Paur014356.3
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352313.1:20936384-20942365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 30 6.7 0.6 2 23 50 72 49 72 0.90 2 17 0.77 86 5.3 0.8 2 23 97 119 96 119 0.91 3 17 6.5 7.2e+02 2.4 0.1 3 19 130 146 129 149 0.92 4 17 0.33 36 6.5 0.3 3 23 179 200 179 200 0.94 5 17 0.49 54 5.9 0.4 3 20 225 242 223 245 0.92 6 17 8.9 9.9e+02 2.0 1.5 2 23 302 324 301 324 0.93 7 17 5.9 6.6e+02 2.5 0.3 1 23 347 370 347 370 0.85 8 17 0.0028 0.31 13.0 0.3 2 23 394 415 393 415 0.96 9 17 0.03 3.4 9.7 0.5 1 21 419 439 419 440 0.94 10 17 0.42 46 6.1 0.2 1 23 481 504 481 504 0.93 11 17 0.22 25 7.0 0.2 2 23 530 552 529 552 0.95 12 17 0.024 2.7 10.0 1.6 2 23 576 597 575 597 0.94 13 17 5.6e-05 0.0062 18.3 0.0 1 23 601 624 601 624 0.97 14 17 0.0085 0.95 11.5 0.5 1 23 628 651 628 651 0.98 15 17 4.3 4.8e+02 2.9 1.3 1 23 656 681 656 681 0.91 16 17 0.092 10 8.2 5.7 1 22 690 711 690 713 0.88 17 17 0.0039 0.43 12.5 0.2 1 23 723 746 723 746 0.96
Sequence Information
- Coding Sequence
- ATGAAAGAGAGCATTTATTTTGTTTTAGACAAAAAACCGCTCACCAGTGGTTCGGTAAGGTCCATCAATAGCATCGAAAGAAAAAACGCCGAGGCCATAATTCAGTACGCGACCGCGTTCCCATTTCGGCTCCCCGAGAAGTTGTTGGTATGCGTGTATTGCTGCGAGGATTTCGAAGATCCCTCGCTCTTCAGAAAGCATCAAGACGATGAACACCAAGAGTACAAAATTTCTATGGCGTTCGCTCACGTATCAGATGGCGATTTGAAGGTCGACTGCACCGATTTACGGTGCAGAACGTGCTCTGAACAGTTTAGCAAACTAGAAGATGCGGCTAAGCATTTATTTTATACCCATAACTACCCGCTGCGGTCCAAGTCGATGTTTTGCTTGTACTGCGACGATGAGTTCGAAGACCCTCAGAAGTTCCGCATTCACGCGCATGAATGCCAGCGCTCCTGCACCGACCCAACCTCATTTGCTTACAGTCTACGCAACCAGGAGCACATCAAAGTAGAGTGCACCAACATGGGATGCCGCGTATGCGAAATACCTTTCAGCTCGATCGAGGAAATGGTCAAACATATCTGCGATAACCACGACAGTTCCAAACTAAACTTAGACTACGATACCGGCTTGCAACCCTATAAACTTGAACAAGATAAATGGTTCTGCTTTATATGCGCCAAGAAGTTCCCTTCTCTGACCAAACTCGGCAGGCATACGCCTGAACATTATAGAAAGTGGCCCAGTAAGGAAATAGCTGGACATACTGAGAAAGAACGTAAAACGAAAAAGAGATTGTTCGAAAGATCTGTTAACCAGAACCCGCAACGGCAAAACGCTGTACTGATACTTAAGTACTCTACAGCCTTCCCGTTTAAGACTCGGTTTAATAGAATTGTCTGTTCGTACTGCCATGACGAGTTTGAACCAATGACGGCGTTGAGGTGTCACATCAAAACCGACCATGTCAGTGCTGATTACAACAGCGCTTTTTACAAAGTGGTAGATGACCTAAAAATCGACATAACGGAGTTCAAATGTAACCTATGTTCCCAAGAAATGCCGAGCGTTGATTTCTTTATGAATCACTTGTCCCTCGAGCACAGTAAATCTGTCAACTTTGACGTGCCTTTCGGAGTGCTGCCTTACAAGCAGGGGCCGTCCGAACTGTGGATGTGTCTGGATTGTGATAAAACATACTCTGAATTCTCTCAAATAAACGGTCATTTGCGTAGTCACGTGAAAATATTCACTTGCGACAAATGTGGAGCGACTTTCCTATCTGAACACGGCTTGCGACAACATGAGCGTAACTTTAAATGCTACAAAGCCACTTATAAACCTAGATTCGGAAAAGCGCTCAAGCATCGTAGCAACACTGAAATCATATTGCAATGTTCTACAGCCCGTCCGTTCCGAACATGGGGGCAGAATTTCAACTGCGTCTACTGCCGCGTACAATCCAACGATCCGAATGGCCTAAGAATGCATATGACAGCAAGACACGCCAATACAAATATCCAACACGTTTTCAGTCGAAAACTGAGGAAAGAGTTTCTTAAAGTTGACATTACTGACCTTCAATGCAAGCTGTGCTATTTACGAATCGACTCACTAGATGATCTTATTACCCATCTCAAAAACGATCACAAACAGCCTATCAACGCCGATGTGCAACCCGGAGTTTTACCTTTTAAGTTAAACGACGGATCTCACTGGAAATGCGCTATTTGTACTTGCCAGTTCTCAGACTTCATCTCTTTGAAGAAACACACCGCTGAACATTATCAGAACTTTGTCTGTGACACGTGTGGTGAAGGTTTTATCACAGAATCAGCTTTAATAGCGCACACCAAGATTCCGCACGACAACAAATATAGCTGCAGTCGTTGCGTAGCGACGTTCTCTACTCTAGAAGAAAGGAACATCCACATCAAAACTCAGCATACTACGTTACCATACATGTGTGCACATTGCAAAGATAAACCCCGCTTCGCAACCTGGGAATTGCGGAAGCGGCATCTCATGGAGTTCCACAACTACAAGCCTGGTGCCGAAATGTACGAGTGTACGACTTGCCATATGACCTTTAAGACGAGGTCACAAAAGTATCATCACAATGTTAAAGCCCATCGAACTAAGAAGGAGACAGAATATGGGTATCCCTGTGGTAGTTGTTCTAGAGCCTTCGCGACTAAATTGTCCCTAGATAAGCATATCGCTAAGAAACATTTTCATGTCTGA
- Protein Sequence
- MKESIYFVLDKKPLTSGSVRSINSIERKNAEAIIQYATAFPFRLPEKLLVCVYCCEDFEDPSLFRKHQDDEHQEYKISMAFAHVSDGDLKVDCTDLRCRTCSEQFSKLEDAAKHLFYTHNYPLRSKSMFCLYCDDEFEDPQKFRIHAHECQRSCTDPTSFAYSLRNQEHIKVECTNMGCRVCEIPFSSIEEMVKHICDNHDSSKLNLDYDTGLQPYKLEQDKWFCFICAKKFPSLTKLGRHTPEHYRKWPSKEIAGHTEKERKTKKRLFERSVNQNPQRQNAVLILKYSTAFPFKTRFNRIVCSYCHDEFEPMTALRCHIKTDHVSADYNSAFYKVVDDLKIDITEFKCNLCSQEMPSVDFFMNHLSLEHSKSVNFDVPFGVLPYKQGPSELWMCLDCDKTYSEFSQINGHLRSHVKIFTCDKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVYCRVQSNDPNGLRMHMTARHANTNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDSLDDLITHLKNDHKQPINADVQPGVLPFKLNDGSHWKCAICTCQFSDFISLKKHTAEHYQNFVCDTCGEGFITESALIAHTKIPHDNKYSCSRCVATFSTLEERNIHIKTQHTTLPYMCAHCKDKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGSCSRAFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -