Paur030084.2
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:3984628-4006271[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 2.8 10.0 1.2 1 23 288 310 288 310 0.98 2 12 0.0025 0.27 13.2 0.8 1 23 317 339 317 339 0.96 3 12 7.6 8.5e+02 2.2 0.1 2 16 344 358 343 360 0.90 4 12 2.7 3e+02 3.6 1.4 2 23 378 399 377 399 0.95 5 12 1.9e-05 0.0022 19.8 1.6 1 23 404 427 404 427 0.98 6 12 0.018 2.1 10.4 0.1 2 23 433 455 432 455 0.94 7 12 0.0035 0.39 12.7 0.2 1 21 461 481 461 486 0.93 8 12 0.02 2.3 10.3 0.7 3 23 492 513 491 513 0.95 9 12 0.0004 0.045 15.6 2.6 1 23 518 541 518 541 0.97 10 12 8.9e-05 0.0099 17.7 0.7 1 23 577 599 577 599 0.98 11 12 1.1e-05 0.0013 20.5 3.8 1 23 605 627 605 627 0.99 12 12 0.00016 0.017 16.9 0.3 1 22 633 654 633 654 0.97
Sequence Information
- Coding Sequence
- ATGGATATCTTACAAAATGAAACCTCAAAAGAGGAGCCGTTGTGCTGCCGCGCCTGCCTGTCGACCGACGGCAGATTGTTCAACATCCATGAATATAAACTTGGCGACGCCTTTGCTCTCATTACAGGGACTCCCGTTGGCAAGGACAAGTTCCCGCAGCACGTGTGCGCGTACTGCGGCACCCAGCTGCTTAAAAGCGCGTCGTTCAGAGAAATGTGTCGCCGCTCGCAACAGACGCTGACGTCGGAGCTACTCAAGGACAAGCCAGACACAGATGGTATTCGCCGAATAAAGCGACCTTGTAAACAATTCCTTGAGCTTACATTTACTGAAGTGCACACGATAGAATGTATAGATGGCCTACCGGCAGACAATATCAAACGGGAACCAAAGACAAATGATGTAGATATTTTAAAGGCAAGCACTAATAGCGTAAAAACAGCAGATACCGAAGTGAAGATGGAAATGGAAATTGAAGAAGACACAAGCCTATTTAGTGAAGAAGTAAAAAGAGAGTTGGACGACGAATTTGAAAAAAGCAATGTGACAGTTGATAGCATTAGTGGCGTAAAACTTGTTAAATTACCGCTGAAAAGGCAACGAGGAATGAAAAGAGAGGTTAAGAAGAGAACGGATGTGAAAATTCGCCAAACTAAAAGCAAAGCTACTAAGCGTGTGAGTACAGGGAAGGATAAGAGAGTGAAAAGAAAAATTAGGAATGCCGAGAACAATTATATACCAGAGTTTGATGTTGCTAAATTTGAGAGTGCTTATGGAGTGAAAATAATGATTCTAAGCAAGGAGGAGCAGCTGGCAGACCTGGCCTCCCGCAAGGAGTCCCTGAACTACCAGCAGTCGCGGTTCCGGTGCCAGGACTGCTGCAAGGGTTTCGCCGCGGAGGCAGCCTACACCAACCATATGCAGCGCCACAACCCGAGCGAGGGAGATTTCGTGTGCGAGATCTGCTCCGTGCGCTACAAGCGAAGGTTCCAAGTGCAAAAACACCAGGACGCGCACCGGCTGAAGCTGGTGTGCGACGCGTGCGGCTTCGTCTCCAGGAGCAGGTCAGACTTGCTCTACAAGCGACGGTTCTGGATTCAAACGCACCAGGATGTGCACGGGCTGAAGCTGGTGTGCGACGCTTGCGGCTTCGTATCCAGGAGCAGGTGTCAAGCAAAAGTTCATCACGCGATGCATGAGGGCAAGACGTACCAGTGCCAGTACTGCGGGAAAACTATCGATAAGAAGTCGACGTACTTCTCGCACATGCGCGTGGTGCACCCCGCGCTGCTGAGCTCGTGCGACGAGTGCGGAGAGACGTTCGTCGGCGACAACGGGCTGCGCATGCACAAGCTGAGGGCGCACGCGAAATCTCCACAATTTAAGTGCACTACCTGTTCAGCCAACTTCACTAGTGTGGAGGCGCTGAACAGACACACGGACACGGCGGGCGAGCACGCAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACACGAACATGTCAGAGAGAAACATCCGAAGGAGACGCATCGGTGTGAAGAGTGCGACATGACGTTCCCCTCAACGAGTGCACTGGACGTGCACCACCGCCGCAAGCACCTCAACCAGCGTCCGCCCTTCATGGCCAAGGAGGACCTGGCCGCGTACGCCAGGACCATCGCCGCGCGCCGCCGCGCCGCCGGACCTGCGCCCGCCTCCAAGCCGTACATGTGCGAGCAGTGCGGCCAGGTGCTCAGGAACTCGACCCTGCTACGGTACCACCAGCGCTTGCACGAGGAGGGGAATCCGTACAAGTGCAGCATGTGTCCGAAGACCTTCGCAATTAAGTGTAATATGCAGACACACATGCGCACGCACACCGGGGAGCGACCGTTCCAGTGCGCGGACTGCCCGCTCGCGTTCGCCGAGAAGAGGAACCTGCTGCGGCACCACAGGACCCGGCGGCCGCGCGCCGCATCGCAGTTCGCTTCGCCGGTCACGTACATCGAGTCCGCGCCGTTAGGGAGCCGACACAAACACTATAGTTCAAAATCTGTAAGAATGAACTTTTGA
- Protein Sequence
- MDILQNETSKEEPLCCRACLSTDGRLFNIHEYKLGDAFALITGTPVGKDKFPQHVCAYCGTQLLKSASFREMCRRSQQTLTSELLKDKPDTDGIRRIKRPCKQFLELTFTEVHTIECIDGLPADNIKREPKTNDVDILKASTNSVKTADTEVKMEMEIEEDTSLFSEEVKRELDDEFEKSNVTVDSISGVKLVKLPLKRQRGMKREVKKRTDVKIRQTKSKATKRVSTGKDKRVKRKIRNAENNYIPEFDVAKFESAYGVKIMILSKEEQLADLASRKESLNYQQSRFRCQDCCKGFAAEAAYTNHMQRHNPSEGDFVCEICSVRYKRRFQVQKHQDAHRLKLVCDACGFVSRSRSDLLYKRRFWIQTHQDVHGLKLVCDACGFVSRSRCQAKVHHAMHEGKTYQCQYCGKTIDKKSTYFSHMRVVHPALLSSCDECGETFVGDNGLRMHKLRAHAKSPQFKCTTCSANFTSVEALNRHTDTAGEHADLRPCEQCGENCASEDALHEHVREKHPKETHRCEECDMTFPSTSALDVHHRRKHLNQRPPFMAKEDLAAYARTIAARRRAAGPAPASKPYMCEQCGQVLRNSTLLRYHQRLHEEGNPYKCSMCPKTFAIKCNMQTHMRTHTGERPFQCADCPLAFAEKRNLLRHHRTRRPRAASQFASPVTYIESAPLGSRHKHYSSKSVRMNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -