Paur013115.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- ZFY
- Assembly
- GCA_947086415.1
- Location
- OX352313.1:4109401-4114058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.2 1.4e+02 4.7 1.1 2 10 114 122 113 134 0.80 2 21 0.0011 0.12 14.3 2.3 2 23 165 187 164 187 0.95 3 21 0.0021 0.23 13.4 4.2 1 23 192 215 192 215 0.96 4 21 0.56 63 5.7 2.2 3 21 220 238 219 239 0.90 5 21 0.068 7.6 8.6 0.1 1 17 250 266 250 267 0.93 6 21 4e-05 0.0045 18.8 0.2 2 21 369 388 368 389 0.94 7 21 0.0065 0.72 11.8 1.4 3 23 422 442 421 443 0.95 8 21 0.00045 0.05 15.5 0.1 3 23 450 470 448 470 0.96 9 21 1 1.1e+02 4.9 8.8 1 22 473 494 473 494 0.94 10 21 0.00028 0.031 16.1 1.4 1 23 506 529 506 529 0.95 11 21 0.00011 0.012 17.4 0.5 1 23 535 557 535 557 0.96 12 21 1.9 2.1e+02 4.1 0.6 1 23 591 614 591 614 0.90 13 21 0.00018 0.02 16.7 1.4 2 21 741 760 740 761 0.92 14 21 0.0069 0.77 11.7 0.1 1 23 794 817 794 817 0.97 15 21 3.7e-05 0.0042 18.9 0.2 2 23 822 843 821 843 0.96 16 21 0.37 41 6.3 2.2 2 21 847 866 847 867 0.92 17 21 1.1e-05 0.0012 20.6 1.0 1 23 893 916 893 916 0.95 18 21 0.0016 0.17 13.8 0.4 1 23 922 944 922 944 0.92 19 21 1.4 1.6e+02 4.5 0.1 3 23 952 972 950 972 0.97 20 21 0.18 20 7.3 1.8 1 23 978 1001 978 1001 0.94 21 21 0.0013 0.15 14.0 1.0 2 23 1008 1030 1007 1030 0.95
Sequence Information
- Coding Sequence
- ATGTCACCCCTCCTGCCGAACAGGATCTGTGGAGCCTGCGCCGACTCTGTCACCCCCACCATCAGCCTCATAGGTTACCTCAAAGACTCGCACAGAAAATGGACAGAAGCTTCAGACTTCTTAGACCCGCTGCAGCTTAAAGACAACGTCAAGACTGCCTATATAGTAGTGGATGAAAACTTAAATAATGTAACGACTTATACGGAGAATGTCAAGAGATCTAATCATCCAGAGCATGTCTTTAAGCATTTCAAGAAACGGAAGCAGCAACAAAATGCTGTTAGAAGGAGAAATGAACTGGAAAGACGGCTGAGAGACTCTGAAATCGACACTGGTCTTAAATGCCCTGAGTGCGAGAAAAGTTTTCTGTGCGTATACAAGTATAATATACATATGAGGTATTATGATAAGCGCGCGTGCGTACATTGTCGAGAATTGATTAAACTCGAAGATTTGAAGGATCATTATAAAGACCATGGTATGGAGACTATGCAATGTGATATTTGCTATGAGACTTTTAAGAAAAAGGACACGTTCCAAAAGCATAAAATTAGGTATCACAGCAAAGGACCGTATTTCTGCTACATATGCAAGCTGTCGTACCGAGATCCTCACCATTTGGCGTCTCATATGACGAGCAAGCATGAGCCTAGAATCTGTCTAGCGTGCGACAAGAAATTCTCAAACGTGTACTGTTTTAGAACGCACTCTAGAAAATGCAAGAATTCTCAAAGAAAAGGCGGCGTATTCATTTGCGATATTTGCGCAAAAGTCTACAGCTCTAAATACGCTCTTAAAGTCGTGGAAGACCCGGGACTGCCCCCAGGCCTCTGCAGAGCCTGCTCAGAGGACGCCATAGCCGCCGCGCACTTCCGACAACTATCCTGCGTGTCCAACCAGCATTGGAACCAAGCTGTGGACTCCCTTGTCCACATACACGACCCTGAAGACGATAACAGGACTTACTACGTCTTCTACAGCAATGGAGAGATGCTAATCCGAGAGGAACTAAGAAAATCCATCTCTAAAGATGAAGTGGTACAGAGGTTAAACGAAAAGCCGGTCAAGACTAAAAGATCTTACACGAAATCCGCTGGGAAATGTCAATGCCCAGACTGCGGGAAAGATTTCCCGGTAGCTTATAATCTGAATGTGCATTTGAAGAATACTATGAAACGCGCGTGTGTTATATGTGGTGCTGTTATGGAGAGGGAAAAGCTAGCTGATCATTTAGCTAAAGTCCATGAATGTCTTTACGCTGATTGTGATATCTGCTTTAAACTGTTCGAGGATGAGAATCTACTCAAACAACATTACATGACGCATCATAGTAGATTTTCGTTCGGTTGTCAGATCTGCGGAAGAGGTTACACCAATGAAAGAGCTTTGAGAGCTCATATGTACGCCCACACTCTCTTCCACTGTTTATCTTGTAACAAAAGCTTCGAAAATCGTCGTTGCTACAAGCACCATCAGAAGAAATGCAAAACGACCAAAGCTCCCGTCGCTACCAGCTTCACATGCGATTATTGTGGGCACGTTTACAACAAAAAACCTTCCTTACGCATTCATATAATACAAAAACACCTTAACGTACTTCCTTACGTCTGTGAAACATGTGGTAAAAGGACGTCTACATTAGCACATTTGCGGTCTCACGAAGCTGTACATACTACAGAGAGGAAGTTATATAAATGCGCTTGTGGTGCTGAAATGCGAACGGAGCTAGGATATCACTTACACCAAAGGATTCATACTGGGGAAAAGCCTTATGAGTGCGAGGAATGCGGAGACAGGTTTCTGTCTTCTTCAAGACGCCTGGATCATATTAAGAGGAGACATAGGAGCACTAAAGATATGCCGCACGGCTGTGACATATGTCAGGCTAGGTTTATAATAGATGAATCCCTCTGCCCCAGCGGCGTATGCGCCGCCTGCACCGCCAGCGCCATAGCGGCCCAAGAATTCCGCACCCTAGTCGCAGACTCCCTCAAAATATGGTCCTTCGCCGTCAAACAACTAGACATCATCCCCCTCAACAACACTCCCTCTGTCAAATCTATCTGCGCGTTCATCAGACCAGATAACCTAAACATACAGATCGCTAAAGATTATTCCATAAACGAGAAAACTACTCCGTTAAATAGACTGAAGACTCGGATGAATAGAAAGAAGAGCGATGAACGAAAACCGAGAGTTCACAGGTCTGGGCCGCCATGTAAATGCACAGACTGTGGGAAGGAGTTTATAAGTCCTTACTACTTAAATGTTCATTTTAAAAATAGCGGACAGAAGGATGCTTGTATAACGTGTGGAGCGATTCTTCTTAGAGGCAAAGAGATGAGAGATCATTTAGTTAAAGTACATAGGGAAACGGCGTTTGTGTGTAAAGAGTGCCCTGCGATTTTCAACAATGAAGCTGAAGCAAAGAAACACGAGAAGAAGGCGCATAAAACTGGTTTGACATGTGGAGATTGCGGACGGACGTTTGTAAGAAATGCGTCCTTTGAAAGCCACGCGCAAATGCACGCAGTACGGACTTGTAGAACCTGCGGTGTACAATTCACAAACAGAGCTTGCTATAGGGAACATAGATCTAAATGCGAGCCGGATGCGAAACCTGACAGGGATACTGTACCCAGAAACAGACGTTCGAACATACGCGACCCAGCGCAGTTCACATGCGATTATTGTAAGAAGACTTACACGTCGCGTCCACAATTGAAGAACCATATCCTTTGGATTCATATGGATGTCCGTCCACACCAGTGCCAATGGTGTGGGAAACGTTTTTACACGCCAGCGCGGTTAGCGGAGCATAGTGTAGTGCATACTAGGGAGAGGAACTTTGGCTGTGATATTTGCGGTGCTAAATTAGTTTCGAAAATGGCTGCCGTGTACCATAGACGCAGGCATACGGGTGAAAAGCCATATCGGTGTGAGGATTGTGGGGACTGCTTCATATCTGCTTCCAGGCGCTCTGAGCATGCCAAAAGGAAGCATGGAAAAGGTCCAAGACTCCAGTGCACGAGGTGTCCTTCCAGTTTTGTTAGGATTCATGAATTGAGGAGGCATATCGAGAAAGCACATAGCCATGTCATTCCTGTAGAATATGCGCTACCTAAAGCCGAAGTTACGGGGAGCTAA
- Protein Sequence
- MSPLLPNRICGACADSVTPTISLIGYLKDSHRKWTEASDFLDPLQLKDNVKTAYIVVDENLNNVTTYTENVKRSNHPEHVFKHFKKRKQQQNAVRRRNELERRLRDSEIDTGLKCPECEKSFLCVYKYNIHMRYYDKRACVHCRELIKLEDLKDHYKDHGMETMQCDICYETFKKKDTFQKHKIRYHSKGPYFCYICKLSYRDPHHLASHMTSKHEPRICLACDKKFSNVYCFRTHSRKCKNSQRKGGVFICDICAKVYSSKYALKVVEDPGLPPGLCRACSEDAIAAAHFRQLSCVSNQHWNQAVDSLVHIHDPEDDNRTYYVFYSNGEMLIREELRKSISKDEVVQRLNEKPVKTKRSYTKSAGKCQCPDCGKDFPVAYNLNVHLKNTMKRACVICGAVMEREKLADHLAKVHECLYADCDICFKLFEDENLLKQHYMTHHSRFSFGCQICGRGYTNERALRAHMYAHTLFHCLSCNKSFENRRCYKHHQKKCKTTKAPVATSFTCDYCGHVYNKKPSLRIHIIQKHLNVLPYVCETCGKRTSTLAHLRSHEAVHTTERKLYKCACGAEMRTELGYHLHQRIHTGEKPYECEECGDRFLSSSRRLDHIKRRHRSTKDMPHGCDICQARFIIDESLCPSGVCAACTASAIAAQEFRTLVADSLKIWSFAVKQLDIIPLNNTPSVKSICAFIRPDNLNIQIAKDYSINEKTTPLNRLKTRMNRKKSDERKPRVHRSGPPCKCTDCGKEFISPYYLNVHFKNSGQKDACITCGAILLRGKEMRDHLVKVHRETAFVCKECPAIFNNEAEAKKHEKKAHKTGLTCGDCGRTFVRNASFESHAQMHAVRTCRTCGVQFTNRACYREHRSKCEPDAKPDRDTVPRNRRSNIRDPAQFTCDYCKKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFGCDICGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRLQCTRCPSSFVRIHELRRHIEKAHSHVIPVEYALPKAEVTGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -