Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352311.1:23530717-23578665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.014 1.6 10.8 1.3 2 23 509 531 508 531 0.96

2 10 0.066 7.4 8.7 1.4 1 23 564 588 564 588 0.91

3 10 0.0009 0.1 14.5 0.5 1 23 596 619 596 619 0.96

4 10 0.044 4.9 9.2 0.1 2 23 626 647 625 647 0.92

5 10 0.014 1.6 10.8 1.3 2 23 1229 1251 1228 1251 0.96

6 10 0.066 7.4 8.7 1.4 1 23 1284 1308 1284 1308 0.91

7 10 0.0009 0.1 14.5 0.5 1 23 1316 1339 1316 1339 0.96

8 10 0.044 4.9 9.2 0.1 2 23 1346 1367 1345 1367 0.92

9 10 0.014 1.6 10.8 1.3 2 23 1949 1971 1948 1971 0.96

10 10 0.066 7.4 8.7 1.4 1 23 2004 2028 2004 2028 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.014	1.6	10.8	1.3	2	23	509	531	508	531	0.96
2	10	0.066	7.4	8.7	1.4	1	23	564	588	564	588	0.91
3	10	0.0009	0.1	14.5	0.5	1	23	596	619	596	619	0.96
4	10	0.044	4.9	9.2	0.1	2	23	626	647	625	647	0.92
5	10	0.014	1.6	10.8	1.3	2	23	1229	1251	1228	1251	0.96
6	10	0.066	7.4	8.7	1.4	1	23	1284	1308	1284	1308	0.91
7	10	0.0009	0.1	14.5	0.5	1	23	1316	1339	1316	1339	0.96
8	10	0.044	4.9	9.2	0.1	2	23	1346	1367	1345	1367	0.92
9	10	0.014	1.6	10.8	1.3	2	23	1949	1971	1948	1971	0.96
10	10	0.066	7.4	8.7	1.4	1	23	2004	2028	2004	2028	0.91

Sequence Information

Coding Sequence: ATGGGACAGTGCAGCTGCCAAATAAGAATCTTACCAGAAAACGCTGTTAAGACTTTAGATCCGCCGGCGATTGAGAATCCGCGAAACTGGCTCGAGAAGCCCGTCATTAAACAGAAAATAGCGATATTTGTTCAGGAAAAGGTGCCCATACTCGCCCAGCCGCAAACTTTAGTTTCGAATGTCAAAAATTGCCCATCTGCGTCTTTGTCACTCGAAAGCGAGAGTAAAAGAGATAGATACTCTGATAGCAGTAGCCGTCCTAAAGAGGCCTTAGATTCGGCGATGACGGTGTCGTGTGACTCTGACTTCGATAATCCGGACATCGTACCCGGATATGAACGGGTTGTGTCTACCTCTAGTATGAATGACCATTGGTACACCGAAGCGGCCTTCGATAATCTGGATTGTGTACCATATGAGCGGTTGGTGGCTACTCCGAGGATAAACGGCCATAGACACGTTGACACGGACTTCGATAATCCGGACTCTGTGCCGCATGAACGGGTGGTGGCTACCTCTAGTATGAATAACCATTGGGACGCCGAACCGGTCTTCGATAATCCGGACTCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTGACACGGGCTTCGATAATCCGGACGCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTACAACGGGCTTCGGTAATCCGGACACTGTGCCGTATGAACGGGTGGTGGCTGCCTCTATTATGAATGAACATTTGTACGCTGAATCGGCCTTCAATAATCCGGACTCTGTGCCGTATAAACGGTTGGTGGCTACCCGGAGGAAGAACGGCCATAGACACGCTGACGCGGCCTTCGGTAATCCGGACTCTGTGCTGTATAAACGGTTGGTTGCTACCCCGAGGATGGACGGCCATAGACACGCTGACGCGGCCTTCGATAATCCGGACACTGTGCCTGCATGTGGCAACAGGGTCCGCTCCATATTAGAGTCCGAGTCACCAAAGCCCGCGCTTGAGTCGACACACGCGCTAGATTCATTCTCGACACACGAACTAGACAAAAAGTCGACACATGTGCTAGACTCAAATTCGAAAAACGAGCTAAACTCGAAGTCGTCACATGAGCTGGACTCAAAATCGACACACGATATAGACTCATTCTCGACACACGATGTAGACTCATTCTCGACACACGGTATGGACTCAGAGTCAACACTCAGCTGTCAATCTGACTACGAGGACGCAGAGCGTTTTCCAAACATCGTGTTCGCCAAAGCTTTTAATAGTATTTCGGGGGACGGAGAAAATGACGTGTCGGAGGATATAATGAAAAAGTTACACGTGGTGACAAACCCTCCCAGCGAATGGCCGTGTACCTGGGAACGATGTTACCAACGTCATAGCTCGGAAGAGGACTGTAGCGATGATTCTTACGACGATTCAGATAGCACAAGGTCTAATGTGAACTGGACCGGACGCCGGCGCCGCGAGGACTGCAAGAAGTGCAAGCTGTGCGACAAGAAGTTCGACGGTCTCTACCGTCTCTGGAAACATTATGAAAGAGAGCACGTCGACATATGCGTCAAGGAATGTTGTAATGAAACAGAGCTGAAAAATAACACGAAGCGGCGGTTGAAGGTCACAGGCTCGGCCCCGTCGCCACAGTTCAGCTGTCGGGAGTGCGGCTATGACAGTCGCATCAGCTCACACCTGAAGTTGCACCTGGCTACGCAACGACACCGGCTAAGGAGTCAGTGGAGGTTTCAATGTGATATTTGCAAAAGGAAATTCAAAGACAAGAAGGGAATAGCGGAGCACATTGAGAGAGAACACGTAGCGAAGGAAGGCAAAACATGCCCGATATGTTCGGTCGCGTTCCGCAGCGCGCGCGCCCTGCACTTGCACGCCGCCGCGCACGTGCTCGCGCAGGAGTCGCGCGCGCTCGCGCTCGCCGACGAGCACCGCGTGCACGTGCACGGCTACGCTGCACGTGCTCATGCCGTGCACGCGAGCACGCCCACGCCACGCCACGCGCGCAGTCGGACACTGGGCGCAGGAGTTGGCAGGAACGCGGCCGAGTGTAAACCTGAAGACGTTCTATACTGTACAGAGAATATGATTAATATTTTGCCTGCTTTGGGGTTCCCGAACGCCAAGATAAGAATCTTACCAGAAAACGCTGTTAAGACTTTAGATCCGCCGGCGATTGAGAATCCGCGAAACTGGCTCGAGAAGCCCGTCATTAAACAGAAAATAGCGATATTTGTTCAGGAAAAGGTGCCCATACTCGCCCAGCCGCAAACTTTAGTTTCGAATGTCAAAAATTGCCCATCTGCGTCTTTGTCACTCGAAAGCGAGAGTAAAAGAGATAGATACTCTGATAGCAGTAGCCGTCCTAAAGAGGCCTTAGATTCGGCGATGACGGTGTCGTGTGACTCTGACTTCGATAATCCGGACATCGTACCCGGATATGAACGGGTTGTGTCTACCTCTAGTATGAATGACCATTGGTACACCGAAGCGGCCTTCGATAATCTGGATTGTGTACCATATGAGCGGTTGGTGGCTACTCCGAGGATAAACGGCCATAGACACGTTGACACGGACTTCGATAATCCGGACTCTGTGCCGCATGAACGGGTGGTGGCTACCTCTAGTATGAATAACCATTGGGACGCCGAACCGGTCTTCGATAATCCGGACTCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTGACACGGGCTTCGATAATCCGGACGCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTACAACGGGCTTCGGTAATCCGGACACTGTGCCGTATGAACGGGTGGTGGCTGCCTCTATTATGAATGAACATTTGTACGCTGAATCGGCCTTCAATAATCCGGACTCTGTGCCGTATAAACGGTTGGTGGCTACCCGGAGGAAGAACGGCCATAGACACGCTGACGCGGCCTTCGGTAATCCGGACTCTGTGCTGTATAAACGGTTGGTTGCTACCCCGAGGATGGACGGCCATAGACACGCTGACGCGGCCTTCGATAATCCGGACACTGTGCCTGCATGTGGCAACAGGGTCCGCTCCATATTAGAGTCCGAGTCACCAAAGCCCGCGCTTGAGTCGACACACGCGCTAGATTCATTCTCGACACACGAACTAGACAAAAAGTCGACACATGTGCTAGACTCAAATTCGAAAAACGAGCTAAACTCGAAGTCGTCACATGAGCTGGACTCAAAATCGACACACGATATAGACTCATTCTCGACACACGATGTAGACTCATTCTCGACACACGGTATGGACTCAGAGTCAACACTCAGCTGTCAATCTGACTACGAGGACGCAGAGCGTTTTCCAAACATCGTGTTCGCCAAAGCTTTTAATAGTATTTCGGGGGACGGAGAAAATGACGTGTCGGAGGATATAATGAAAAAGTTACACGTGGTGACAAACCCTCCCAGCGAATGGCCGTGTACCTGGGAACGATGTTACCAACGTCATAGCTCGGAAGAGGACTGTAGCGATGATTCTTACGACGATTCAGATAGCACAAGGTCTAATGTGAACTGGACCGGACGCCGGCGCCGCGAGGACTGCAAGAAGTGCAAGCTGTGCGACAAGAAGTTCGACGGTCTCTACCGTCTCTGGAAACATTATGAAAGAGAGCACGTCGACATATGCGTCAAGGAATGTTGTAATGAAACAGAGCTGAAAAATAACACGAAGCGGCGGTTGAAGGTCACAGGCTCGGCCCCGTCGCCACAGTTCAGCTGTCGGGAGTGCGGCTATGACAGTCGCATCAGCTCACACCTGAAGTTGCACCTGGCTACGCAACGACACCGGCTAAGGAGTCAGTGGAGGTTTCAATGTGATATTTGCAAAAGGAAATTCAAAGACAAGAAGGGAATAGCGGAGCACATTGAGAGAGAACACGTAGCGAAGGAAGGCAAAACATGCCCGATATGTTCGGTCGCGTTCCGCAGCGCGCGCGCCCTGCACTTGCACGCCGCCGCGCACGTGCTCGCGCAGGAGTCGCGCGCGCTCGCGCTCGCCGACGAGCACCGCGTGCACGTGCACGGCTACGCTGCACGTGCTCATGCCGTGCACGCGAGCACGCCCACGCCACGCCACGCGCGCAGTCGGACACTGGGCGCAGGAGTTGGCAGGAACGCGGCCGAGTGTAAACCTGAAGACGTTCTATACTGTACAGAGAATATGATTAATATTTTGCCTGCTTTGGGGTTCCCGAACGCCAAGATAAGAATCTTACCAGAAAACGCTGTTAAGACTTTAGATCCGCCGGCGATTGAGAATCCGCGAAACTGGCTCGAGAAGCCCGTCATTAAACAGAAAATAGCGATATTTGTTCAGGAAAAGGTGCCCATACTCGCCCAGCCGCAAACTTTAGTTTCGAATGTCAAAAATTGCCCATCTGCGTCTTTGTCACTCGAAAGCGAGAGTAAAAGAGATAGATACTCTGATAGCAGTAGCCGTCCTAAAGAGGCCTTAGATTCGGCGATGACGGTGTCGTGTGACTCTGACTTCGATAATCCGGACATCGTACCCGGATATGAACGGGTTGTGTCTACCTCTAGTATGAATGACCATTGGTACACCGAAGCGGCCTTCGATAATCTGGATTGTGTACCATATGAGCGGTTGGTGGCTACTCCGAGGATAAACGGCCATAGACACGTTGACACGGACTTCGATAATCCGGACTCTGTGCCGCATGAACGGGTGGTGGCTACCTCTAGTATGAATAACCATTGGGACGCCGAACCGGTCTTCGATAATCCGGACTCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTGACACGGGCTTCGATAATCCGGACGCTGTGCCGTATACACGGTTGGTGGCTGCCCCAAAGATGAACGGCCATAGACACGCTACAACGGGCTTCGGTAATCCGGACACTGTGCCGTATGAACGGGTGGTGGCTGCCTCTATTATGAATGAACATTTGTACGCTGAATCGGCCTTCAATAATCCGGACTCTGTGCCGTATAAACGGTTGGTGGCTACCCGGAGGAAGAACGGCCATAGACACGCTGACGCGGCCTTCGGTAATCCGGACTCTGTGCTGTATAAACGGTTGGTTGCTACCCCGAGGATGGACGGCCATAGACACGCTGACGCGGCCTTCGATAATCCGGACACTGTGCCTGCATGTGGCAACAGGGTCCGCTCCATATTAGAGTCCGAGTCACCAAAGCCCGCGCTTGAGTCGACACACGCGCTAGATTCATTCTCGACACACGAACTAGACAAAAAGTCGACACATGTGCTAGACTCAAATTCGAAAAACGAGCTAAACTCGAAGTCGTCACATGAGCTGGACTCAAAATCGACACACGATATAGACTCATTCTCGACACACGATGTAGACTCATTCTCGACACACGGTATGGACTCAGAGTCAACACTCAGCTGTCAATCTGACTACGAGGACGCAGAGCGTTTTCCAAACATCGTGTTCGCCAAAGCTTTTAATAGTATTTCGGGGGACGGAGAAAATGACGTGTCGGAGGATATAATGAAAAAGTTACACGTGGTGACAAACCCTCCCAGCGAATGGCCGTGTACCTGGGAACGATGTTACCAACGTCATAGCTCGGAAGAGGACTGTAGCGATGATTCTTACGACGATTCAGATAGCACAAGGTCTAATGTGAACTGGACCGGACGCCGGCGCCGCGAGGACTGCAAGAAGTGCAAGCTGTGCGACAAGAAGTTCGACGGTCTCTACCGTCTCTGGAAACATTATGAAAGAGAGCACGTCGACATATGCGTCAAGGAATGTTGTAATGAAACAGAGCTGAAAAATAACACGAAGCGGCGGTTGAAGGTCACAGGCTCGGCCCCGTCGCCACAGTTCAGCTGTCGGGAGTGCGGCTATGACAGTCGCATCAGCTCACACCTGAAGTTGCACCTGGCTACGCAACGACACCGGCTAAGGAGTCAGTGGAGGTAA
Protein Sequence: MGQCSCQIRILPENAVKTLDPPAIENPRNWLEKPVIKQKIAIFVQEKVPILAQPQTLVSNVKNCPSASLSLESESKRDRYSDSSSRPKEALDSAMTVSCDSDFDNPDIVPGYERVVSTSSMNDHWYTEAAFDNLDCVPYERLVATPRINGHRHVDTDFDNPDSVPHERVVATSSMNNHWDAEPVFDNPDSVPYTRLVAAPKMNGHRHADTGFDNPDAVPYTRLVAAPKMNGHRHATTGFGNPDTVPYERVVAASIMNEHLYAESAFNNPDSVPYKRLVATRRKNGHRHADAAFGNPDSVLYKRLVATPRMDGHRHADAAFDNPDTVPACGNRVRSILESESPKPALESTHALDSFSTHELDKKSTHVLDSNSKNELNSKSSHELDSKSTHDIDSFSTHDVDSFSTHGMDSESTLSCQSDYEDAERFPNIVFAKAFNSISGDGENDVSEDIMKKLHVVTNPPSEWPCTWERCYQRHSSEEDCSDDSYDDSDSTRSNVNWTGRRRREDCKKCKLCDKKFDGLYRLWKHYEREHVDICVKECCNETELKNNTKRRLKVTGSAPSPQFSCRECGYDSRISSHLKLHLATQRHRLRSQWRFQCDICKRKFKDKKGIAEHIEREHVAKEGKTCPICSVAFRSARALHLHAAAHVLAQESRALALADEHRVHVHGYAARAHAVHASTPTPRHARSRTLGAGVGRNAAECKPEDVLYCTENMINILPALGFPNAKIRILPENAVKTLDPPAIENPRNWLEKPVIKQKIAIFVQEKVPILAQPQTLVSNVKNCPSASLSLESESKRDRYSDSSSRPKEALDSAMTVSCDSDFDNPDIVPGYERVVSTSSMNDHWYTEAAFDNLDCVPYERLVATPRINGHRHVDTDFDNPDSVPHERVVATSSMNNHWDAEPVFDNPDSVPYTRLVAAPKMNGHRHADTGFDNPDAVPYTRLVAAPKMNGHRHATTGFGNPDTVPYERVVAASIMNEHLYAESAFNNPDSVPYKRLVATRRKNGHRHADAAFGNPDSVLYKRLVATPRMDGHRHADAAFDNPDTVPACGNRVRSILESESPKPALESTHALDSFSTHELDKKSTHVLDSNSKNELNSKSSHELDSKSTHDIDSFSTHDVDSFSTHGMDSESTLSCQSDYEDAERFPNIVFAKAFNSISGDGENDVSEDIMKKLHVVTNPPSEWPCTWERCYQRHSSEEDCSDDSYDDSDSTRSNVNWTGRRRREDCKKCKLCDKKFDGLYRLWKHYEREHVDICVKECCNETELKNNTKRRLKVTGSAPSPQFSCRECGYDSRISSHLKLHLATQRHRLRSQWRFQCDICKRKFKDKKGIAEHIEREHVAKEGKTCPICSVAFRSARALHLHAAAHVLAQESRALALADEHRVHVHGYAARAHAVHASTPTPRHARSRTLGAGVGRNAAECKPEDVLYCTENMINILPALGFPNAKIRILPENAVKTLDPPAIENPRNWLEKPVIKQKIAIFVQEKVPILAQPQTLVSNVKNCPSASLSLESESKRDRYSDSSSRPKEALDSAMTVSCDSDFDNPDIVPGYERVVSTSSMNDHWYTEAAFDNLDCVPYERLVATPRINGHRHVDTDFDNPDSVPHERVVATSSMNNHWDAEPVFDNPDSVPYTRLVAAPKMNGHRHADTGFDNPDAVPYTRLVAAPKMNGHRHATTGFGNPDTVPYERVVAASIMNEHLYAESAFNNPDSVPYKRLVATRRKNGHRHADAAFGNPDSVLYKRLVATPRMDGHRHADAAFDNPDTVPACGNRVRSILESESPKPALESTHALDSFSTHELDKKSTHVLDSNSKNELNSKSSHELDSKSTHDIDSFSTHDVDSFSTHGMDSESTLSCQSDYEDAERFPNIVFAKAFNSISGDGENDVSEDIMKKLHVVTNPPSEWPCTWERCYQRHSSEEDCSDDSYDDSDSTRSNVNWTGRRRREDCKKCKLCDKKFDGLYRLWKHYEREHVDICVKECCNETELKNNTKRRLKVTGSAPSPQFSCRECGYDSRISSHLKLHLATQRHRLRSQWR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -