Paur003685.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352310.1:454615-495893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.2e-05 0.0069 18.2 2.7 1 23 224 247 224 247 0.96 2 19 0.053 5.9 9.0 3.4 1 23 254 276 254 276 0.98 3 19 0.15 17 7.6 3.6 3 23 309 330 308 330 0.93 4 19 0.014 1.5 10.8 0.1 1 23 334 357 334 357 0.95 5 19 0.32 35 6.5 0.7 2 20 375 393 374 395 0.93 6 19 0.2 22 7.2 0.2 1 20 520 539 520 541 0.94 7 19 0.2 22 7.2 0.1 1 20 604 623 604 625 0.95 8 19 0.2 22 7.2 0.2 1 20 688 707 688 709 0.94 9 19 0.2 22 7.2 0.2 1 20 772 791 772 793 0.94 10 19 0.2 22 7.2 0.2 1 20 856 875 856 877 0.94 11 19 0.2 22 7.2 0.1 1 20 940 959 940 961 0.95 12 19 0.2 22 7.2 0.1 1 20 1039 1058 1039 1060 0.95 13 19 0.2 22 7.2 0.1 1 20 1123 1142 1123 1144 0.95 14 19 0.2 22 7.2 0.2 1 20 1222 1241 1222 1243 0.94 15 19 0.2 22 7.2 0.1 1 20 1306 1325 1306 1327 0.95 16 19 0.2 22 7.2 0.2 1 20 1405 1424 1405 1426 0.94 17 19 0.2 22 7.2 0.2 1 20 1489 1508 1489 1510 0.94 18 19 0.2 22 7.2 0.1 1 20 1573 1592 1573 1594 0.95 19 19 0.2 22 7.2 0.1 1 20 1672 1691 1672 1693 0.95
Sequence Information
- Coding Sequence
- ATGTCGGATCTTAAAATATGCAGGTGTTGTCTACGAACAGAGTGTAAAGTATTCAACTATGATCGATTTCAGCTCAAGTCTTATTATGAGGAAGTTATGGCATTAAAAGTAAACGACAATGACGCACTGCCTCATTATTTCTGCTATGAGTGTGCAACTATGCTGCACAAGTTCCACAAGTTCAAAGAGAAGTGTTATTGTGGACTAAAAACTCTTAGAGAAGTTTTATGGAGAGGTCCGATAACCTATGAATCTATCTACAAAATCGACCGAAACGCCAGAAACTTACAATCATCATTAGATATAATGAGTGTAACAGACCAGGTGCAATCCTACACTGTCACGGAACCTGAGCTCGAGCCAGAAAACCTAAGAGATAGAGAGAATGGCAGTCCTAACAGTGCCGCTAGTCCTACGAGTGATCTACGCCCAAATACTCCTACATCAGTATTCATAGATATTAAGAAAGAAGTCATTAAATTAGAAAATAAGAATATAGACGAGCGAAGAAAGAGCAAAGACTTTGAACTAAATTCTTGGAAAAATAAGAACAGCAGACGCACAAGGTTCCTAGATGCCAGTAATTGGAAGAAATGTAGTCTGACAGAGGAGGAGGCGGTGAAGGAGTTTAGAGGGCGGGCGGAGAATGCCAAGTATTTGAAAGCTAGTTATAAGTGTAAGGACTGTTTTAAGGGGTTTTCTAAGAAGGATATGCTTAGTCGACATTTGCAGTTACGACATAGTGAGTCTTTGGGCTTATTCTCGTGCCGGCTGTGCCGCATGCGCTTCAAGTGGGAGTCGCACCTGCGCGCGCACCTGCGTCAGCACTTCACCGAGTACCGCTGCCGGCGCTGCCCGTTCGTCTGCAAGCTGGAAAACTCGGCCCTACTGCATGAAGAGTATCACAGTGGAATAACAAGGAAGTGTATTCATTGCGAGGAAGAATTCAGGCACTCGTCGACGTACTACACGCACGTGCGCACGGCGCACCGCAGCGCGCACGTGTGCGCGGCGTGCGGCGCGTCCTTCGTCAGCGCGCCCGGCCTGCGCCAGCACCGCCGCCTCAAGCACGACCGAGACGACCATGACAGCCTGGACTCGGACGACTCGGAGACGGAGACGTACTGCGAGCGCTGCGACATCCGCTTCGAGTCCAGCAAGGCCTTCCGCGAGCACGTGTTCCACTCCGTGCTGCACTCGGAGGGCCTCGAGCATGAACTGCAAGACGAGATCTCAATACCTAGAAAAGTCCTCGGCAAACGACTTCGAGCTAAAATAACTAAAGAAATGAAAAGGAAACCGGAGGAGGAACAAATTACCGCTTCAGACACGAAACGCAGGAAAAGGACGAAGAGGAAGCGACGAAAACCTACCACGTGTCATCAGTGTGGCGCGCACTTCGAGACGCAGACGGCGTGCATGCAGCACCACCTGCGCGAGCACCCGCGCACGTCCTTCTACCCCGACACCGAGCGCCACATCTGCGAGATCTGCGGCGCCTCCCTCGCGCCGGGCAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACACGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCATCCCCCTCCCCCCCTCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACACGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGAGACCTCCCCCCTCCCCCTCCCCCCCTCCCCCCTCCCCTACAGCGTGGCCGTGCACCGCAACATGCACTCGCGCCGCGCCGTGTTCCCGTGCGCGCGCTGCCCGCGCCAGTTCCACTCCGGCGTCGGCCTCAAGCGGCATATGGTGGTGA
- Protein Sequence
- MSDLKICRCCLRTECKVFNYDRFQLKSYYEEVMALKVNDNDALPHYFCYECATMLHKFHKFKEKCYCGLKTLREVLWRGPITYESIYKIDRNARNLQSSLDIMSVTDQVQSYTVTEPELEPENLRDRENGSPNSAASPTSDLRPNTPTSVFIDIKKEVIKLENKNIDERRKSKDFELNSWKNKNSRRTRFLDASNWKKCSLTEEEAVKEFRGRAENAKYLKASYKCKDCFKGFSKKDMLSRHLQLRHSESLGLFSCRLCRMRFKWESHLRAHLRQHFTEYRCRRCPFVCKLENSALLHEEYHSGITRKCIHCEEEFRHSSTYYTHVRTAHRSAHVCAACGASFVSAPGLRQHRRLKHDRDDHDSLDSDDSETETYCERCDIRFESSKAFREHVFHSVLHSEGLEHELQDEISIPRKVLGKRLRAKITKEMKRKPEEEQITASDTKRRKRTKRKRRKPTTCHQCGAHFETQTACMQHHLREHPRTSFYPDTERHICEICGASLAPGSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPSPTAWPCTATCTRAAPCSRARAARASSTPASASSGIWCVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPPLQRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHTRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPSPTAWPCTATCTRAAPCSRARAARASSTPASASSGIWCVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPPLQRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPLPPPLQRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHSRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPPLQRGRAPQHALAPRRVPVRALPAPVPLRRRPQAAYGGETSPLPLPPSPLPYSVAVHRNMHTRRAVFPCARCPRQFHSGVGLKRHMVVRPPPSPSPPPPSPTAWPCTATCTRAAPCSRARAARASSTPASASSGIWW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -