Paur014354.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352313.1:20914167-20915807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.85 95 5.2 1.7 2 23 35 57 34 57 0.93 2 14 2.9 3.3e+02 3.5 0.6 3 23 81 101 80 101 0.93 3 14 0.18 20 7.3 1.8 2 23 127 148 126 148 0.96 4 14 0.00013 0.014 17.2 0.3 1 21 152 172 152 173 0.94 5 14 0.047 5.2 9.1 1.7 1 23 225 248 225 248 0.92 6 14 0.021 2.3 10.2 0.1 3 23 270 290 269 290 0.97 7 14 0.00027 0.03 16.2 2.1 1 23 313 335 313 335 0.97 8 14 4.2e-06 0.00046 21.9 0.5 1 23 339 361 339 361 0.98 9 14 0.0003 0.034 16.0 0.5 1 23 369 392 369 392 0.95 10 14 0.00062 0.069 15.0 0.6 2 23 399 421 398 421 0.98 11 14 0.0019 0.22 13.5 0.2 1 23 428 451 428 451 0.96 12 14 0.066 7.3 8.7 2.4 1 23 457 479 457 479 0.92 13 14 2.5e-07 2.8e-05 25.7 0.5 1 23 485 507 485 507 0.99 14 14 0.002 0.22 13.5 5.7 1 23 513 535 513 536 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAAGCAGAGCGCTGGCGCGCAAATTTAAGACACAATGTTTCTACTATTATATCCACAACCACTGCGTGTCCATTCAAATACAGAAAAGGCCAATTCCTTTGTTTCTTCTGTAAAGATGCATTTCCAGAAGCAGAGAAGCTTCGCCAACATCATAGAAATGATCATTATGATGAGACGAAATTGCCTAAGCTAAAAGCTTACGATCCAATGAAAGTGGACGTAGCAGATGCTTCATGCAAACTTTGTTTTGCTCAAATTACAGATTATAACATGTTAAAAACCCATTTGACCGAGCACGGCAAACAGCTAGCCACAACCCCATCTGCGCAGGGCGAGACTGTACTTCCCTTCAGTGTGCTCAAAAACAGTCTCATTTGCCAACTGTGCGAAAAGCCGTGCGAATCGCTAATGAGACTACTCAATCACATGCACGTACACTCTAATCGTCATGTATGTGACAAATGTGGAAGTCGATTCAGAAGCTCCGTGCAGTTGGCCAAACATATCCAAATGAACGAATGCGGTACATATAAAAAAGATTCCGTTGACGGAGATAATACCGATGAGCGATTTGACGGCGAACAGAGACGCATTAGCCTAATTAAGAATCTCTCAATTATCATAGCGATGACCACTGTCATCCCATTTCGTTTCAATAAAGGAGTTTATCTCTGCTATTACTGCAAAGACACATTCACAGAACCAACGACGCTTCGAAAACACAACCGTGATCAACATACTGAAATTAAAATAATACCTAAGTACTACGAACCCGCAAAAGTTGACTTCGTAAACGCTTTATGCAAGATTTGCTCTAAAGAAATTCCTGACAATCAAACATTGAAGGCCCATCTCGCTCAACATGGGGAAGAGTTAGACATGACGCATGGCGATTGCGTTATCCCTTACAACCTGAACAGTTCGTCTGAACATGTTTGTCAAATATGCGGAAAGAAATATGAAACATTCGTAGGTTTACATAGACATATTAACGAACATTACGATAGCTACATATGCGATCAATGTGGGAAGAAATTTATCACGTCCCGGCAAATGATCAGGCACGCCCGCATTCACGATGCGCACGAACAGGGGTTGTTCCCTTGCAAGAACTGCGACCAAACATTTACAATGCGCGCTTATTTAGCCTCACACGTTACTAAAGAAcacaaatccaaagagcgaaataaatgccctatttgcaacgagaaattcgccttttacggacaaagacttaaacatctacgtacggtccatgatcataaaaccgcagattatccttgcccttcgtgtgataaagtctttgatttgagcagcaaaagatctgaacatataagagctcaacacttgcaggtgaaaaaacacgagtgtcttatttgtggcatgaaattctttagtaaacatggtctcgacgatcattcagtgaaacatggtggcgagaagaaattccagtgtgaagtttgcaataaagcgttcgcccggttgaaaacgttacgtgagcatatgcgtattcataacaatgacaggcgcttcacgtgctccgcatgcgggcaggcctttgtgcaaaagtgtagcatgaaacatcatattaaggttcaccatccTACGCTTTTGAAAGACGAAATTGAATCGTAA
- Protein Sequence
- MSEAERWRANLRHNVSTIISTTTACPFKYRKGQFLCFFCKDAFPEAEKLRQHHRNDHYDETKLPKLKAYDPMKVDVADASCKLCFAQITDYNMLKTHLTEHGKQLATTPSAQGETVLPFSVLKNSLICQLCEKPCESLMRLLNHMHVHSNRHVCDKCGSRFRSSVQLAKHIQMNECGTYKKDSVDGDNTDERFDGEQRRISLIKNLSIIIAMTTVIPFRFNKGVYLCYYCKDTFTEPTTLRKHNRDQHTEIKIIPKYYEPAKVDFVNALCKICSKEIPDNQTLKAHLAQHGEELDMTHGDCVIPYNLNSSSEHVCQICGKKYETFVGLHRHINEHYDSYICDQCGKKFITSRQMIRHARIHDAHEQGLFPCKNCDQTFTMRAYLASHVTKEHKSKERNKCPICNEKFAFYGQRLKHLRTVHDHKTADYPCPSCDKVFDLSSKRSEHIRAQHLQVKKHECLICGMKFFSKHGLDDHSVKHGGEKKFQCEVCNKAFARLKTLREHMRIHNNDRRFTCSACGQAFVQKCSMKHHIKVHHPTLLKDEIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410603;
- 90% Identity
- -
- 80% Identity
- -