Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352289.1:70803562-70832397[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 0.18 13.7 6.3 1 23 231 253 231 253 0.99

2 11 1.5e-05 0.0016 20.2 0.7 1 23 259 281 259 281 0.99

3 11 8.4e-05 0.0094 17.8 1.6 1 23 287 310 287 310 0.96

4 11 0.038 4.2 9.4 3.3 1 21 316 336 316 338 0.95

5 11 4.3e-05 0.0047 18.7 0.8 1 23 344 366 344 366 0.99

6 11 9.6e-05 0.011 17.6 3.3 1 23 372 394 372 394 0.98

7 11 0.00081 0.09 14.7 1.1 1 23 402 425 402 425 0.98

8 11 0.018 2 10.5 5.0 2 23 432 453 431 453 0.96

9 11 0.0012 0.14 14.1 2.1 1 23 459 481 459 481 0.98

10 11 2e-06 0.00022 22.9 1.9 1 23 487 510 487 510 0.96

11 11 1.3e-05 0.0015 20.3 3.8 1 23 524 546 524 546 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	0.18	13.7	6.3	1	23	231	253	231	253	0.99
2	11	1.5e-05	0.0016	20.2	0.7	1	23	259	281	259	281	0.99
3	11	8.4e-05	0.0094	17.8	1.6	1	23	287	310	287	310	0.96
4	11	0.038	4.2	9.4	3.3	1	21	316	336	316	338	0.95
5	11	4.3e-05	0.0047	18.7	0.8	1	23	344	366	344	366	0.99
6	11	9.6e-05	0.011	17.6	3.3	1	23	372	394	372	394	0.98
7	11	0.00081	0.09	14.7	1.1	1	23	402	425	402	425	0.98
8	11	0.018	2	10.5	5.0	2	23	432	453	431	453	0.96
9	11	0.0012	0.14	14.1	2.1	1	23	459	481	459	481	0.98
10	11	2e-06	0.00022	22.9	1.9	1	23	487	510	487	510	0.96
11	11	1.3e-05	0.0015	20.3	3.8	1	23	524	546	524	546	0.95

Sequence Information

Coding Sequence: ATGACGACCTATAAGCGAGTCTCCCCCTCAACAGGCAACGCGACGACTCCGCCGCTGCGGGATGAGCAGCCCTTCTGTCCCCGCGTAACAAAACAAAACACGGTCACCCTCACTCGGGTAGCTTTGGCTTGCCTGGGCCCCTTCGCCTCTCACAAGTTTCACAGCAAGATGCCGCCGCCCGACAAGAAGTCCATCGCAGACGGGAAGCTGATCCAGTCCTATCTGAACACCTACAGTGCTGCTAGCGAATCTTCTACTAATGTCTTGGATTTGAACACTAGCGACGCAGAAGAGGTGCCCAGCAATGGGGTCACGTATTTTGTGGACGAGCAGGGCCGCTACTACTACCAGCAGGGCGAGAACCAGTCCATCATGTCGCTGCCTACCCCGGACGATAACGATGAGGGCATAGCTGAAGATGAGAATAACCTGATGGAAGAAGGCTATCAGACGGTGACCCTGGTGCCTTCGGAGACTGGCTCGGGCGAGGTCAGCTATGTGCTGGTGGTGCAAGAGGAAACCAAGCCAGTTCTCAATGTCGACATTAAAGTTGATCAGGAAGAGGACGAGAACAAGGACAACGAGGACGTGTACAACTTCGAGGAGGACGGCGCCGAGGAGCCCTCCGAGGGGGAGGAGGAGGGCGCCAAGCGCAAGAAGACGCCCAAGCGGCGCAACCAGCGCTCCAAGTTCACGTGCACCTTCTGCAACTACACCAGCCACAGGCGGTACCTCCTCCTCCGGCACATGAAGACCCACTCGGAGGACCGTCCATACAAGTGCAAGGTGTGCGAGCGGGGCTTCAAGACCATGGCGTCGCTGCAGAACCACGTGAACATGCACAACGGGGTCAAGCCCCACGTGTGCAAGTACTGCAACAGTCCCTTCACCACCTCCGGCGAGCTGGTGCGGCACGTGCGCTACCGGCACACGCACGAGAAGCCGCACAAGTGCACCGAGTGCGACTACGCGTCCGTGGAGCTCTCCAAGCTGCGCCGCCACGTGCGCTGCCACACCGGCGAGCGGCCCTACCAGTGCCCGGACTGCACGTACGCGTCGCCCGACACGTTCAAGCTGAAGAGGCATCTGCGCACTCACACCGGCGAGAAACCCTACAAGTGCGACTCGTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAGGCTCACAAACTCATACACAACGTGGCCGAGAAGCCGGTGTACAGATGCGAGCTCTGTCCGGCCAAGTGCGGGCGCAAGACGGACCTGCGCATACACATACAGAAACTGCACACTTCGGACAAACCGCTCAAGTGCAAGAGGTGCGGGAAGACGTTCCCGGACCGCTACTCCTGCAAGTTACACAACAAGACTCACGAAGGGGAGAAGTGCTTCAAGTGCGACCTGTGCCCGTACGCGTCGACCATGCTGCGCCACCTCAAGTCGCACATGCTCAAGCACACAGACGAGAAGCCGTTCGTGTGCACCGAGTGCGACCAGAGCTTCCGTCAGAAGCAGTTACTTAGGCGGCACCAGAACCTGTACCACAACCCGGACTACGTGCCCAAGCCGCCCAAGGAGAAGACGCACGCCTGCCACGAGTGCAAGCGCACATTCGCGCACAAGGGCAACCTGATCCGACACCTGGCCATCCACGACCCGGAGTCGGGGCACACGGAGCGCGCGCTCGCGCTCAAGATCGGCCGCCAGCGCAAGGTCAAaacaaatgttcgtccagctcaagttctgatgatgggatccatgaagaatcgagggaactcctcaaatcttaagggcttacacatagtgacttttgtatttttatcaacaaatcaagcattttcattcaaaagagtgacatttgatgaagtggaactgctgatgatgaacagaacggaactcttcaacgacgcatag
Protein Sequence: MTTYKRVSPSTGNATTPPLRDEQPFCPRVTKQNTVTLTRVALACLGPFASHKFHSKMPPPDKKSIADGKLIQSYLNTYSAASESSTNVLDLNTSDAEEVPSNGVTYFVDEQGRYYYQQGENQSIMSLPTPDDNDEGIAEDENNLMEEGYQTVTLVPSETGSGEVSYVLVVQEETKPVLNVDIKVDQEEDENKDNEDVYNFEEDGAEEPSEGEEEGAKRKKTPKRRNQRSKFTCTFCNYTSHRRYLLLRHMKTHSEDRPYKCKVCERGFKTMASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVAEKPVYRCELCPAKCGRKTDLRIHIQKLHTSDKPLKCKRCGKTFPDRYSCKLHNKTHEGEKCFKCDLCPYASTMLRHLKSHMLKHTDEKPFVCTECDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHACHECKRTFAHKGNLIRHLAIHDPESGHTERALALKIGRQRKVKTNVRPAQVLMMGSMKNRGNSSNLKGLHIVTFVFLSTNQAFSFKRVTFDEVELLMMNRTELFNDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654560;
90% Identity: -
80% Identity: -