Paur029505.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pammene aurita
Gene Symbol
-
Assembly
GCA_947086415.1
Location
OX352290.1:49803702-49826726[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3.9 4.3e+02 3.1 0.2 3 17 55 69 53 70 0.87
2 10 9.5e-05 0.011 17.6 3.6 1 20 260 279 260 282 0.94
3 10 2.4e-05 0.0027 19.5 0.3 1 23 288 310 288 310 0.99
4 10 2.2e-06 0.00025 22.7 2.1 1 23 316 338 316 338 0.98
5 10 7.2e-06 0.0008 21.1 0.8 1 23 344 366 344 366 0.98
6 10 8.6e-06 0.00095 20.9 0.1 1 23 372 394 372 394 0.96
7 10 1.6e-06 0.00017 23.2 1.3 1 23 400 422 400 422 0.98
8 10 6.3e-05 0.007 18.2 2.8 1 23 428 450 428 450 0.99
9 10 0.00044 0.049 15.5 0.5 5 23 459 477 457 477 0.94
10 10 7.2e-06 0.00081 21.1 5.4 1 23 483 506 483 506 0.97

Sequence Information

Coding Sequence
ATGGACTTTACACAAATGTGTCGAATTTGCCTTGAATCTAACAAAACAATATATAATATTTACACGAGCTTTTACGCTAAAAGAAGTACCCTATACAGCGAAATGCTATCTAATTGCACTAAGCTAAAGCCTACCAAAGATGATGGTCTGCCCAGCTCAATCTGTAAAGAATGCAGCCGCCAGTTAAAACGTTCATATGCATTTAACCTGAAGTGTGATGAAAGCGACACCAAGCTGAGAAACTACTTGGAAAATGAAAATACTGATATTAAAGATGGTGAAACAAGTAGATTAAAAGTGGATGAAACTTTAGAACTTAAAACTGAGGCGGATGATGTAAAAAGTGAAGACAATGTGGATGTTAAAGATGAAGTGGAGGTGGTTTGTAATGTTATAAATGAAATTTTTGAGAATCAACAAAATGACATCAAGGATGATATTAAACTTGAGCTTAAATCTGAGGCTGATGATGTGAAAAGTGAAGACGATATGGATCTCAAAGATGAAGTGGAGGCAGTATGCGATGTTGTTAATGAAATTTTTGAAAATACAGAAAATTACATAAAGGAAGGTATTAAACTTGAAGTGAATTGTAATGATTATGAAAACGGCCATGACAGTGGATGGGATGCTGATGATGATAACATGTTACTAGGAGATATACAGCTGAAGAAAAAACGTAAAGATTTCAACGTACAAGAAGAACAACCTAAAAAGAAAAGAGGGCGCAAAAAAAAGGTGGATGTAGAGTCCCATCTGCCAGAAAGCAAGTTGCCGCACCAGTGTGACATCTGTGGCAAGTTCCTGAGCACCAAGAGTAACCTGAAGGCGCACAAGATCTGCCACACGGAGCTGCGGCCCTACAAGTGCCCAGAGTGTCCTGCCACATTCAGAGGTTACAGCGCCCTGTTTCAGCACAAGAAAGTGCACACACGCGAAACCCCGTACCACTGCGAATACTGCCCTAAACAGTTCAGTCGACGCACGGGGCTCGTCAACCACATAAGAATGCACACAGGCGAGAAATTGTACAGCTGCGATGTCTGCTTCAAAAATTTCGTGCAGAGCGCCCAGCTCTCCATACACATGAAGAGGCACAAAGGTGACAAAACGTATTTGTGTCAGGACTGTGGAAAAGGGTTCCCCATAAAAGCGGACCTGAAGGTTCACCAAAGGATCCACAACGGGGAGAAGCCGTACTCGTGTCATCTCTGCACCAAGACGTTTGCTACCTCTGGGAATCTCTCCATACATGTCAGGATACATAATAAGGAAGTTAGGTACCGGTGTAAAGAATGCAACCGCGGATTCGTGACGTGCAGCGCGTACAACGTGCACGTGAAGCGGCACAAGGGGCAGCGCGACTACAGCTGCGAGTGCGGCAAGACCTTCTACACCTCCTCCGCCCTCAAGCAGCACAAGGTAGTGCATACCGGCGAAAAGAAGTACCAATGCAAGATATGCGACCGTAAGTTCTCTCAGACCAGCCATCTGAGCCGCCATTTCAAGCGGGACCACGCGAAACCGAACATGCCTCTGCCGTCGTCCGACCACTACAAGTTGGTTATAAGTAACGAGGACAAGCCGTTCATGTTCGACGTTCCGGCGGGGCAGGGGGTGAAGTGCGAGGGGACGTAG
Protein Sequence
MDFTQMCRICLESNKTIYNIYTSFYAKRSTLYSEMLSNCTKLKPTKDDGLPSSICKECSRQLKRSYAFNLKCDESDTKLRNYLENENTDIKDGETSRLKVDETLELKTEADDVKSEDNVDVKDEVEVVCNVINEIFENQQNDIKDDIKLELKSEADDVKSEDDMDLKDEVEAVCDVVNEIFENTENYIKEGIKLEVNCNDYENGHDSGWDADDDNMLLGDIQLKKKRKDFNVQEEQPKKKRGRKKKVDVESHLPESKLPHQCDICGKFLSTKSNLKAHKICHTELRPYKCPECPATFRGYSALFQHKKVHTRETPYHCEYCPKQFSRRTGLVNHIRMHTGEKLYSCDVCFKNFVQSAQLSIHMKRHKGDKTYLCQDCGKGFPIKADLKVHQRIHNGEKPYSCHLCTKTFATSGNLSIHVRIHNKEVRYRCKECNRGFVTCSAYNVHVKRHKGQRDYSCECGKTFYTSSALKQHKVVHTGEKKYQCKICDRKFSQTSHLSRHFKRDHAKPNMPLPSSDHYKLVISNEDKPFMFDVPAGQGVKCEGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-