Paur014460.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352313.1:22856896-22870230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.59 66 5.7 0.2 2 21 170 189 169 192 0.85 2 17 0.048 5.4 9.1 0.8 1 16 199 214 199 219 0.85 3 17 0.0015 0.17 13.8 1.3 1 23 229 251 229 251 0.98 4 17 0.055 6.1 8.9 3.9 1 23 264 286 264 286 0.96 5 17 5.4e-06 0.0006 21.5 2.7 1 23 292 314 292 314 0.98 6 17 3.1e-05 0.0034 19.1 2.0 1 23 320 342 320 342 0.98 7 17 8.3e-05 0.0092 17.8 1.4 3 23 350 370 348 370 0.98 8 17 0.61 68 5.6 0.7 12 23 413 424 412 424 0.93 9 17 0.61 68 5.6 0.7 12 23 449 460 448 460 0.93 10 17 0.61 68 5.6 0.7 12 23 485 496 484 496 0.93 11 17 0.24 27 6.9 0.5 11 23 538 550 535 550 0.90 12 17 0.61 68 5.6 0.7 12 23 575 586 574 586 0.93 13 17 0.24 27 6.9 0.5 11 23 628 640 625 640 0.90 14 17 0.36 40 6.3 0.8 11 23 681 693 678 693 0.90 15 17 0.61 68 5.6 0.7 12 23 719 730 718 730 0.93 16 17 6.4e-05 0.0071 18.2 0.5 1 23 736 759 736 759 0.96 17 17 0.29 33 6.6 2.1 1 23 764 789 764 789 0.89
Sequence Information
- Coding Sequence
- ATGTATACTGTTAGTTCGTTGGACGGTGATATTTACAACTACGAATATTTCCTCTTTGAAGACGTGTGCCGACTCTGTTGGAAAAGGAATGCTACCCAAGAAATATCGCCCAAAAGTGTGGAAAATGATACGGAATACAGCATTCAGCTTTTGGATCAAATACGTGATTGTCTGGATATCGTTTTAACACACGAATGCCGGCCAAACAAAGTCTGTACGAGTTGCAGTGATGAAGTAAAAAAGTTCTATGAATTTAAGAGATTTTGCTTCGAAACTGATAGGAAACTTCGCGAAATATTACGAAGTTACGTAGAAACTGCAGAAAAGTCTCCAGATAAGAATGAATGTTACGTAAAAGTAGAAAATGATCTTCCTATAGAGTTAGAACAAGACGAATCGTTTGACGACTTTCTAGAGTCCCTCGAGTATTCTGACTCCAGTGGAAACGTGAATAAACAAAAGAAGGTCAAGCTAAAACAGACTTACAAGCCAAAACGGTCACCAACTTATTGTAATATCTGTAGAATAGACTTCAAAACTGCCGAGCAAATAGCATTGCACAATTCACAAAACCATGGAATAGAAGGCAACTTCTACAAGTGTTTCGGATGTGAGAAACGCTTCAAAAGCCGAAAAACTAGAATAGGACATGAAATCAACTTCTGTAAAGGTTTAAAAGATGGCTACCGGTGTGCTGTGTGCGACCGATGCCTCCCGAAGAGGAGGATGTATGAAGCGCACATGAGGGACCATAGAGACAATGTAGCCATAGAGTTGCCGGAGGAGTTGTTTAAGTGCAAGCGTTGTTGCGTGTCGTTCAAGACTAGGGACAGCTTGAAGGAGCATGTGTCTGGGCACGAGACTGCAAAGAAATATGTTTGTGAAAGTTGCGGCCGCGTGTTCACCCGACAAGACTACCTCCACAAACACAAGCTCACACACACCGGCACCAAACAGCACGTGTGTCCACACTGCGGCTTCCGAGCCACACAGCGGTCCTCACTCATCGTGCATATCAGGAAGCACACGGGGGAGCGTCCGTACGGCTGCGACGTGTGCCCGCAGCGCTGCGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCATGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCATGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCCCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGTCATGATGTACGTGACGTATCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGCTCCAACCTGCGCACGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGGTGACGCGGGGCTCCAGGTGGCAGGGGGGGGGGGGTCATGATGTACGTGACGTGTCCAGCTCCAACCTGCGCGCGCACCGCCGCCGCCACCTCGGCCTGCAGCAATTCCAGTGTACGATATGCGACAAGAAGTTCGGGTACAAGGTGAGCCTGGAGGAGCACGTGTCCTCCTCCCACCGCCGCGCCGCGCACTCCTGCCCGCACCCGGCCTGCCGCGCGCGCTACTCCCGCCAGAGGGGGCTGAGGCGACACCTCTCCGCCAAACATGGTGACAGTGAACCGCGTGGTGAGAGGGACAAGGTCGATAATCTTTTGAAGATATTATAG
- Protein Sequence
- MYTVSSLDGDIYNYEYFLFEDVCRLCWKRNATQEISPKSVENDTEYSIQLLDQIRDCLDIVLTHECRPNKVCTSCSDEVKKFYEFKRFCFETDRKLREILRSYVETAEKSPDKNECYVKVENDLPIELEQDESFDDFLESLEYSDSSGNVNKQKKVKLKQTYKPKRSPTYCNICRIDFKTAEQIALHNSQNHGIEGNFYKCFGCEKRFKSRKTRIGHEINFCKGLKDGYRCAVCDRCLPKRRMYEAHMRDHRDNVAIELPEELFKCKRCCVSFKTRDSLKEHVSGHETAKKYVCESCGRVFTRQDYLHKHKLTHTGTKQHVCPHCGFRATQRSSLIVHIRKHTGERPYGCDVCPQRCVSSSNLRAHRRRHLGLQQFQLQPARAPPPPPRPAAIPGDAGLQVAGGGGHDVRDVSSSNLRAHRRRHLGLQQFQVTRGSRWQGGGHDVRDVSSSNLRAHRRRHLGLQQFQVTRGSRWQGGGHDVRDVSSSNLRAHRRRHLGLQQFHVTRGSRWQGGGVMMYVTCPAPTCARTAAATSACSNSSSNLRAHRRRHLGLQQFQVTRGSRWQGGGHDVRDVSSSNLRAHRRRHLGLQQFHVTRGSRWQGGGVMMYVTCPAPTCARTAAATSACSNSSSNLRAHRRRHPGLQQFQVTRGSRWQGGVMMYVTYPAPTCARTAAATSACSNSSSNLRTHRRRHLGLQQFQVTRGSRWQGGGGHDVRDVSSSNLRAHRRRHLGLQQFQCTICDKKFGYKVSLEEHVSSSHRRAAHSCPHPACRARYSRQRGLRRHLSAKHGDSEPRGERDKVDNLLKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -