Paur030167.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:4737214-4754134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00039 0.043 15.7 2.6 2 23 158 180 158 180 0.96 2 22 0.0061 0.68 11.9 0.1 2 23 189 211 189 211 0.92 3 22 1.5 1.7e+02 4.4 0.1 5 23 216 235 215 235 0.91 4 22 0.075 8.3 8.5 0.2 2 21 244 263 243 264 0.95 5 22 0.56 62 5.7 0.2 3 23 277 298 275 298 0.93 6 22 0.0024 0.27 13.2 0.5 1 23 303 326 303 326 0.96 7 22 2.1 2.4e+02 3.9 0.7 1 11 357 367 357 379 0.75 8 22 3 3.3e+02 3.5 0.1 1 11 394 404 394 407 0.90 9 22 2.1 2.4e+02 3.9 0.7 1 11 453 463 453 475 0.75 10 22 3 3.3e+02 3.5 0.1 1 11 490 500 490 503 0.90 11 22 2.1 2.4e+02 3.9 0.7 1 11 549 559 549 571 0.75 12 22 3 3.3e+02 3.5 0.1 1 11 586 596 586 599 0.90 13 22 3 3.3e+02 3.5 0.1 1 11 645 655 645 658 0.90 14 22 2.1 2.4e+02 3.9 0.7 1 11 704 714 704 726 0.75 15 22 3 3.3e+02 3.5 0.1 1 11 741 751 741 754 0.90 16 22 3 3.3e+02 3.5 0.1 1 11 800 810 800 813 0.90 17 22 3 3.3e+02 3.5 0.1 1 11 859 869 859 872 0.90 18 22 3 3.3e+02 3.5 0.1 1 11 918 928 918 931 0.90 19 22 0.00087 0.097 14.6 5.4 1 23 977 999 977 999 0.97 20 22 1.8e-06 0.0002 23.0 0.7 1 23 1005 1027 1005 1027 0.99 21 22 0.00011 0.012 17.4 1.3 1 23 1033 1056 1033 1056 0.96 22 22 1.5e-05 0.0017 20.1 0.4 2 23 1064 1086 1063 1086 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGATATTGAAACAAAACCGGTACTTGAAGTTGAAATATTAGAAACAAATATAGATAAACAAATAAACAATGGTACAAAAAGAGGTAGACTAAAAGTTCATAAAGAAAGATCACAGAATAAAAAGCGAGATTCAAAATCCAAGAAAGTAAGAAAGAAACATGAAGAAAAGAAAGAAATTAAAATCAAAGTTAAAGACTCTGAACCAGGAAGGTTTTTCACGATAGAAGAAATTGAAGAATTTGTAAAGAAGTATAATTTTGAAATCCAGTATTTGACTGAGGAAGAGATGGCGGAGGAGATGGAAAGGAGGAAAGCGTCGGATAGAACGAGTGCACCTGTGTCGGGCTTCTACCTGCAGCAATACACGCACCGGTTGAGGCTGCGGTGTACTGAATACGGAGAGTGCGTGTGGGGCAGGAAAGAGTGCGTCGCGCACGCGGCGCGCCACGCCGGCACCACGCGACAATGCAAGTACTGCGGGAAGCACTTCCTTAAAAAGTCATCGTATACTTGGCATATGCGTGCGGCCCATCCCGTAGAGAACTCGGCGCGCGGCTCCTGTGAACTGTGTGGCGAAATATACACCAGCGCTAAGGGACTTAAGGCTCACAAGCTACTGGCGCACAAGAGATCGTGCGTGTGTGGCGAGATCTACACCAATGACAAGGGACTTAAGGCACACAAGCTGCTGTCTCACAACAAGGGCTCAGCGCCAGGGCTACAGTGCGCGCGGTGTCGCGCTCAATTCGACAACCAGGACGCGCTGAGTCAGCACCAGCGACAGCAAATAGACGACAAATGTGACCCTAATTTAAGCGCATGCGCGACGTGCGGCGCGGGGTGCGCGGGCGCAGAGGCGCTGTTGCGACACATGCATGCCACTCACCAGGTGGAGATCTTCACGTGTGATCTCTGCAATAAATCCTTCCTATCCAAACCGTCGCTCTCAACCCACATAGACCGCGTCCACCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGAAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGTAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGTAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCTGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGTACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGGTAACCATACACCCGCGACATGTGCACCCGTCCTCAACACACATAGACCGCGTCCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCGCGCAGCACAGGAAGCACAGCAAGCGGCCCGCGCAGCACAGGGAGCGGCAGCACGACCACATGTGCGAGCGCTGCGGGAAGGCCTACACGACACACCAGTTTCTGAAGAACCACCAGATGACGCACACGGGCGAGCGGCCCTTCAAGTGTGACCGCTGCCCCAAGGGGTTCACAACTGCCGTGCAGCTCACGTGGCACACGAGGACACATACAGGGGAACGCCCATTCCAGTGCGATCAATGCCACCAGGCCTTCAGCTTAGAGGGCAACCTGAGAAGACATCGCAAGGCGGTGCACCTAGGGCTCCGCAAGAATGTGCCATGTCCGCGCTGCGAGAAGACCTTCTCCACCAACTCCACAATGAAGCTTCACGTCAGAACAGTGCACGACGGAGCGCCCTGGCCGCGCCGCGACCGCAGGCCGAAGGCGCGCCCACAAGTTACACTGTAG
- Protein Sequence
- MENDIETKPVLEVEILETNIDKQINNGTKRGRLKVHKERSQNKKRDSKSKKVRKKHEEKKEIKIKVKDSEPGRFFTIEEIEEFVKKYNFEIQYLTEEEMAEEMERRKASDRTSAPVSGFYLQQYTHRLRLRCTEYGECVWGRKECVAHAARHAGTTRQCKYCGKHFLKKSSYTWHMRAAHPVENSARGSCELCGEIYTSAKGLKAHKLLAHKRSCVCGEIYTNDKGLKAHKLLSHNKGSAPGLQCARCRAQFDNQDALSQHQRQQIDDKCDPNLSACATCGAGCAGAEALLRHMHATHQVEIFTCDLCNKSFLSKPSLSTHIDRVHLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRLLQHHQLAQHRKHSKRPAQYRERQHDHMCERCGKAYTPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTVTIHPRHVHPSSTHIDRVLGIRPLQHHQLAQHRKHSKRPAQHRERQHDHMCERCGKAYTTHQFLKNHQMTHTGERPFKCDRCPKGFTTAVQLTWHTRTHTGERPFQCDQCHQAFSLEGNLRRHRKAVHLGLRKNVPCPRCEKTFSTNSTMKLHVRTVHDGAPWPRRDRRPKARPQVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -