Basic Information

Insect: Pammene aurita
Gene Symbol: stc
Assembly: GCA_947086415.1
Location: OX352294.1:38976031-38994772[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3e-05 0.32 12.5 14.0 3 19 6 22 4 22 0.91

2 15 0.24 5.9e+03 -1.1 0.4 4 10 108 114 107 116 0.93

3 15 6.2e-05 1.5 10.3 16.6 3 19 122 138 110 138 0.87

4 15 0.00022 5.5 8.5 7.3 10 18 186 194 184 195 0.92

5 15 0.0025 63 5.2 11.7 8 18 321 331 315 332 0.79

6 15 0.0025 63 5.2 11.7 8 18 458 468 452 469 0.79

7 15 0.0025 63 5.2 11.7 8 18 595 605 589 606 0.79

8 15 0.0025 63 5.2 11.7 8 18 732 742 726 743 0.79

9 15 0.0025 63 5.2 11.7 8 18 869 879 863 880 0.79

10 15 0.0025 63 5.2 11.7 8 18 1006 1016 1000 1017 0.79

11 15 0.0025 63 5.2 11.7 8 18 1143 1153 1137 1154 0.79

12 15 0.0025 63 5.2 11.7 8 18 1280 1290 1274 1291 0.79

13 15 0.0025 63 5.2 11.7 8 18 1356 1366 1350 1367 0.79

14 15 4.6e-08 0.0011 20.3 16.1 1 17 1403 1421 1403 1427 0.83

15 15 0.00012 3.1 9.3 6.5 1 14 1433 1445 1433 1445 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3e-05	0.32	12.5	14.0	3	19	6	22	4	22	0.91
2	15	0.24	5.9e+03	-1.1	0.4	4	10	108	114	107	116	0.93
3	15	6.2e-05	1.5	10.3	16.6	3	19	122	138	110	138	0.87
4	15	0.00022	5.5	8.5	7.3	10	18	186	194	184	195	0.92
5	15	0.0025	63	5.2	11.7	8	18	321	331	315	332	0.79
6	15	0.0025	63	5.2	11.7	8	18	458	468	452	469	0.79
7	15	0.0025	63	5.2	11.7	8	18	595	605	589	606	0.79
8	15	0.0025	63	5.2	11.7	8	18	732	742	726	743	0.79
9	15	0.0025	63	5.2	11.7	8	18	869	879	863	880	0.79
10	15	0.0025	63	5.2	11.7	8	18	1006	1016	1000	1017	0.79
11	15	0.0025	63	5.2	11.7	8	18	1143	1153	1137	1154	0.79
12	15	0.0025	63	5.2	11.7	8	18	1280	1290	1274	1291	0.79
13	15	0.0025	63	5.2	11.7	8	18	1356	1366	1350	1367	0.79
14	15	4.6e-08	0.0011	20.3	16.1	1	17	1403	1421	1403	1427	0.83
15	15	0.00012	3.1	9.3	6.5	1	14	1433	1445	1433	1445	0.97

Sequence Information

Coding Sequence: ATGCTCGCCTGTCAGCTCCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGTTCCCCTTGCACCAGAGCCAGTGAGTACTGTACACAGTGGACCGCCTCCTGCCGCTCCCACCGCACACCGCTGCGGCGTGGTGTGCGGCCGCATGCTCGCCTGTCAGCTCCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGTTCCCCTTGCACCAGAGCCACTCCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGTTCCCCTTGCACCAGAGCCAGTGAGTACTGTACACAGTGGACCGCCTCCTGCCGCTCCCACCGCACACCGCTGCGGCGTGGTGTGCGGCCGCATGCTCGCCTGTCAGCTCCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGTTCCCCTTGCACCAGAGCCAGTTTCGAGGAGCTGAGCTGCTCGTGCGGTGCGGAGGTGCTGCTGCCGCCCGTCCCGTGCGGGGCCAAGCGGCCCGCGTGCGCGGCGCCGTGCCGCCGGGGCGCGCGCGTGCGGCCCACCCCGCCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCCACGAGGTATGCACACCCACACCCTGCGCGGCCCGTGCCGCCGGGCGCGCGCGTGCGGCCACCCCGCCCTGCACGCGTGCCACGAGGGCGCGTGCCCGCCCTGCGTGGTGCTCACGGCCAAGCGCTGCCACGGCCAGCACGAGGAGCGTAAAACGATCCCGTGCTCGCAAGAAGAGTTTTCGTGCGGCCTACCGTGCGGCAAGCCGCTGCCGTGCGGCAAGCACACGTGCCAGAAGACGTGCCACAAAGGCCCGTGCGACGCCGGCAAATGCACTCAACCGTGCAACGAGAAACGGCCGAGCTGCGGACATCCGTGCGCCGCGCCGTGCCACTCGGGCGACAGCGACAAAGCTGACAAGGGTGACAAGGGTGACAGGAGCGACAAGAGTGACAGGAGCGACAAGCCGTGTCCGAGCAGCGCGCCGTGCCGCAAGCTCGTGCGTGCCACGTGTCCGTGCGGCAGGCGCGCGGCCGAGCGCTCGTGCCACGACAACGCTCGCGACCTGGCCAAAATAATGAGTTCGCTGGCCGCATCCAAGATGCAAGATGGAGGTTCGGTGGACTTGTCGGAAGTGCAGCGCCCCACCGCCATGCTCAAAACACTGGAATGCGACGACGAGTGCCGCGTGGAGGCGCGTACGCGTCGCATCGCCCTCGCCCTGCAGATCCGCAACCCCGACGTGTCCGCCAAGCTGCAGCCGCGCTACAGCGACCACGTGCGCGCCCTCGCCGCGCGCGAGCCCGCCTTCGCACGACAAGTGCACGACAAGCTCACCGAGCTCGTGCAGCTCGCCAAGAAGTCGAAACAGAAGACGCGCGCTCACTCGTTCCCGTCATGCAACTGGCAGAAACGCCAGTTCATACACGAGATGTGCGAGCAGTTCGGCTGCGAGTCAGTCGCGTACGACGCGGAGCCGAACCGGAACGTCGTAGCCACCGCCGACAAGGAGAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGACCGGCAAGCGCCGCGTGCCCGGGCCCGTGCTGCGCGCGCCCGCCGCCGCCGCGCCCGCCGCCACCAAGTCAGTATAG
Protein Sequence: MLACQLHRCEQFCHTGHCSPCTRASEYCTQWTASCRSHRTPLRRGVRPHARLSAPPLRAVLPHRPLFPLHQSHSTAASSSATPATVPLAPEPVSTVHSGPPPAAPTAHRCGVVCGRMLACQLHRCEQFCHTGHCSPCTRASFEELSCSCGAEVLLPPVPCGAKRPACAAPCRRGARVRPTPPLHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRARARPAWCSRPSAATASTRYAHPHPARPVPPGARVRPPRPARVPRGRVPALRGAHGQALPRPARGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEVCTPTPCAARAAGRARAATPPCTRATRAPRGMHTHTLRGPCRRARACGHPALHACHEGACPPCVVLTAKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCQKTCHKGPCDAGKCTQPCNEKRPSCGHPCAAPCHSGDSDKADKGDKGDRSDKSDRSDKPCPSSAPCRKLVRATCPCGRRAAERSCHDNARDLAKIMSSLAASKMQDGGSVDLSEVQRPTAMLKTLECDDECRVEARTRRIALALQIRNPDVSAKLQPRYSDHVRALAAREPAFARQVHDKLTELVQLAKKSKQKTRAHSFPSCNWQKRQFIHEMCEQFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLARETGKRRVPGPVLRAPAAAAPAATKSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -