Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352316.1:13597719-13617670[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.2 23 7.1 5.0 1 23 458 480 458 480 0.97

2 9 2.1e-05 0.0024 19.6 3.5 1 23 526 549 526 549 0.96

3 9 0.014 1.5 10.8 0.0 2 23 555 576 555 576 0.95

4 9 3.7e-05 0.0041 18.9 2.0 1 23 582 604 582 604 0.97

5 9 0.0066 0.73 11.8 4.0 1 21 609 629 609 631 0.94

6 9 2.2e-06 0.00025 22.7 1.5 1 23 640 662 640 662 0.99

7 9 2e-06 0.00022 22.9 1.3 1 23 668 691 668 691 0.97

8 9 0.0012 0.14 14.1 0.8 1 23 697 720 697 720 0.94

9 9 0.0017 0.19 13.6 1.3 1 23 728 751 728 751 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.2	23	7.1	5.0	1	23	458	480	458	480	0.97
2	9	2.1e-05	0.0024	19.6	3.5	1	23	526	549	526	549	0.96
3	9	0.014	1.5	10.8	0.0	2	23	555	576	555	576	0.95
4	9	3.7e-05	0.0041	18.9	2.0	1	23	582	604	582	604	0.97
5	9	0.0066	0.73	11.8	4.0	1	21	609	629	609	631	0.94
6	9	2.2e-06	0.00025	22.7	1.5	1	23	640	662	640	662	0.99
7	9	2e-06	0.00022	22.9	1.3	1	23	668	691	668	691	0.97
8	9	0.0012	0.14	14.1	0.8	1	23	697	720	697	720	0.94
9	9	0.0017	0.19	13.6	1.3	1	23	728	751	728	751	0.95

Sequence Information

Coding Sequence: ATGTTACACAACAGTGGGCCTTACGGGCCCAACGATGCACCAATAAACATGGGAATGCCTGTGAATATGACCCAAATGTCAAATCCAATGAATTTAGGAAATAACTTGGGTAACTTGGCTAAAATGCCTCAAGCAGCACCTCAAACGACGGCCCCTGCATACAGTATGCCGGATTATTCATCATTCGGTCATCCACCGTTGAATATGGGGCATCCTATGAGCCCTTTTCAAAACTACAACCCCCTGAGCTTTCAAACAAGCTATACCCATCCTAATCCTAATTTGCCACATAATACGACACCTAGCAATCTGGAAAACAATATACTGCCCATGAATTTAAATATACATAGTGATCACGGGCCTAGTGTGATTAATTACCACAATTTTGAAAGTAAAAAGTACGAAGCAAACAATGTATATGACAGAGAAAGCTTCAGCCGGAAAGTACCAATAAATATTCCTCAAATTCATACTAAAGCTTTCCAAAAACATCTAGGAATGGATGCAAACTACGGTCAGTACAATTCTACACAAGAAAAGCAATTTTATAATCATGATTTAACAAAAACACCAGAACGATCTTTGATGGATAGTAGTAGAAGGAAAAGCTTAGAAAACACGGTTAAGCTTATTGAAAATATTCTTATAAATAGTACACCTAAAGATAAGATGAAAAATATGGGTACTGAGCCACTTTCAATAAGTACGAGTGTGGTACGAAACCACAAATTACAAAACTCTATAATGGACAGAAATAACGAAAACACAAATCAGAGTTTATTACACAAAGCCCTTAGCAGACCTGATCCAAACGTTACAGATTTACAAACTACAAATACTAAAGAAAAATCTGACGTACAAGACTTTAGTATGAATTTATCAAATAAAATGGATTCACCAAACAAACTCATTGATGCAACAGCAAATTCACAAGATACAGTGGAGAAAGATAATATAAAACCAAAAGAATATGACACAATTCCATCTAATTTAAGTAAAACCAATACAAAAAAGGACAAAGAAATAGCAACACAAATGCAAAGTGAAATCCATTGTCAACCGTTAAGGCGGAGTCTTATAAATAATCGGATAGTTACAAAAGAAAAACAGATAGAGTCGAATGACGAAACGGAGTCAGAAAAAGAGGAATTAATAACAGACATTAACATCAAGAAGGAGGTTATAGAAGAAGATGTAGTTAAAGTAAAGGTGGAACCACTAGATGGCAATGATAGTGGAAACTCGCCGTTCCTTAAGGACAGTAATGCTACAAACAGGGACGTATTAGAAGCTGATGCTGTTATTATTGAAGATAATAATATTGCTGAAGCTAAAGAAGCCGCAATAAGGGGTTCAAATCCAAAGACATACTTTGAATGTTCCCACTGTAATCTCCTCTTCAAACATCCGAAGCGGTTCCTGATCCATACAAAATGGCACACGTTCGGCTTGACCAATGAGAAGCGACACAGGATGGAAAAAGAGAATAAACTTAGGAAGAGTATGAAGAGAGAAGCTAGGATTATTGAAAGATTAGCCTCAAAAGAAGTAAAGGACGGTGAAGAGGGTGATACGCATCCGTGTAAGGATTGCGACAAGATCTTCTCATTAAAAAGCAGTCTCAAAAATCATCGCCAAAAGTACCACCCAACCCGCGTCCGTGAGTGCAAGATCTGCAAACAGTCCGTGGTAGGCTGGATGGCGCTCCGAGCTCACATGGCGGCGCACGCGGCCGGCACTGGCTTCGCGTGCCAGGAGTGCCCTAAGCGGTTCAAATACGCGCATTCCCTGGCCAAACATAGGGACACGCATCTGGAAAAAACCCACAGCTGCGAACAGTGCTCCAAAATGTTCGGCTCTCAAGCGTTACTCAAGATGCATATGAAGTGCCACGAGCGGACCGCCAGGGGCGCCACGTTTCGGTGTACTTACTGCGGGAAAGGATTCTTCGAGAGCTACAATTTACAGGTACACGAGCGAACTCACCGTAACGAGCGTCCTTTCACCTGTGACATTTGTAAGACCAGCTTCGGTACTAATTCTAGTCTCAAACGGCATCTCAAAGTTTCCCACAGCACCTCCAAACCCTTCGCCTGCCCAATATGCCACCGAAGCTTCGCATCGGCTACCACTCGCTCCCGCCACACAGCCCGAGTCCACGGAGACTCCTCCGCGTTTCCTCACAAGTGTACTCTGTGTCCGAGACAGTATAGCGCGAATAAGGAGCTACAGAAACATATAGGTAAAGTACATAGGGAGGAGAGAGATAGAGGCGAGTTCAACACGACTGCAATCTGGGAAAAGGAGTGGAGAGATAAGCCTCCTGAAAGCCTGGGCGTTTCTATAAACCCTACAGCGAAACCACCTGGCTTTTTACTGCCTAGAAAAGAATGGTGTCAGCTGAATAGGCTACGAACCGGCTGCGGACGCTCACGAGCCTTCCTGCACAAGTGCGGCTGGGTGGAGTCCCCAAAGTGCGAGTGCGGTGCAGCGGAGCAGGACGTCGCGCACATCGTCCGGGACTGTCCACTCCTTAAATACGACGGCGATCCAGCAGACTTGTTTACCCTCGACAACGACGTAATCCAATGGATGCAGAATTTAAACATTACACTCTAA
Protein Sequence: MLHNSGPYGPNDAPINMGMPVNMTQMSNPMNLGNNLGNLAKMPQAAPQTTAPAYSMPDYSSFGHPPLNMGHPMSPFQNYNPLSFQTSYTHPNPNLPHNTTPSNLENNILPMNLNIHSDHGPSVINYHNFESKKYEANNVYDRESFSRKVPINIPQIHTKAFQKHLGMDANYGQYNSTQEKQFYNHDLTKTPERSLMDSSRRKSLENTVKLIENILINSTPKDKMKNMGTEPLSISTSVVRNHKLQNSIMDRNNENTNQSLLHKALSRPDPNVTDLQTTNTKEKSDVQDFSMNLSNKMDSPNKLIDATANSQDTVEKDNIKPKEYDTIPSNLSKTNTKKDKEIATQMQSEIHCQPLRRSLINNRIVTKEKQIESNDETESEKEELITDINIKKEVIEEDVVKVKVEPLDGNDSGNSPFLKDSNATNRDVLEADAVIIEDNNIAEAKEAAIRGSNPKTYFECSHCNLLFKHPKRFLIHTKWHTFGLTNEKRHRMEKENKLRKSMKREARIIERLASKEVKDGEEGDTHPCKDCDKIFSLKSSLKNHRQKYHPTRVRECKICKQSVVGWMALRAHMAAHAAGTGFACQECPKRFKYAHSLAKHRDTHLEKTHSCEQCSKMFGSQALLKMHMKCHERTARGATFRCTYCGKGFFESYNLQVHERTHRNERPFTCDICKTSFGTNSSLKRHLKVSHSTSKPFACPICHRSFASATTRSRHTARVHGDSSAFPHKCTLCPRQYSANKELQKHIGKVHREERDRGEFNTTAIWEKEWRDKPPESLGVSINPTAKPPGFLLPRKEWCQLNRLRTGCGRSRAFLHKCGWVESPKCECGAAEQDVAHIVRDCPLLKYDGDPADLFTLDNDVIQWMQNLNITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -