATTCCAAATGATGTTTTCAGTAATCACTTATTTCTACATGAACCTCTACAAAAAGCCGCTACTAAACTGAAACAAGCAAAAACGCCTGCTGCTATATCGTCTAGTGCATGGCGAAAGTTCTATGAAGAAAAGGAAAATGTAAAGGCAGAGAAACAGGCCGCTATTTTGAAGAGAAAACAAGACAGAGCGGAAGCAGCAAAGCAGAAAAAGTTAAAGAGAGATGTGAAGCCACAGGCCAGGACTCCATCAgctagaaacaaaaaaacaaataaaaaagttttgaaaGAACTCTGCACCGAATGTAAAGATGTTTTGATTAGTGACGCCGAAGAAGATGAAGACAAAAACGTAGGGTGCGATTTCTGTCAAAGATGGTATCATTTAAAATGTACCACCTTTGTCGGATCGTCATATGTCGATATTCTAGATAAATCATTTAAATGTAATGTCTGCATAGCTGACCAAGATTGA
- Protein Sequence
- MVPPKISETTKKKKKTVQYSAETLKKALDDIRKEGRGIRETCRLYQIPRTTIQDRLSGKRSDVIETRGPDPVLGKEGEKKVKEWLITIAKCGFPVKKQELLDTVQKIVKDHGTKNPFKDDRPGQTWYLNFLKRHPDISCRAAEGINKARARVTEESIKVWFRDLKEFLKDTNNEDILECPERLFNGDESGFSMCPKTGKVLAPRGYKNLYQIKAGNEKDNLTVLITFNANGQVSPPLVVFPYIRPPRAVIENMPEEWCLGRSESGWMRSDVFFEYITNDFNNWVNRNSIKKPILLLIDGHKSHMSLVLSAMCEKVGIILYALPPNTTHMLQPADVSVFAPLKSSWKAVVRKFLSKPENVNSCVNKTNFCQLFRETLEDTNMNTNIKNGFRKCGLYPFDPNAVDYSKCVQNTIENVHKQPTDPSKEITNTDLASTRKVLKHLRPVLKQKKINVSVILKELRKLKTKTGNDELDSEENITDSSVDQSTSIQMEYSAEGVTITDLSLPVLTNISDVLFLTNDENRVENVTTSEIDNNTGESHKIIVTAQVYSVPPPTFQKPSQPEVAVVINEQTHVPNKLIPQPVSQDTFNEILSFHDEDVESIREDPPPNDTAVPFNETEVARASDDPDTLSTLHLTGMDRSYLEVGSLVSMDDVIIMSTPKDIPNDVFSNHLFLHEPLQKAATKLKQAKTPAAISSSAWRKFYEEKENVKAEKQAAILKRKQDRAEAAKQKKLKRDVKPQARTPSARNKKTNKKVLKELCTECKDVLISDAEEDEDKNVGCDFCQRWYHLKCTTFVGSSYVDILDKSFKCNVCIADQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01134735;
- 90% Identity
- iTF_01134735;
- 80% Identity
- -