Paur031510.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:22000958-22041155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.5 7.2e+02 2.4 0.2 1 23 286 308 286 308 0.77 2 17 6.5 7.2e+02 2.4 0.2 1 23 332 354 332 354 0.77 3 17 6.5 7.2e+02 2.4 0.2 1 23 378 400 378 400 0.77 4 17 9.6 1.1e+03 1.9 0.1 1 23 424 446 424 446 0.77 5 17 6.5 7.2e+02 2.4 0.2 1 23 470 492 470 492 0.77 6 17 6.5 7.2e+02 2.4 0.2 1 23 516 538 516 538 0.77 7 17 9.6 1.1e+03 1.9 0.1 1 23 562 584 562 584 0.77 8 17 6.5 7.2e+02 2.4 0.2 1 23 609 631 609 631 0.77 9 17 6.5 7.2e+02 2.4 0.2 1 23 655 677 655 677 0.77 10 17 0.0083 0.92 11.5 2.1 1 23 725 748 725 748 0.96 11 17 7.6e-05 0.0085 17.9 3.1 2 23 753 774 752 774 0.97 12 17 0.65 72 5.5 0.8 2 23 782 802 782 802 0.95 13 17 0.00039 0.043 15.7 1.1 1 21 808 828 808 833 0.94 14 17 0.0026 0.29 13.1 0.3 1 23 841 864 841 864 0.94 15 17 0.00014 0.016 17.1 0.2 1 23 870 893 870 893 0.97 16 17 2.2 2.5e+02 3.9 0.4 1 11 903 913 903 921 0.92 17 17 0.00027 0.03 16.2 1.6 2 23 1187 1209 1186 1209 0.96
Sequence Information
- Coding Sequence
- ATGCGGCTGCGGCAAGGCACCGCAAAACATGGCGCACCTACTGGCCTGCCCCGCCTGCCCATACTACTGCTCGGAGCTCGACCTGATGCACGCAACGCCCAGGGCTGTCGACACCGCCGCCTACTGGGCACCTCAATACCAGAGATAGTACTGGAGAACGCAGTCACTGGAGTGATGTCGCATATCGTCGTCGCCGGGACTGACGACATGGCCCGTATTGAGACTTATCGCATGAAAGGGGAACTTTCAGATATCAATATAGACGTTGGTGACGGTGACAAGGGAGCGCGAAAGCATTCAACCGTGAACAGCCGAAGCTGTGCCCTCACTGGGGCCGAAGCTCCCCCTCCCGAAGGTAGCGTGCAGCGACCCCACACGCTGGTCCCTCATGACAACCTCCACGCCGGGAGCGAGGTGGAAAATCTCGAGTTCCACCCCCTCATGTTGCCTTCGCGATTTTTTATAGAGGTGGTCATCCTTGCAGCCAAATCCAGACAGCTTGGTGTTAACCCCCGATCAATGCCTTCGCCATCCAAAATAGAGGCTGTAATAATATCACAACCGGTCAAGCCAAAAGAGGAGAGAACTGAAGCGCAGAAACAGAGATTTTTCACTGAGTTTATGAGTGAGACTGAAATGCTTGCTTCCAGAGAACAAGCAAAGGAGAAAGTGCAATATGCCAGCTCAGTGTACAAGTGTGAACTCTGCATCATCGGGTACTACACGCAACAACAAGTCGAAGACCACTTTATATCCGACCACAGGGCTAAACCCGGCTATTCCCCCTGCAAAGTGTGCTACATATACGTGGAAGAGTCCAAACTCCAGACCCACATAGAGCAGCACTATCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCACCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCGCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCGAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCGCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCGAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGCACCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAACGCTCATTAAGATCGGGGACATCAAGCAGAGGAAGCACTACCTGCGGTACATCTGCAAGATGTGCGGGCACTCGGAGCGGCTGCTGGCGGCCATCAACGCGCATGTGACCACGCACATGACCAAGGCGCCGCCACAAGCCCTCATTAAGATCGGGGACACCAAGCAGAGGAAGAGTCGTAAAAAAAAGGAGCCCCCCTCCAATCCACCCAAGCCCGGCGATTTGCGTAAACTACTCTCCAAGACAACTATAGAAGGCTACCAGTGTCTCGAGTGCGACATGTTCTTCAAGAACTCCCGTTCTCGGAAGAACCACGTGGCCCGCTTCCATAGAGAAGGGTTGCAGTGTGACCACTGTAAGAAACGCTTCGTCAACCGAACCACTCTGGCAACACATCTAAGACTGCACGAAGGACCGTTGCCGAAGGAAGAGTGTCCGATATGCCACAAGCTGGTGCGAGTCATACAACTCAAGTACCACATACAGAGGCACGAGAATAAGAGCCGATACGAGTGTGTTGACTGTAAAAAGGTATTTTCCCATCTAGCGACGTACCAAGCTCATCTGAAGTACTCTAGAGCACACGCCTCGGATCAAGTATTCAAATTCCCGTGCCCCATGTGCAACAAGGGCTACCCGACCAAAGAGGCGATGCAGGACCACTTCAACTACCAGCATCTCGGGAAGACTTCGCACAAGTGTCCTGTCTGTGATAAGCCCATAGCGTCCCGTGCCAACGTGGAAAAGCACATGATGCGAGTTCACGGAGAGAAGAAGGAGAAACCGAGGAACCACGTCTGTCAGATATGCAGGAAGGCTTTCACTGCGGAATGTGGAATGTCCTACGCTACCGTCGCTGCCACACCAGCGCCCTCTATGCCAGTGACAGTAGCATACAGTCCCGTGAAAACAACTGAGCTACAAAGACCCATGCGACAAGCGCGGATCAAAGCGGCTGAAGCTAAAGCCATGAACAATATAACCCGGAGTAAAAAAACACCTCTTGCAGATGCCAATAAAAATAAGCCGTATGGCCTCAGCACGTCCGATTCACCGAGTGGTTTCAGGCACGTCCCCGTGGACAGCGGGGAGACCAGCGCGACAACGGCACTTTCAATGGATCCACTCGCTCACCACCAGGCAATGCTACGGCTGTCGCACTCGCCACTCCCGCTGAGCCTAATACCCCCGCCCGTATCTCCGCGCCAGCCGCACTCGGCAACGCAACGTGTTAATCAAGTTAGCAATTTTCCAACTCAGCCGGCAGATTCTAAACGTCAGCAATCTCTACAAGTGATTTACCAAAATGTACGCGGATTAAAAACTAAGTTAGTGAAGTGGAGGCAAAACTTAGCTCTACTCGAACACGACGTAATAGCTGTGACTGAAAGCTTCCTTGATAGTACGGTGGAGGATGCAGAATTAGTAGATCAAGGCTGGAACGTACTTCGGCGTGACCGCGGGACACCGTGCGGAGGCGTGCTGCTTGCTGCCCGCTCGCACATTGCAATGCAAAGGTGTCGTGAATTTGAGACTGCCAGCGGAGAAGACTTATGGGCGACGCTAAATTTTAATGGACTAAATTTGTATGATAAAAAGGCCTTAAACCAACACGAAGTTATCCACTCCGGCGCACGACCACTCACCTGTGACCTGTGCCAACAGAGCTTCAAACAGAAGGCGTCCTTATACACGCACAGGAAACGGGTCCACAAGGTCTTCCCCACCAAGAAACAGGTCGAGTTTATGTCCAAAGACCAGTAG
- Protein Sequence
- MRLRQGTAKHGAPTGLPRLPILLLGARPDARNAQGCRHRRLLGTSIPEIVLENAVTGVMSHIVVAGTDDMARIETYRMKGELSDINIDVGDGDKGARKHSTVNSRSCALTGAEAPPPEGSVQRPHTLVPHDNLHAGSEVENLEFHPLMLPSRFFIEVVILAAKSRQLGVNPRSMPSPSKIEAVIISQPVKPKEERTEAQKQRFFTEFMSETEMLASREQAKEKVQYASSVYKCELCIIGYYTQQQVEDHFISDHRAKPGYSPCKVCYIYVEESKLQTHIEQHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICEMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHYLRYICEMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKHHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQTLIKIGDIKQRKHYLRYICKMCGHSERLLAAINAHVTTHMTKAPPQALIKIGDTKQRKSRKKKEPPSNPPKPGDLRKLLSKTTIEGYQCLECDMFFKNSRSRKNHVARFHREGLQCDHCKKRFVNRTTLATHLRLHEGPLPKEECPICHKLVRVIQLKYHIQRHENKSRYECVDCKKVFSHLATYQAHLKYSRAHASDQVFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTSHKCPVCDKPIASRANVEKHMMRVHGEKKEKPRNHVCQICRKAFTAECGMSYATVAATPAPSMPVTVAYSPVKTTELQRPMRQARIKAAEAKAMNNITRSKKTPLADANKNKPYGLSTSDSPSGFRHVPVDSGETSATTALSMDPLAHHQAMLRLSHSPLPLSLIPPPVSPRQPHSATQRVNQVSNFPTQPADSKRQQSLQVIYQNVRGLKTKLVKWRQNLALLEHDVIAVTESFLDSTVEDAELVDQGWNVLRRDRGTPCGGVLLAARSHIAMQRCREFETASGEDLWATLNFNGLNLYDKKALNQHEVIHSGARPLTCDLCQQSFKQKASLYTHRKRVHKVFPTKKQVEFMSKDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -