Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352308.1:26140775-26147246[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00027 0.03 16.2 6.1 1 23 349 371 349 371 0.98

2 12 0.74 83 5.3 0.3 2 23 379 401 379 401 0.92

3 12 0.0059 0.66 12.0 0.6 1 23 405 427 405 427 0.96

4 12 0.16 18 7.5 0.4 1 23 432 455 432 455 0.96

5 12 0.0038 0.42 12.6 0.1 1 23 459 482 459 482 0.93

6 12 0.032 3.5 9.7 0.2 1 22 494 515 494 519 0.93

7 12 0.00083 0.092 14.6 0.1 2 23 538 560 537 560 0.95

8 12 0.19 21 7.2 1.9 2 23 579 601 578 601 0.96

9 12 0.0013 0.14 14.0 0.3 3 23 616 636 615 636 0.97

10 12 0.26 29 6.8 0.1 3 23 643 663 642 663 0.92

11 12 8.1e-05 0.009 17.8 3.4 1 23 669 691 669 691 0.98

12 12 1e-06 0.00012 23.8 1.2 1 23 697 720 697 720 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00027	0.03	16.2	6.1	1	23	349	371	349	371	0.98
2	12	0.74	83	5.3	0.3	2	23	379	401	379	401	0.92
3	12	0.0059	0.66	12.0	0.6	1	23	405	427	405	427	0.96
4	12	0.16	18	7.5	0.4	1	23	432	455	432	455	0.96
5	12	0.0038	0.42	12.6	0.1	1	23	459	482	459	482	0.93
6	12	0.032	3.5	9.7	0.2	1	22	494	515	494	519	0.93
7	12	0.00083	0.092	14.6	0.1	2	23	538	560	537	560	0.95
8	12	0.19	21	7.2	1.9	2	23	579	601	578	601	0.96
9	12	0.0013	0.14	14.0	0.3	3	23	616	636	615	636	0.97
10	12	0.26	29	6.8	0.1	3	23	643	663	642	663	0.92
11	12	8.1e-05	0.009	17.8	3.4	1	23	669	691	669	691	0.98
12	12	1e-06	0.00012	23.8	1.2	1	23	697	720	697	720	0.98

Sequence Information

Coding Sequence: ATGGTAGCGTACTGTTGTGTCAAAGGTTGCAGTAATAACAGCAGCAACAAAAAGAAAGACCCAAATGATACGACATCTTTTCACGCCTTTCCATCAAATATAGAAATGAAACAAAAGTGGCTGAAAGCTATTGGGAGGCCGGACTGGACTCCACCGGCATATGCCCGCATTTGCAGCTGCCATTTTAGCTATGAACAGATAAACCATGATGGTCGGAGGATACGGATCAAGGATGATGCTGTTCCTATAAAGGATTTACCTGTCAACTCGAACTTTGAAGCTTCAGATGTAGAAGCATGCAGATTTTGCCTGGCCACTGAGGTGCGCCTGCACAGCTTGCAGGATGGAGTGCACCGGTTATACTTGGAGTCTTTAGTAGGATATAATGCAAACTACATCATAGAAGGTCTTCCACAGTTTATTTGCTATGAGTGTGCAGCTTATCTAAAAAAATGCTACAACCTATTGGAAAAAAGTCTTACTGTTCAAGCTACTTTACTTGACATTTTTGCACAATATGGCAAGATAACAATAAACCTTATCAATTTAAACAAGCGCAAAGAACTAAATTTGTCATCATCATTAACTATACATGAAATAAAAACAATCGATGAATACAAACATTACAATTATTTCGAAAACCACGAATCTCACATACATGACGCTGAAGTTAAAACAGATGACAATTACTTAAGTGTACCTAAATTAGAAGTCACAGATTTGATGGTAAATCTTGAAGATACTGAAGCTACATATGAGGATATTGTTGAAGATAGAAACTTAAAAGATGATAGATCAGATCGGTTTGATGATGAATTCAGTAATTCCATAGATTTGAGTTTAAATAACGTAGTTAAATCTGAAACAGTTAACTTACCTAAACCGAAGATAATGAAAAATATTTCCAAAGCAAATAAGCTCGAAGGTTTAACGCCCAATGAAGTCGACATGCAAGAATGTTTTAATATTTTTCATTTGACGTTGGAACAACAAATAGAAGAATGGAGCAAAACAAAAGAGAAGAAGGATTTTAGTGAAGAATCATTCAAATGTCATATATGCTCAAAAGTGTTTGCTCATCAGAATAGCTATAAATTGCATACACAGAGTCATGATCCAGGCCGAGGTAGAGCAGAGTGCCCCGTGTGCAAGGTTCATTTCCAGAGCGAGGTGCTCGTCCGCTCACACGCCAGTCGCGCGCACGGCAAGAAATTCTACTGCAAATTATGTCCGAAGGTCTTCAATAACGTCGGCGTAGCTAAAAAGCATTACAAGTGGCATGTTGGTTACGTATACAATTGTTCCATGTGCGCATTCTCTACCGTGCACGCGTCAGCGCTGGGCGAGCACCGGCGCGCGCAACATGTTAGCGCGCATGCCTGCGCGCGCTGCGGCCGCGCCTTCGTCAGTGCGCGCGGGCTGCGGCTGCACGCCGCCACTGTTCATCGCGAGGAAGATGGGTCAGAGGACAATCTAAAATATAGGTGTGAGCAGTGCGAGCTCAACTTCAAGTCAGAAGGGGCGAGGCGAGTCCATATACTCACGGCCAAACAACACAGGAAAAATTCTAATCTATGTGACACAACATCGCAACACCAGAATCTTAAAACCACTTGCAGCAAGTGCGGCATAGAGTTTCCGACACTGAAGGCGCTTATAGAGCACAGAAGAGCAGAACACAGAAGGACTAAGAAGAAAACTAGCTGGAGTCTGCCAGGCGATTCTTATCCGACGAAGTGTGACCATTGCGAGACGGTGGTCTCCAATCGTGCTGAGCATTGGCGTCACGTTCGCGTGACGCACCCCGCGCAACGCGCCACCTACCAACCCGTCGTTACAGCTATTTGTGATACTTGTGGGAAAGGCTTCCAGAACTCAACAAAACTAGCACTCCACGTGCTCCGGCACGGCGCGCCGACCGTGGCGTGCCCGGCGTGCCCGCGCGTGCTGCACGACAAGCACGCGCTGGCGCGCCACGCCGCCGCGCACCGGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCTCGCGCCTTCAAACAGAGGGCTAACCTCCACCGGCATGAAAGGGTACATACTGGTGTAACTCCATACGAGTGCTCAATGTGCGGGAAGAAGTTCAAATACTCGACCAGCTTGAACTTGCACGTGCGGACCGTGCACTACAAGTTACCGCACCCTCCCAGGAAGAAGAAGAACAAAGTGGAAAGAAGCGATACTCATTATGTAAAATAA
Protein Sequence: MVAYCCVKGCSNNSSNKKKDPNDTTSFHAFPSNIEMKQKWLKAIGRPDWTPPAYARICSCHFSYEQINHDGRRIRIKDDAVPIKDLPVNSNFEASDVEACRFCLATEVRLHSLQDGVHRLYLESLVGYNANYIIEGLPQFICYECAAYLKKCYNLLEKSLTVQATLLDIFAQYGKITINLINLNKRKELNLSSSLTIHEIKTIDEYKHYNYFENHESHIHDAEVKTDDNYLSVPKLEVTDLMVNLEDTEATYEDIVEDRNLKDDRSDRFDDEFSNSIDLSLNNVVKSETVNLPKPKIMKNISKANKLEGLTPNEVDMQECFNIFHLTLEQQIEEWSKTKEKKDFSEESFKCHICSKVFAHQNSYKLHTQSHDPGRGRAECPVCKVHFQSEVLVRSHASRAHGKKFYCKLCPKVFNNVGVAKKHYKWHVGYVYNCSMCAFSTVHASALGEHRRAQHVSAHACARCGRAFVSARGLRLHAATVHREEDGSEDNLKYRCEQCELNFKSEGARRVHILTAKQHRKNSNLCDTTSQHQNLKTTCSKCGIEFPTLKALIEHRRAEHRRTKKKTSWSLPGDSYPTKCDHCETVVSNRAEHWRHVRVTHPAQRATYQPVVTAICDTCGKGFQNSTKLALHVLRHGAPTVACPACPRVLHDKHALARHAAAHRPARPHRCARCPRAFKQRANLHRHERVHTGVTPYECSMCGKKFKYSTSLNLHVRTVHYKLPHPPRKKKNKVERSDTHYVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01133790;
90% Identity: iTF_01133790;
80% Identity: iTF_01133790;