Pcor013994.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- clz9
- Assembly
- GCA_949127965.1
- Location
- OX421863.1:12938505-12941189[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 1.5e-06 28.4 0.1 1 41 14 54 14 57 0.89 2 2 0.13 1.2e+02 3.1 0.0 25 39 800 814 799 816 0.78
Sequence Information
- Coding Sequence
- atgcctaataaatatgcaaaaaagaaaaatccacTATATACACAAGAAGATATGAGCAAAGCAATTCAAGAAGTCGTAAACAATGAGTTGTCAATGTATGCTGCAGCGAAAAAGTATCGGATTCCTTCGACAACTCTTTATGACAAGATCAAAGTGAACTATGCCACGGATCATGTAGGTAGACCGACGGCTATTCcattagaagaagaaaaatgcTTGGCAGAAGCAATCAGAACTATGGAGAAATGGGGATTTGGGCTTTCACGAGAAGAAATATTAAATGTAGTCGCTCAGTTCGTGACAGAAAATAAATTGGTCACCCCATTTACAAATAACAAACCCGGGAAGGATTGGTTCGTGAACTTCCGAAAGAGGCACAACCTTTCTATAAAAAAAGCTCAGCCGGTTGaatatgtaagaaaaaaaatgaccgACCCGTTTGTTATTTCTGAGTATTTTAAACTGCTGAAAGAGACCATGACAGAATATGACATGTTTCAAAGACCACACTTGATTTGGAATCTTGACGAGACATCTTTGTCTCTTGATCCGACAAGGACGAAAGTAGTTGGTGCTGTCAACAAACCTTGCTCTAGAACCACTTGTGGCACTGGAAAAGAAAATATTACGGTACTGACAGCTGTAAATGCCTGTGGCCAAAAGATAACACCCTTAATTGTATTCAAAGGAAAAAACGTGTGGGATCAGTGGATGGCCGTCAAagaaaattatgattttaacCTGGCATATGCAGCCAGTAACAGAGGTTGGATGGAGACAGAAATTTTCCGCAACTATATAGAAAAAATTCTAATTCCAGCTTTGGGTGACGAACGTCCGGTTCTATTAATCTACGACGGACATTCCACTCATGTGGATACGAAAGTCATTGATCTGGCCATTCAAAATGATGTTACGATTCTTAAACTGCCACCTCACACATCCCACTTGTTGCAGCCTCTCGACTTAGCAGTTTTTAAATCATTCAAGAGCAAGTGGGATGCTAAATTAGTTCAGTGGCAGCGTCATAATGTTGGTTGCAAGATGCCTAAAAACATCTTTTCTGAAAGTTTTGCCGAAACATGGCAAGAAATAAATCCAGATGTGATTATGAGTGGGTTCAAAAAAGCTGGAATCCATCCGTTTGATCCCGACGTGATCCCAGACGATAAATACGACCCAGCTGCTTACAAAAGGTATCAAATGGAAAAATCTGAGGCACAAACGCAGTTAAGCCCAAAAACTCCCAAATCACTAAAAAACATGTGTGTTGACCATTTGAATAAACAATTTCAAATTGCTGAAGAATTGACTATGCCTTGCTCTGAAAATACAAATTTCGGTGCCGGAAATGTAACATTGTTGTCTAAACATTCTAAGCAAGATATTCAGAATCGACCTTTCGTAGCAAACCAGACATCAAATTTACCAGAATGCCTGAAAAGCGACCTTCTTCAgcctgaaaaagaaaaagatttgaaaaaaataaatatcatctcGGATAAAATAGTAAGGTTTGAAGATCttttacttgaaaaaatacGCCAGGACAAAAAAGATAATactgtaataaaaaagaaacgagTAGCTAAAGGAGCTGAAGTTATTACTGCGTcatatttgaatgaaaaaatagCAGAAGAAAAGGAAAAGAAGGAAGCCAAAATAACATTAAAGGGCAAAGGAAAgctaaaaaagaaacaaactatTACCTCTGATCTTGTAAAGCCAGGTCCATCGGGTGTAAAGAAAGTTAAAAGCAAAACTCAAggcaaaaagaaatcaaaacgaCGTCGACACGATTCAGACAGCTCTTTGACTAGTATTTCAGATATAATGAGCATATGCAGTGAAACGGATTGTGTTGATATTGATTTCGAAATGTTTGACACATTCTGTCATGATGATAATTTGGATTCTGGAACGGAAGAGTCAAAATCACAAGATAAGGAAACTGTAACTCCTGTTAAACAGCAAACGAAGTTTAATATTGCAAATGATGAAAACATATTAATTGAAGAAGATTTAAACactgcaaataaaaaaagagagAAAGGTAAAGGCAAGGGCAAAAAATCAAAGACTGGTAAAGAAAATCAACATTTAAAGGAAGACTGTAATAAAGAAGAGAATAATAAGACTGATAAAGTTCACAAATATAATAAGAATGTCAAAGAAGAAACGAAAACGAATCATGAGAGTAGCCAAATAAAGTCAAAGACTGACAATATACCTGAAAATGACGCCAAAAACAAACGTAGCGTAACAAAATTGAAGACTGAGAAAATACCaaaaaacgaaaccaaaaataaaaacgaaagtgACGTATTAAAGTTGACGAGTGAGAAAATATCTGAAAGTTTTGATGACAGCCAAACAGAAGatgacaaaaatgaaaaatatgacaTTAACGATTCAGTTCTTGTAAGGTACTTTGTTCGGAAAAGATGGATCTACTACGTTGGATTTATAGAGGATAAGATACAAAAGTACGAGACCCATTACACAATAAATTTCCTGAAAACAATTAAAAGGACGCACGAACCACACCTTACATTTGTTGAAACCAAAAGAAAAGATAAAGATGAAATAACAAATGTGTTAATCGTGAAGAAGATTGTTTTAGAAAAAATCAATGATAAGCAATTTATATTATCGGATGAAAACGACAAagcatatttttaa
- Protein Sequence
- MPNKYAKKKNPLYTQEDMSKAIQEVVNNELSMYAAAKKYRIPSTTLYDKIKVNYATDHVGRPTAIPLEEEKCLAEAIRTMEKWGFGLSREEILNVVAQFVTENKLVTPFTNNKPGKDWFVNFRKRHNLSIKKAQPVEYVRKKMTDPFVISEYFKLLKETMTEYDMFQRPHLIWNLDETSLSLDPTRTKVVGAVNKPCSRTTCGTGKENITVLTAVNACGQKITPLIVFKGKNVWDQWMAVKENYDFNLAYAASNRGWMETEIFRNYIEKILIPALGDERPVLLIYDGHSTHVDTKVIDLAIQNDVTILKLPPHTSHLLQPLDLAVFKSFKSKWDAKLVQWQRHNVGCKMPKNIFSESFAETWQEINPDVIMSGFKKAGIHPFDPDVIPDDKYDPAAYKRYQMEKSEAQTQLSPKTPKSLKNMCVDHLNKQFQIAEELTMPCSENTNFGAGNVTLLSKHSKQDIQNRPFVANQTSNLPECLKSDLLQPEKEKDLKKINIISDKIVRFEDLLLEKIRQDKKDNTVIKKKRVAKGAEVITASYLNEKIAEEKEKKEAKITLKGKGKLKKKQTITSDLVKPGPSGVKKVKSKTQGKKKSKRRRHDSDSSLTSISDIMSICSETDCVDIDFEMFDTFCHDDNLDSGTEESKSQDKETVTPVKQQTKFNIANDENILIEEDLNTANKKREKGKGKGKKSKTGKENQHLKEDCNKEENNKTDKVHKYNKNVKEETKTNHESSQIKSKTDNIPENDAKNKRSVTKLKTEKIPKNETKNKNESDVLKLTSEKISESFDDSQTEDDKNEKYDINDSVLVRYFVRKRWIYYVGFIEDKIQKYETHYTINFLKTIKRTHEPHLTFVETKRKDKDEITNVLIVKKIVLEKINDKQFILSDENDKAYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01134725;
- 90% Identity
- iTF_01134725;
- 80% Identity
- iTF_01134725;